Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003337.1

Orthogroup ID

OG0005630

Physical Location & Seq

Genomic Coordinates Forward (+)

123378 .. 124286

Gene Structure 909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003337.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atggggaagggctacttgagaatgaagactgactcggtttccggcgatttgatcaatgccgatttcaaagaccttgctgccgctgctaagaagcttgcaactcatgccgtccacctcggaagcttgggctttggcaccacttttcttgaatgggtcgcttcttttgctgcaatttatctgttggtcttggatcggacaaactggaaaacaaacatcctcacagggctgttaatcccatacatattctttagccttccttcactcatgtttttgcttgcatcgatgaaatgggctgaattgccggctgcgctgattcttctaatggttgtggctccgagtttaattgcaaccactgtgagggatgactggatcggcgttgtaatatgtctcgccattgcagcttacttgctgcaagaacacatccgggcatccggtggattcagaaacgctttcacacaaccccatggcgtatcaaataccgtcggcataatttgtctgttcatctaccctgtttgggcattggtccttgacatcctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016020 GO:0031668 GO:0033554 GO:0033993 GO:0042221 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071944 GO:0097305 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

179

Amino Acids

19.54

Weight (kDa)

7.81

Isoelectric Point (pI)

23.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15970 AT2G15970
fragaria_vesca	FvH4_2g07440
malus_domestica	MD00G1150100.v1.1 MD10G1085600.v1.1
prunus_persica	Prupe.8G109700_v2.0.a1 Prupe.8G109700_v2.0.a1
pyrus_communis	pycom10g06690
rosa_chinensis	RchiOBHm_Chr6g0261051 RchiOBHm_Chr6g0261111 RchiOBHm_Chr6g0261481
rosa_laevigata	RLG00000014466
rosa_multiflora	Rmu_sc0003337.1_g000030 Rmu_sc0003337.1_g000034 Rmu_sc0003487.1_g000005 Rmu_sc0005816.1_g000032
rosa_roxburghii	Rroxscaffold_7G00207630
rosa_rugosa	Rorug05G0594500 Rorug05G0594600 Rorug05G0594700 Rorug05G0594700
rosa_samantha	Rh6AG114100 Rh6BG107800 Rh6CG104900 Rh6DG095700 Rh6DG095800
rosa_wichuraiana	Rw6G009730 Rw6G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AciI	CCGC	1 cut(s)	81
AclWI	GGATC	2 cut(s)	198, 377
AfiI	CCNNNNNNNGG	2 cut(s)	357, 514
AgsI	TTSAA	2 cut(s)	67, 149
AluBI	AGCT	3 cut(s)	94, 123, 401
AluI	AGCT	3 cut(s)	94, 123, 401
Alw26I	GTCTC	1 cut(s)	392
AlwI	GGATC	2 cut(s)	198, 377
ApeKI	GCWGC	6 cut(s)	77, 83, 167, 305, 398, 409
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	523
AsuC2I	CCSGG	1 cut(s)	425
AvaII	GGWCC	1 cut(s)	523
BanI	GGYRCC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	32
BbvI	GCAGC	6 cut(s)	64, 70, 154, 292, 396, 410
BceAI	ACGGC	1 cut(s)	92
BclI	TGATCA	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	425
BcoDI	GTCTC	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	536
BisI	GCNGC	7 cut(s)	78, 81, 84, 168, 306, 399, 410
BlsI	GCNGC	7 cut(s)	79, 82, 85, 169, 307, 400, 411
Bme1390I	CCNGG	1 cut(s)	425
Bme18I	GGWCC	1 cut(s)	523
BmgT120I	GGNCC	1 cut(s)	523
BmiI	GGNNCC	2 cut(s)	136, 333
BmrFI	CCNGG	1 cut(s)	425
BmsI	GCATC	2 cut(s)	287, 437
BpiI	GAAGAC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	425
Bsa29I	ATCGAT	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	115, 463
BsaWI	WCCGGW	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	2 cut(s)	357, 514
Bse118I	RCCGGY	1 cut(s)	301
Bse1I	ACTGG	2 cut(s)	206, 371
Bse3DI	GCAATG	1 cut(s)	393
BseCI	ATCGAT	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	115, 463
BseGI	GGATG	5 cut(s)	213, 367, 420, 428, 531
BseLI	CCNNNNNNNGG	2 cut(s)	357, 514
BseMI	GCAATG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	206, 371
BseXI	GCAGC	6 cut(s)	64, 70, 154, 292, 396, 410
BshNI	GGYRCC	1 cut(s)	134
BshVI	ATCGAT	1 cut(s)	281
BsiSI	CCGG	4 cut(s)	42, 302, 424, 432
BslI	CCNNNNNNNGG	2 cut(s)	357, 514
BsmAI	GTCTC	1 cut(s)	392
Bsp143I	GATC	3 cut(s)	51, 190, 369
Bsp19I	CCATGG	1 cut(s)	463
BspACI	CCGC	1 cut(s)	81
BspDI	ATCGAT	1 cut(s)	281
BspLI	GGNNCC	2 cut(s)	136, 333
BspPI	GGATC	2 cut(s)	198, 377
BspT107I	GGYRCC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	301
BsrI	ACTGG	2 cut(s)	206, 371
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	2 cut(s)	115, 463
BssMI	GATC	3 cut(s)	51, 190, 369
BssT1I	CCWWGG	1 cut(s)	463
Bst4CI	ACNGT	2 cut(s)	355, 481
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstC8I	GCNNGC	3 cut(s)	96, 276, 303
BstDEI	CTNAG	1 cut(s)	87
BstDSI	CCRYGG	1 cut(s)	463
BstF5I	GGATG	5 cut(s)	213, 367, 420, 428, 531
