Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005630

Physical Location & Seq

Genomic Coordinates Reverse (-)

13940312 .. 13941968

Gene Structure 1657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G109700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCAAAACAGAGCTACTTGAAAATGATGACTGAATCAGATGCAAATGAATTGATCCACTCAGATCTCAAAGACGTTGCCACTGCTGCTAAAAAGCTTGCCAACCATGCCATCAATCTGGGCAGCGTAGGCTTTGGCACCTCTTTCCTCAAATGGGTTGCTGCTTTTGCTGCAATCTATCTGTTGATCTTGGATCGAACAAACTGGAAATCAAACATCCTTACAGGGCTCTTAATCCCCTACATTTTCTTTACCCTTCCCTCAATATTGTTCAACATCTTCAGGGGACAGATTGGACAATGGATTGCTTTAGTTGCTGTCATCTTACGGATTTTCTTTCCTAAACATTTCCCAGAGTGGCTTGAATTGCCGGCTGCGTTGATTCTCCTTATAGTCGTTGCTCCTAGTTTAATTGCAAACACCGTGAGGGGCGACTGGATTGGCGTTGTAATATGTCTCGTCATCGCTGGTTATTTGCTGCAAGAACACATCCGGGCAGCCGGTGGGTTCAGAAATGCTTTCACAAAAGCCAATGGCGTATCAAATACCGTTGGCATAGTTATTCTGTTCGTCTACCCTGTTTGGGCATTGGTGCTTGACATCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016020 GO:0031668 GO:0033554 GO:0033993 GO:0042221 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071944 GO:0097305 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

203

Amino Acids

22.31

Weight (kDa)

