Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005630

Physical Location & Seq

Genomic Coordinates Forward (+)

16754839 .. 16756236

Gene Structure 1398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG107800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTACTCTTATGATATTTTGATTTTCACTTCTGATCTGAGAACGTGTTTAACCTGTTCATTCTTGTTTTTTTGCTGTAGTTATCTGTTGGTCTTGGATCGGACAAACTGGAAAACAAACATCCTCACAGGGCTGTTAATCCCATACATATTCTTTAGCCTTCCTTCACTCATTTTCTCTATCTTCAGGGGAGAAATTGGAAGCTGGATTGCCTTTGTTGCGGTTATCTTGCGACTCTTTTTCCCTAAACGATTCCCAGAATGGGCTGAATTGCCGGCTGCGCTGATTCTTCTAATGGTTGTGGCTCCGAGTTTAATTGCAACCACTGTGAGGGATGACTGGATCGGCGTTGCAATATGTCTCCTTATTGCAGCTTACTTGCTGCAAGAACACATCCGGGCATCCGGTGGATTCAGAAACGCTTTCACACAACCCCATGGCGTATCAAATACTGTCGGCATAATTTGTCTGTTCATCTACCCTGTTTGGGCGTTGCTCCTTGACATCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016020 GO:0031668 GO:0033554 GO:0033993 GO:0042221 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071944 GO:0097305 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

170

Amino Acids

19.27

Weight (kDa)

6.69

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WCOR413	PF05562	23 - 157	3.8e-69	Cold acclimation protein WCOR413