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	3 cut(s)	54, 193, 372
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	3 cut(s)	51, 190, 369
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 104, 164, 307, 398
BstSCI	CCNGG	1 cut(s)	423
BstSFI	CTRYAG	1 cut(s)	536
BstV1I	GCAGC	6 cut(s)	64, 70, 154, 292, 396, 410
BstV2I	GAAGAC	1 cut(s)	32
Bsu15I	ATCGAT	1 cut(s)	281
BsuTUI	ATCGAT	1 cut(s)	281
BtgI	CCRYGG	1 cut(s)	463
BtsCI	GGATG	5 cut(s)	213, 367, 420, 428, 531
BtsIMutI	CAGTG	1 cut(s)	351
Cac8I	GCNNGC	3 cut(s)	96, 276, 303
CfoI	GCGC	1 cut(s)	310
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	523
ClaI	ATCGAT	1 cut(s)	281
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	3 cut(s)	104, 265, 464
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	3 cut(s)	53, 192, 371
DpnII	GATC	3 cut(s)	51, 190, 369
Eco130I	CCWWGG	1 cut(s)	463
Eco47I	GGWCC	1 cut(s)	523
EcoT14I	CCWWGG	1 cut(s)	463
ErhI	CCWWGG	1 cut(s)	463
FaeI	CATG	3 cut(s)	107, 268, 467
FaiI	YATR	8 cut(s)	105, 238, 242, 266, 385, 465, 488, 538
FalI	AAGNNNNNCTT	1 cut(s)	31
FatI	CATG	3 cut(s)	103, 264, 463
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	7 cut(s)	78, 81, 84, 168, 306, 399, 410
FokI	GGATG	5 cut(s)	200, 374, 407, 415, 518
Fsp4HI	GCNGC	7 cut(s)	78, 81, 84, 168, 306, 399, 410
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	7 cut(s)	78, 81, 84, 168, 306, 399, 410
HapII	CCGG	4 cut(s)	42, 302, 424, 432
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	3 cut(s)	107, 268, 467
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HindIII	AAGCTT	2 cut(s)	92, 121
HinfI	GANTC	3 cut(s)	32, 313, 438
HpaII	CCGG	4 cut(s)	42, 302, 424, 432
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	4 cut(s)	119, 195, 336, 443
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	1 cut(s)	112
Hpy99I	CGWCG	1 cut(s)	485
HpyAV	CCTTC	2 cut(s)	263, 267
HpyCH4III	ACNGT	2 cut(s)	355, 481
HpyCH4V	TGCA	6 cut(s)	98, 170, 278, 347, 398, 412
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 104, 164, 307, 398
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	3 cut(s)	107, 268, 467
HspAI	GCGC	1 cut(s)	308
KroI	GCCGGC	1 cut(s)	301
KroNI	GCCGGC	1 cut(s)	303
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	3 cut(s)	51, 190, 369
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	8 cut(s)	55, 187, 207, 315, 352, 437, 445, 522
Lsp1109I	GCAGC	6 cut(s)	64, 70, 154, 292, 396, 410
LweI	GCATC	2 cut(s)	287, 437
MalI	GATC	3 cut(s)	53, 192, 371
MboI	GATC	3 cut(s)	51, 190, 369
MboII	GAAGA	2 cut(s)	37, 308
MluCI	AATT	4 cut(s)	171, 296, 342, 489
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	3 cut(s)	125, 227, 351
MroNI	GCCGGC	1 cut(s)	301
MseI	TTAA	2 cut(s)	230, 341
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	4 cut(s)	42, 302, 424, 432
MspR9I	CCNGG	1 cut(s)	425
MwoI	GCNNNNNNNGC	5 cut(s)	83, 104, 164, 307, 398
NaeI	GCCGGC	1 cut(s)	303
NciI	CCSGG	1 cut(s)	425
NcoI	CCATGG	1 cut(s)	463
NdeII	GATC	3 cut(s)	51, 190, 369
NgoMIV	GCCGGC	1 cut(s)	301
NlaIII	CATG	3 cut(s)	107, 268, 467
NlaIV	GGNNCC	2 cut(s)	136, 333
PdiI	GCCGGC	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	313, 438
PkrI	GCNGC	7 cut(s)	79, 82, 85, 169, 307, 400, 411
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PspN4I	GGNNCC	2 cut(s)	136, 333
PspPI	GGNCC	1 cut(s)	523
SaqAI	TTAA	2 cut(s)	230, 341
SatI	GCNGC	7 cut(s)	78, 81, 84, 168, 306, 399, 410
Sau3AI	GATC	3 cut(s)	51, 190, 369
Sau96I	GGNCC	1 cut(s)	523
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	425
SetI	ASST	5 cut(s)	75, 96, 117, 125, 403
SfaNI	GCATC	2 cut(s)	287, 437
SfcI	CTRYAG	1 cut(s)	536
SinI	GGWCC	1 cut(s)	523
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	4 cut(s)	171, 296, 342, 489
SsiI	CCGC	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	423
StyI	CCWWGG	1 cut(s)	463
TaaI	ACNGT	2 cut(s)	355, 481
TaqI	TCGA	1 cut(s)	281
TasI	AATT	4 cut(s)	171, 296, 342, 489
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	2 cut(s)	313, 438
Tru1I	TTAA	2 cut(s)	230, 341
Tru9I	TTAA	2 cut(s)	230, 341
TscAI	CASTG	1 cut(s)	358
TseI	GCWGC	6 cut(s)	77, 83, 167, 305, 398, 409
TspDTI	ATGAA	3 cut(s)	38, 299, 490
TspRI	CASTG	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.