Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005630

Physical Location & Seq

Genomic Coordinates Forward (+)

6949851 .. 6951192

Gene Structure 1342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G15970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCCTATGAAGTCGTTGAGGAATGACCATGGAACCCTTAAGGCCATGATCGGATCCGATTTCAACGAGCTCACTATCGCTGCTAAGAACCTAGCTACACACGCCTTCACACTCACTGGTTTAGGCTTTGGTACCTCTGTCCTCGAATGGGTTGCTTCAATCGCCGCCATATACTTGTTGGTGTTGGATCGAACCAATTGGAAGACGAATATGCTCACATCACTTCTCATTCCTTACATCTTCTTCAGTCTTCCTTCCTTGATCTTTGGTATTTTCAGAGGAGAAATTGGTAAATGGATTGCTTTCGTAGCTGTTGTTGTACAACTCTTCTTTCCTAAACACGCCAGAGAATACCTGGAATTACCGGTGGCTTTGGTTCTTCTCGCCGTGGTGGCACCAAATTTGATTGCTGGCACATTCAGAGACAGTTGGATTGGTTTAGCTATATGTTTAGGTATTGGATGTTACTTGCTTCAAGAACACATTAGAGCTTCAGGTGGATTCAGAAATGCATTTACTAAAGCCAATGGTATCTCCAACACCGTCGGGATCATCTGTCTCGTCGTCTTCCCCGTCTGGGCTCTTATCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016020 GO:0031668 GO:0033554 GO:0033993 GO:0042221 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071944 GO:0097305 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

197

Amino Acids

21.6

Weight (kDa)

9.12

Isoelectric Point (pI)

19.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WCOR413	PF05562	13 - 154	6.4e-62	Cold acclimation protein WCOR413