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15970 AT2G15970
fragaria_vesca	FvH4_2g07440
malus_domestica	MD00G1150100.v1.1 MD10G1085600.v1.1
prunus_persica	Prupe.8G109700_v2.0.a1 Prupe.8G109700_v2.0.a1
pyrus_communis	pycom10g06690
rosa_chinensis	RchiOBHm_Chr6g0261051 RchiOBHm_Chr6g0261111 RchiOBHm_Chr6g0261481
rosa_laevigata	RLG00000014466
rosa_multiflora	Rmu_sc0003337.1_g000030 Rmu_sc0003337.1_g000034 Rmu_sc0003487.1_g000005 Rmu_sc0005816.1_g000032
rosa_roxburghii	Rroxscaffold_7G00207630
rosa_rugosa	Rorug05G0594500 Rorug05G0594600 Rorug05G0594700 Rorug05G0594700
rosa_samantha	Rh6AG114100 Rh6BG107800 Rh6CG104900 Rh6DG095700 Rh6DG095800
rosa_wichuraiana	Rw6G009730 Rw6G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	221
AclWI	GGATC	2 cut(s)	105, 350
AcuI	CTGAAG	1 cut(s)	169
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	262, 330, 487
AflIII	ACRYGT	1 cut(s)	44
AluBI	AGCT	2 cut(s)	204, 374
AluI	AGCT	2 cut(s)	204, 374
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	2 cut(s)	105, 350
ApeKI	GCWGC	3 cut(s)	278, 371, 382
AspLEI	GCGC	1 cut(s)	283
AsuC2I	CCSGG	1 cut(s)	398
BbvI	GCAGC	3 cut(s)	265, 369, 383
BcnI	CCSGG	1 cut(s)	398
BcoDI	GTCTC	1 cut(s)	365
BfmI	CTRYAG	2 cut(s)	76, 509
BisI	GCNGC	3 cut(s)	279, 372, 383
BlsI	GCNGC	3 cut(s)	280, 373, 384
Bme1390I	CCNGG	1 cut(s)	398
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	398
BmsI	GCATC	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	398
BsaJI	CCNNGG	1 cut(s)	436
BsaWI	WCCGGW	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	3 cut(s)	262, 330, 487
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	2 cut(s)	113, 344
BseDI	CCNNGG	1 cut(s)	436
BseGI	GGATG	5 cut(s)	120, 340, 393, 401, 504
BseLI	CCNNNNNNNGG	3 cut(s)	262, 330, 487
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	2 cut(s)	113, 344
BseXI	GCAGC	3 cut(s)	265, 369, 383
BsiSI	CCGG	3 cut(s)	275, 397, 405
BslI	CCNNNNNNNGG	3 cut(s)	262, 330, 487
BsmAI	GTCTC	1 cut(s)	365
Bsp143I	GATC	3 cut(s)	34, 97, 342
Bsp19I	CCATGG	1 cut(s)	436
BspACI	CCGC	1 cut(s)	221
BspCNI	CTCAG	1 cut(s)	30
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	2 cut(s)	105, 350
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	2 cut(s)	113, 344
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	436
BssMI	GATC	3 cut(s)	34, 97, 342
BssT1I	CCWWGG	1 cut(s)	436
Bst4CI	ACNGT	2 cut(s)	328, 454
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	1 cut(s)	38
BstDSI	CCRYGG	1 cut(s)	436
BstF5I	GGATG	5 cut(s)	120, 340, 393, 401, 504
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	3 cut(s)	37, 100, 345
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	3 cut(s)	34, 97, 342
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 280
BstSCI	CCNGG	1 cut(s)	396
BstSFI	CTRYAG	2 cut(s)	76, 509
BstV1I	GCAGC	3 cut(s)	265, 369, 383
BtgI	CCRYGG	1 cut(s)	436
BtsCI	GGATG	5 cut(s)	120, 340, 393, 401, 504
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	1 cut(s)	276
CfoI	GCGC	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	437
CviJI	RGCY	7 cut(s)	133, 159, 204, 266, 278, 305, 374
CviKI_1	RGCY	7 cut(s)	133, 159, 204, 266, 278, 305, 374
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	3 cut(s)	36, 99, 344
DpnII	GATC	3 cut(s)	34, 97, 342
Eco130I	CCWWGG	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	436
FaeI	CATG	1 cut(s)	440
FaiI	YATR	7 cut(s)	12, 145, 149, 358, 438, 461, 511
FatI	CATG	1 cut(s)	436
Fnu4HI	GCNGC	3 cut(s)	279, 372, 383
FokI	GGATG	5 cut(s)	107, 347, 380, 388, 491
Fsp4HI	GCNGC	3 cut(s)	279, 372, 383
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	3 cut(s)	279, 372, 383
HapII	CCGG	3 cut(s)	275, 397, 405
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	1 cut(s)	440
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HinfI	GANTC	4 cut(s)	234, 252, 286, 411
HpaII	CCGG	3 cut(s)	275, 397, 405
Hpy188I	TCNGA	5 cut(s)	34, 39, 102, 309, 416
HpyAV	CCTTC	2 cut(s)	170, 174
HpyCH4III	ACNGT	2 cut(s)	328, 454
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	4 cut(s)	320, 353, 371, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 280
HpyF3I	CTNAG	1 cut(s)	38
HpySE526I	ACGT	1 cut(s)	44
Hsp92II	CATG	1 cut(s)	440
HspAI	GCGC	1 cut(s)	281
KroI	GCCGGC	1 cut(s)	274
KroNI	GCCGGC	1 cut(s)	276
Kzo9I	GATC	3 cut(s)	34, 97, 342
LmnI	GCTCC	2 cut(s)	310, 501
Lsp1109I	GCAGC	3 cut(s)	265, 369, 383
LweI	GCATC	1 cut(s)	410
MaeII	ACGT	1 cut(s)	44
MalI	GATC	3 cut(s)	36, 99, 344
MboI	GATC	3 cut(s)	34, 97, 342
MboII	GAAGA	2 cut(s)	175, 281
MluCI	AATT	4 cut(s)	195, 269, 315, 462
MlyI	GAGTC	1 cut(s)	228
MnlI	CCTC	2 cut(s)	134, 324
MroNI	GCCGGC	1 cut(s)	274
MseI	TTAA	3 cut(s)	50, 137, 314
MspI	CCGG	3 cut(s)	275, 397, 405
MspR9I	CCNGG	1 cut(s)	398
MwoI	GCNNNNNNNGC	2 cut(s)	218, 280
NaeI	GCCGGC	1 cut(s)	276
NciI	CCSGG	1 cut(s)	398
NcoI	CCATGG	1 cut(s)	436
NdeII	GATC	3 cut(s)	34, 97, 342
NgoMIV	GCCGGC	1 cut(s)	274
NlaIII	CATG	1 cut(s)	440
NlaIV	GGNNCC	1 cut(s)	306
PdiI	GCCGGC	1 cut(s)	276
PfeI	GAWTC	3 cut(s)	252, 286, 411
PkrI	GCNGC	3 cut(s)	280, 373, 384
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	306
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	3 cut(s)	50, 137, 314
SatI	GCNGC	3 cut(s)	279, 372, 383
Sau3AI	GATC	3 cut(s)	34, 97, 342
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	1 cut(s)	398
SetI	ASST	4 cut(s)	47, 56, 206, 376
SfaNI	GCATC	1 cut(s)	410
SfcI	CTRYAG	2 cut(s)	76, 509
Sse9I	AATT	4 cut(s)	195, 269, 315, 462
SsiI	CCGC	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	436
TaaI	ACNGT	2 cut(s)	328, 454
TaiI	ACGT	1 cut(s)	47
TasI	AATT	4 cut(s)	195, 269, 315, 462
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	3 cut(s)	252, 286, 411
Tru1I	TTAA	3 cut(s)	50, 137, 314
Tru9I	TTAA	3 cut(s)	50, 137, 314
TscAI	CASTG	1 cut(s)	331
TseI	GCWGC	3 cut(s)	278, 371, 382
TspDTI	ATGAA	2 cut(s)	48, 463
TspRI	CASTG	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.