RchiOBHm_Chr2g0120881

GDP-mannose transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008023
Physical Location & Seq
Forward (+)
33705588 .. 33712214
6627 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49346

Sequence Viewer

Length: 1017 bp
ATGAAGCCTTTTGAAAAGAATGAAGCTGATTTGGAAGATGGAAAGTTAGACAAAGACAGAGATAAAACACCACGAAGTAATAAGGTGGTCAAAATACAAAACCAGGCCCTGTTGTCTGGTCTCGCATATTGCATATCTTCCTGCAGCATGATACTAGTTAACAAATTTGTGCTTTCCAGCTATGATTTTAATGCTGGAATTTCTTTGATGCTGTACCAGAACCTCATCTCAGTGATTATTGTGTCTACATTGAGTTTGCTGGGAATAATATCAACGGAACCACTAACATGGAGATTGGTTAAGGTCTGGTTGCCTGTGAATGTTATATTTGTTGGGATGCTCATTACAAGCATGTTTAGCTTGAAGTACATCAATGTAGCGATGGTCACAGTCCTGAAGAATGTTACTAATGTGATCACTGCTGTTGGTGAAATGTATCTCTTTCAGAAGCACCATGACAGCAGAGTATGGACTGCTCTGTTTCTAATGATAATTTCAGCAATTTCGGGAGGGGTGACTGATTTATCTTTTCATGCCGTCGGCTATGCGTGGCAACTTACTAACTGTTTCTTAACTGCATCTTATTCTCTGACTCTGCGGAGGGTCATGGATACAGCAAAGCTTGTTACAAAATCTGGAACATTGAACGAGTTTTCTATGGTCCTGCTAAATAACTCCCTTTCTTTCCCCCTGGGGATTCTGCTTATTTTTCTTTTCAATGAGGTTGATTACCTCTTTACCACACCGCTTCTGAGATTGCCAAGCTTCTGGTTGGTAATAACACTAAGTGGATTTTTGGGTCTGGCAATCAGCTTCACTTCAATGTGGTTTCTTCATCAAACAGGTGCTACAACATACAGCCTTGTAGGGTCACTGAATAAGATCCCTCTATCCGTTGCCGGAATTGTACTTTTCAAGGTCCCAACCAGTTTAGAGAACTCTGCGAGCATATTCTTTGGTCTTTTGGCGGGAGTATTTTTCGCTAGAGCCAAAATGCGAGAGAGATCTCAATCCTGA

Protein Analysis

338

Amino Acids

37.58

Weight (kDa)

9.36

Isoelectric Point (pI)