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15970 AT2G15970
fragaria_vesca	FvH4_2g07440
malus_domestica	MD00G1150100.v1.1 MD10G1085600.v1.1
prunus_persica	Prupe.8G109700_v2.0.a1 Prupe.8G109700_v2.0.a1
pyrus_communis	pycom10g06690
rosa_chinensis	RchiOBHm_Chr6g0261051 RchiOBHm_Chr6g0261111 RchiOBHm_Chr6g0261481
rosa_laevigata	RLG00000014466
rosa_multiflora	Rmu_sc0003337.1_g000030 Rmu_sc0003337.1_g000034 Rmu_sc0003487.1_g000005 Rmu_sc0005816.1_g000032
rosa_roxburghii	Rroxscaffold_7G00207630
rosa_rugosa	Rorug05G0594500 Rorug05G0594600 Rorug05G0594700 Rorug05G0594700
rosa_samantha	Rh6AG114100 Rh6BG107800 Rh6CG104900 Rh6DG095700 Rh6DG095800
rosa_wichuraiana	Rw6G009730 Rw6G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	131
AccB1I	GGYRCC	2 cut(s)	131, 394
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	4 cut(s)	48, 61, 195, 557
AcsI	RAATTY	1 cut(s)	400
AcuI	CTGAAG	2 cut(s)	229, 477
AfaI	GTAC	2 cut(s)	133, 321
AfiI	CCNNNNNNNGG	2 cut(s)	148, 577
AflII	CTTAAG	1 cut(s)	38
AgeI	ACCGGT	1 cut(s)	364
AgsI	TTSAA	3 cut(s)	64, 159, 476
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	5 cut(s)	70, 95, 311, 443, 491
AluI	AGCT	5 cut(s)	70, 95, 311, 443, 491
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	2 cut(s)	417, 563
AlwI	GGATC	4 cut(s)	48, 61, 195, 557
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	400
AsiGI	ACCGGT	1 cut(s)	364
Asp718I	GGTACC	1 cut(s)	131
BaeI	ACNNNNGTAYC	2 cut(s)	123, 156
BamHI	GGATCC	1 cut(s)	53
BanI	GGYRCC	2 cut(s)	131, 394
BanII	GRGCYC	2 cut(s)	72, 583
BbsI	GAAGAC	3 cut(s)	209, 242, 559
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	67
BceAI	ACGGC	1 cut(s)	371
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BciT130I	CCWGG	1 cut(s)	356
BcoDI	GTCTC	2 cut(s)	417, 563
BfaI	CTAG	1 cut(s)	92
BfrI	CTTAAG	1 cut(s)	38
BglI	GCCNNNNNGGC	1 cut(s)	392
BisI	GCNGC	2 cut(s)	81, 165
BlsI	GCNGC	2 cut(s)	82, 166
Bme1390I	CCNGG	1 cut(s)	356
BmiI	GGNNCC	4 cut(s)	34, 55, 133, 396
BmrFI	CCNGG	1 cut(s)	356
BpiI	GAAGAC	3 cut(s)	209, 242, 559
BsaJI	CCNNGG	2 cut(s)	28, 387
BsaWI	WCCGGW	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 577
Bse118I	RCCGGY	1 cut(s)	364
Bse1I	ACTGG	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	2 cut(s)	28, 387
BseGI	GGATG	1 cut(s)	467
BseLI	CCNNNNNNNGG	2 cut(s)	148, 577
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	67
BshFI	GGCC	1 cut(s)	44
BshNI	GGYRCC	2 cut(s)	131, 394
BshTI	ACCGGT	1 cut(s)	364
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	365
BslI	CCNNNNNNNGG	2 cut(s)	148, 577
BsmAI	GTCTC	2 cut(s)	417, 563
BsnI	GGCC	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	72, 583
Bsp1407I	TGTACA	1 cut(s)	319
Bsp143I	GATC	5 cut(s)	48, 53, 187, 261, 549
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	1 cut(s)	44
BspLI	GGNNCC	4 cut(s)	34, 55, 133, 396
BspPI	GGATC	4 cut(s)	48, 61, 195, 557
BspT107I	GGYRCC	2 cut(s)	131, 394
BspTI	CTTAAG	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	364
BsrGI	TGTACA	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	121
BssAI	RCCGGY	1 cut(s)	364
BssECI	CCNNGG	2 cut(s)	28, 387
BssMI	GATC	5 cut(s)	48, 53, 187, 261, 549
BssT1I	CCWWGG	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	2 cut(s)	428, 544
Bst6I	CTCTTC	1 cut(s)	332
BstAFI	CTTAAG	1 cut(s)	38
BstAUI	TGTACA	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	1 cut(s)	84
BstDSI	CCRYGG	2 cut(s)	28, 387
BstF5I	GGATG	1 cut(s)	467
BstKTI	GATC	5 cut(s)	51, 56, 190, 264, 552
BstMAI	GTCTC	2 cut(s)	417, 563
BstMBI	GATC	5 cut(s)	48, 53, 187, 261, 549
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 161, 308, 392
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	67
BstV2I	GAAGAC	3 cut(s)	209, 242, 559
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	44