20.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 38 - 326 4.7e-10 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 245
AciI CCGC 3 cut(s) 598, 746, 968
AclWI GGATC 1 cut(s) 877
AcsI RAATTY 2 cut(s) 164, 198
AcuI CTGAAG 1 cut(s) 416
AdeI CACNNNGTG 1 cut(s) 788
AfaI GTAC 3 cut(s) 215, 368, 909
AgsI TTSAA 6 cut(s) 14, 364, 646, 718, 822, 916
AhlI ACTAGT 1 cut(s) 154
AjnI CCWGG 2 cut(s) 102, 690
AluBI AGCT 6 cut(s) 26, 180, 360, 622, 765, 813
AluI AGCT 6 cut(s) 26, 180, 360, 622, 765, 813
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 1 cut(s) 877
AlwNI CAGNNNCTG 1 cut(s) 109
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 144
ApoI RAATTY 2 cut(s) 164, 198
AspS9I GGNCC 3 cut(s) 106, 661, 919
AsuHPI GGTGA 2 cut(s) 440, 526
AvaII GGWCC 2 cut(s) 661, 919
BbvI GCAGC 1 cut(s) 156
BccI CCATC 2 cut(s) 32, 376
BceAI ACGGC 1 cut(s) 521
BciT130I CCWGG 2 cut(s) 104, 692
BciVI GTATCC 1 cut(s) 604
BclI TGATCA 1 cut(s) 414
BcoDI GTCTC 1 cut(s) 125
BcuI ACTAGT 1 cut(s) 154
BfaI CTAG 2 cut(s) 155, 984
BfmI CTRYAG 1 cut(s) 142
BfuI GTATCC 1 cut(s) 604
BglII AGATCT 1 cut(s) 1004
BisI GCNGC 1 cut(s) 145
BlsI GCNGC 1 cut(s) 146
Bme1390I CCNGG 2 cut(s) 104, 692
Bme18I GGWCC 2 cut(s) 661, 919
BmgT120I GGNCC 3 cut(s) 106, 661, 919
BmiI GGNNCC 2 cut(s) 279, 921
BmrFI CCNGG 2 cut(s) 104, 692
BmsI GCATC 3 cut(s) 198, 327, 587
BsaBI GATNNNNATC 1 cut(s) 1009
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 690, 691
Bse1I ACTGG 1 cut(s) 927
Bse8I GATNNNNATC 1 cut(s) 1009
BseBI CCWGG 2 cut(s) 104, 692
BseDI CCNNGG 2 cut(s) 690, 691
BseGI GGATG 1 cut(s) 342
BseJI GATNNNNATC 1 cut(s) 1009
BseMII CTCAG 2 cut(s) 243, 743
BseNI ACTGG 1 cut(s) 927
BseXI GCAGC 1 cut(s) 156
BseYI CCCAGC 1 cut(s) 259
BshFI GGCC 1 cut(s) 107
BsiSI CCGG 1 cut(s) 900
BslFI GGGAC 1 cut(s) 905
BsmAI GTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 905
BsnI GGCC 1 cut(s) 107
Bso31I GGTCTC 1 cut(s) 125
Bsp143I GATC 3 cut(s) 414, 882, 1004
BspACI CCGC 3 cut(s) 598, 746, 968
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 2 cut(s) 242, 744
BspLI GGNNCC 2 cut(s) 279, 921
BspMAI CTGCAG 1 cut(s) 146
BspPI GGATC 1 cut(s) 877
BspTNI GGTCTC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 927
BssECI CCNNGG 2 cut(s) 690, 691
BssMI GATC 3 cut(s) 414, 882, 1004
Bst2UI CCWGG 2 cut(s) 104, 692
Bst4CI ACNGT 2 cut(s) 391, 566
BstC8I GCNNGC 1 cut(s) 946
BstDEI CTNAG 3 cut(s) 229, 752, 785
BstF5I GGATG 1 cut(s) 342
BstKTI GATC 3 cut(s) 417, 885, 1007
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 3 cut(s) 414, 882, 1004
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstNI CCWGG 2 cut(s) 104, 692
BstNSI RCATGY 1 cut(s) 355
BstSCI CCNGG 2 cut(s) 102, 690
BstSFI CTRYAG 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 156
BstX2I RGATCY 2 cut(s) 882, 1004
BstXI CCANNNNNNTGG 2 cut(s) 288, 768
BstYI RGATCY 2 cut(s) 882, 1004
BsuI GTATCC 1 cut(s) 604
BsuRI GGCC 1 cut(s) 107
BtgZI GCGATG 1 cut(s) 395
BtsCI GGATG 1 cut(s) 342
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 3 cut(s) 237, 417, 872
Cac8I GCNNGC 1 cut(s) 946
CaiI CAGNNNCTG 1 cut(s) 109
Cfr13I GGNCC 3 cut(s) 106, 661, 919
Csp6I GTAC 3 cut(s) 214, 367, 908
CviAII CATG 6 cut(s) 148, 288, 352, 455, 533, 607
CviQI GTAC 3 cut(s) 214, 367, 908
DdeI CTNAG 3 cut(s) 229, 752, 785
DpnI GATC 3 cut(s) 416, 884, 1006
DpnII GATC 3 cut(s) 414, 882, 1004
DraIII CACNNNGTG 1 cut(s) 788
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 2 cut(s) 661, 919
Eco57I CTGAAG 1 cut(s) 416
EcoO109I RGGNCCY 2 cut(s) 106, 919
EcoRII CCWGG 2 cut(s) 102, 690