BtgI	CCRYGG	2 cut(s)	28, 387
BtsCI	GGATG	1 cut(s)	467
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	412
Cfr10I	RCCGGY	1 cut(s)	364
Csp6I	GTAC	2 cut(s)	132, 320
CspAI	ACCGGT	1 cut(s)	364
CviAII	CATG	2 cut(s)	29, 46
CviQI	GTAC	2 cut(s)	132, 320
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	5 cut(s)	50, 55, 189, 263, 551
DpnII	GATC	5 cut(s)	48, 53, 187, 261, 549
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
Ecl136II	GAGCTC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	28
Eco24I	GRGCYC	2 cut(s)	72, 583
Eco53kI	GAGCTC	1 cut(s)	70
Eco57I	CTGAAG	2 cut(s)	229, 477
EcoICRI	GAGCTC	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	28
EcoT22I	ATGCAT	1 cut(s)	514
EcoT38I	GRGCYC	2 cut(s)	72, 583
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	2 cut(s)	32, 49
FaiI	YATR	8 cut(s)	8, 30, 47, 170, 172, 212, 446, 448
FatI	CATG	2 cut(s)	28, 45
Fnu4HI	GCNGC	2 cut(s)	81, 165
FokI	GGATG	1 cut(s)	474
FriOI	GRGCYC	2 cut(s)	72, 583
Fsp4HI	GCNGC	2 cut(s)	81, 165
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	2 cut(s)	81, 165
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	1 cut(s)	365
Hin1II	CATG	2 cut(s)	32, 49
HinfI	GANTC	1 cut(s)	501
HpaII	CCGG	1 cut(s)	365
Hpy188I	TCNGA	5 cut(s)	53, 58, 278, 422, 506
Hpy188III	TCNNGA	2 cut(s)	476, 547
Hpy99I	CGWCG	2 cut(s)	548, 566
HpyAV	CCTTC	2 cut(s)	115, 264
HpyCH4III	ACNGT	2 cut(s)	428, 544
HpyCH4V	TGCA	1 cut(s)	512
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 161, 308, 392
HpyF3I	CTNAG	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	32, 49
KpnI	GGTACC	1 cut(s)	135
Kzo9I	GATC	5 cut(s)	48, 53, 187, 261, 549
LpnPI	CCDG	8 cut(s)	102, 341, 358, 368, 378, 396, 480, 562
Lsp1109I	GCAGC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	5 cut(s)	50, 55, 189, 263, 551
MboI	GATC	5 cut(s)	48, 53, 187, 261, 549
MboII	GAAGA	7 cut(s)	214, 232, 235, 242, 319, 371, 559
MfeI	CAATTG	1 cut(s)	196
MflI	RGATCY	1 cut(s)	53
MhlI	GDGCHC	2 cut(s)	72, 583
MluCI	AATT	4 cut(s)	196, 285, 359, 400
MmeI	TCCRAC	3 cut(s)	165, 410, 561
MnlI	CCTC	4 cut(s)	12, 145, 152, 272
Mph1103I	ATGCAT	1 cut(s)	514
MseI	TTAA	2 cut(s)	39, 592
MspCI	CTTAAG	1 cut(s)	38
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	1 cut(s)	356
MunI	CAATTG	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	4 cut(s)	101, 161, 308, 392
NcoI	CCATGG	1 cut(s)	28
NdeII	GATC	5 cut(s)	48, 53, 187, 261, 549
NlaIII	CATG	2 cut(s)	32, 49
NlaIV	GGNNCC	4 cut(s)	34, 55, 133, 396
NsiI	ATGCAT	1 cut(s)	514
PcsI	WCGNNNNNNNCGW	1 cut(s)	570
PfeI	GAWTC	1 cut(s)	501
PinAI	ACCGGT	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	82, 166
Psp124BI	GAGCTC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	4 cut(s)	34, 55, 133, 396
PsuI	RGATCY	1 cut(s)	53
RsaI	GTAC	2 cut(s)	133, 321
RsaNI	GTAC	2 cut(s)	132, 320
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	39, 592
SatI	GCNGC	2 cut(s)	81, 165
Sau3AI	GATC	5 cut(s)	48, 53, 187, 261, 549
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	2 cut(s)	72, 583
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	4 cut(s)	196, 285, 359, 400
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	92
SstI	GAGCTC	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	428, 544
TaqI	TCGA	2 cut(s)	144, 190
TasI	AATT	4 cut(s)	196, 285, 359, 400
TatI	WGTACW	1 cut(s)	319
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	501
Tru1I	TTAA	2 cut(s)	39, 592
Tru9I	TTAA	2 cut(s)	39, 592
TscAI	CASTG	1 cut(s)	121
TseI	GCWGC	1 cut(s)	80
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	121
Vha464I	CTTAAG	1 cut(s)	38
XapI	RAATTY	1 cut(s)	400
XcmI	CCANNNNNNNNNTGG	2 cut(s)	175, 352
XspI	CTAG	1 cut(s)	92
Zsp2I	ATGCAT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.