FaeI CATG 6 cut(s) 151, 291, 355, 458, 536, 610
FaqI GGGAC 1 cut(s) 905
FatI CATG 6 cut(s) 147, 287, 351, 454, 532, 606
FauI CCCGC 1 cut(s) 961
FbaI TGATCA 1 cut(s) 414
FblI GTMKAC 1 cut(s) 245
Fnu4HI GCNGC 1 cut(s) 145
FokI GGATG 1 cut(s) 349
Fsp4HI GCNGC 1 cut(s) 145
FspBI CTAG 2 cut(s) 155, 984
GluI GCNGC 1 cut(s) 145
GsaI CCCAGC 1 cut(s) 263
HaeIII GGCC 1 cut(s) 107
HapII CCGG 1 cut(s) 900
Hin1II CATG 6 cut(s) 151, 291, 355, 458, 536, 610
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HindIII AAGCTT 2 cut(s) 620, 763
HinfI GANTC 2 cut(s) 592, 697
HpaI GTTAAC 1 cut(s) 160
HpaII CCGG 1 cut(s) 900
HphI GGTGA 2 cut(s) 440, 526
Hpy166II GTNNAC 2 cut(s) 160, 246
Hpy188I TCNGA 3 cut(s) 447, 591, 753
Hpy188III TCNNGA 4 cut(s) 394, 507, 636, 1014
Hpy8I GTNNAC 2 cut(s) 160, 246
Hpy99I CGWCG 1 cut(s) 542
HpyCH4III ACNGT 2 cut(s) 391, 566
HpyCH4V TGCA 3 cut(s) 132, 144, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
HpyF3I CTNAG 3 cut(s) 229, 752, 785
Hsp92II CATG 6 cut(s) 151, 291, 355, 458, 536, 610
Ksp22I TGATCA 1 cut(s) 414
KspAI GTTAAC 1 cut(s) 160
Kzo9I GATC 3 cut(s) 414, 882, 1004
Lsp1109I GCAGC 1 cut(s) 156
LweI GCATC 3 cut(s) 198, 327, 587
MaeI CTAG 2 cut(s) 155, 984
MaeIII GTNAC 5 cut(s) 385, 403, 514, 625, 870
MalI GATC 3 cut(s) 416, 884, 1006
MboI GATC 3 cut(s) 414, 882, 1004
MboII GAAGA 4 cut(s) 47, 129, 409, 824
MflI RGATCY 2 cut(s) 882, 1004
MluCI AATT 5 cut(s) 164, 198, 492, 501, 903
MlyI GAGTC 1 cut(s) 586
MnlI CCTC 6 cut(s) 233, 503, 594, 715, 743, 897
MseI TTAA 4 cut(s) 159, 189, 300, 572
MslI CAYNNNNRTG 3 cut(s) 230, 286, 821
MspI CCGG 1 cut(s) 900
MspR9I CCNGG 2 cut(s) 104, 692
MvaI CCWGG 2 cut(s) 104, 692
MwoI GCNNNNNNNGC 1 cut(s) 357
NdeII GATC 3 cut(s) 414, 882, 1004
NlaIII CATG 6 cut(s) 151, 291, 355, 458, 536, 610
NlaIV GGNNCC 2 cut(s) 279, 921
NmuCI GTSAC 3 cut(s) 385, 514, 870
NspI RCATGY 1 cut(s) 355
PasI CCCWGGG 1 cut(s) 691
PfeI GAWTC 1 cut(s) 697
PkrI GCNGC 1 cut(s) 146
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
PpuMI RGGWCCY 1 cut(s) 919
Psp5II RGGWCCY 1 cut(s) 919
Psp6I CCWGG 2 cut(s) 102, 690
PspFI CCCAGC 1 cut(s) 259
PspGI CCWGG 2 cut(s) 102, 690
PspN4I GGNNCC 2 cut(s) 279, 921
PspPI GGNCC 3 cut(s) 106, 661, 919
PspPPI RGGWCCY 1 cut(s) 919
PstI CTGCAG 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 109
PsuI RGATCY 2 cut(s) 882, 1004
RsaI GTAC 3 cut(s) 215, 368, 909
RsaNI GTAC 3 cut(s) 214, 367, 908
RseI CAYNNNNRTG 3 cut(s) 230, 286, 821
SaqAI TTAA 4 cut(s) 159, 189, 300, 572
SatI GCNGC 1 cut(s) 145
Sau3AI GATC 3 cut(s) 414, 882, 1004
Sau96I GGNCC 3 cut(s) 106, 661, 919
SchI GAGTC 1 cut(s) 586
ScrFI CCNGG 2 cut(s) 104, 692
SfaNI GCATC 3 cut(s) 198, 327, 587
SfcI CTRYAG 1 cut(s) 142
SinI GGWCC 2 cut(s) 661, 919
SmiMI CAYNNNNRTG 3 cut(s) 230, 286, 821
SpeI ACTAGT 1 cut(s) 154
Sse9I AATT 5 cut(s) 164, 198, 492, 501, 903
SsiI CCGC 3 cut(s) 598, 746, 968
SspMI CTAG 2 cut(s) 155, 984
StyD4I CCNGG 2 cut(s) 102, 690
TaaI ACNGT 2 cut(s) 391, 566
TasI AATT 5 cut(s) 164, 198, 492, 501, 903
TatI WGTACW 2 cut(s) 366, 907
TfiI GAWTC 1 cut(s) 697
Tru1I TTAA 4 cut(s) 159, 189, 300, 572
Tru9I TTAA 4 cut(s) 159, 189, 300, 572
TscAI CASTG 3 cut(s) 237, 424, 879
TseFI GTSAC 3 cut(s) 385, 514, 870
TseI GCWGC 1 cut(s) 144
Tsp45I GTSAC 3 cut(s) 385, 514, 870
TspDTI ATGAA 4 cut(s) 17, 36, 521, 824
TspGWI ACGGA 2 cut(s) 290, 883
TspRI CASTG 3 cut(s) 237, 424, 879
VpaK11BI GGWCC 2 cut(s) 661, 919
XapI RAATTY 2 cut(s) 164, 198
XceI RCATGY 1 cut(s) 355
XmiI GTMKAC 1 cut(s) 245
XspI CTAG 2 cut(s) 155, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.