9.3

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15970 AT2G15970
fragaria_vesca	FvH4_2g07440
malus_domestica	MD00G1150100.v1.1 MD10G1085600.v1.1
prunus_persica	Prupe.8G109700_v2.0.a1 Prupe.8G109700_v2.0.a1
pyrus_communis	pycom10g06690
rosa_chinensis	RchiOBHm_Chr6g0261051 RchiOBHm_Chr6g0261111 RchiOBHm_Chr6g0261481
rosa_laevigata	RLG00000014466
rosa_multiflora	Rmu_sc0003337.1_g000030 Rmu_sc0003337.1_g000034 Rmu_sc0003487.1_g000005 Rmu_sc0005816.1_g000032
rosa_roxburghii	Rroxscaffold_7G00207630
rosa_rugosa	Rorug05G0594500 Rorug05G0594600 Rorug05G0594700 Rorug05G0594700
rosa_samantha	Rh6AG114100 Rh6BG107800 Rh6CG104900 Rh6DG095700 Rh6DG095800
rosa_wichuraiana	Rw6G009730 Rw6G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	573
AclWI	GGATC	2 cut(s)	49, 201
AcuI	CTGAAG	1 cut(s)	265
AfiI	CCNNNNNNNGG	2 cut(s)	154, 583
AgsI	TTSAA	3 cut(s)	22, 274, 365
AluBI	AGCT	2 cut(s)	15, 97
AluI	AGCT	2 cut(s)	15, 97
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	2 cut(s)	49, 201
ApeKI	GCWGC	7 cut(s)	86, 123, 161, 170, 374, 478, 497
AsuC2I	CCSGG	1 cut(s)	494
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	231
BbvI	GCAGC	7 cut(s)	73, 135, 148, 157, 361, 465, 509
BccI	CCATC	1 cut(s)	119
BcnI	CCSGG	1 cut(s)	494
BcoDI	GTCTC	1 cut(s)	461
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	605
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	7 cut(s)	87, 124, 162, 171, 375, 479, 498
BlsI	GCNGC	7 cut(s)	88, 125, 163, 172, 376, 480, 499
Bme1390I	CCNGG	1 cut(s)	494
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	494
BmsI	GCATC	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	494
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 583
Bse118I	RCCGGY	2 cut(s)	370, 500
Bse1I	ACTGG	2 cut(s)	209, 440
BseGI	GGATG	3 cut(s)	216, 489, 600
BseLI	CCNNNNNNNGG	2 cut(s)	154, 583
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	2 cut(s)	209, 440
BseXI	GCAGC	7 cut(s)	73, 135, 148, 157, 361, 465, 509
BshNI	GGYRCC	1 cut(s)	137
BsiSI	CCGG	3 cut(s)	371, 493, 501
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	2 cut(s)	154, 583
BsmAI	GTCTC	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	4 cut(s)	54, 64, 186, 193
BspCNI	CTCAG	1 cut(s)	74
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	2 cut(s)	49, 201
BspT107I	GGYRCC	1 cut(s)	137
BsrFI	RCCGGY	2 cut(s)	370, 500
BsrI	ACTGG	2 cut(s)	209, 440
BssAI	RCCGGY	2 cut(s)	370, 500
BssMI	GATC	4 cut(s)	54, 64, 186, 193
Bst4CI	ACNGT	2 cut(s)	424, 550
BstC8I	GCNNGC	2 cut(s)	99, 372
BstDEI	CTNAG	1 cut(s)	61
BstF5I	GGATG	3 cut(s)	216, 489, 600
BstKTI	GATC	4 cut(s)	57, 67, 189, 196
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	4 cut(s)	54, 64, 186, 193
BstMWI	GCNNNNNNNGC	7 cut(s)	86, 107, 129, 167, 170, 314, 367
BstSCI	CCNGG	1 cut(s)	492
BstSFI	CTRYAG	1 cut(s)	605
BstV1I	GCAGC	7 cut(s)	73, 135, 148, 157, 361, 465, 509
BstX2I	RGATCY	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	64
BtgZI	GCGATG	1 cut(s)	448
BtsCI	GGATG	3 cut(s)	216, 489, 600
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	2 cut(s)	99, 372
Cfr10I	RCCGGY	2 cut(s)	370, 500
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	8 cut(s)	15, 97, 132, 229, 361, 374, 500, 530
CviKI_1	RGCY	8 cut(s)	15, 97, 132, 229, 361, 374, 500, 530
DdeI	CTNAG	1 cut(s)	61
DpnI	GATC	4 cut(s)	56, 66, 188, 195
DpnII	GATC	4 cut(s)	54, 64, 186, 193
Eco24I	GRGCYC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	265
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	1 cut(s)	110
FaiI	YATR	5 cut(s)	108, 392, 454, 557, 607
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	1 cut(s)	106
FblI	GTMKAC	1 cut(s)	573
Fnu4HI	GCNGC	7 cut(s)	87, 124, 162, 171, 375, 479, 498
FokI	GGATG	3 cut(s)	203, 476, 587
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	7 cut(s)	87, 124, 162, 171, 375, 479, 498
FspBI	CTAG	1 cut(s)	405
GluI	GCNGC	7 cut(s)	87, 124, 162, 171, 375, 479, 498
HapII	CCGG	3 cut(s)	371, 493, 501
Hin1II	CATG	1 cut(s)	110
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	2 cut(s)	35, 382
HpaII	CCGG	3 cut(s)	371, 493, 501
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	3 cut(s)	40, 64, 512
Hpy8I	GTNNAC	1 cut(s)	574
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	2 cut(s)	424, 550
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	4 cut(s)	44, 173, 416, 481
HpyF10VI	GCNNNNNNNGC	7 cut(s)	86, 107, 129, 167, 170, 314, 367
HpyF3I	CTNAG	1 cut(s)	61
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	110
KroI	GCCGGC	1 cut(s)	370
KroNI	GCCGGC	1 cut(s)	372
Kzo9I	GATC	4 cut(s)	54, 64, 186, 193
LmnI	GCTCC	1 cut(s)	406
Lsp1109I	GCAGC	7 cut(s)	73, 135, 148, 157, 361, 465, 509
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	1 cut(s)	75
MalI	GATC	4 cut(s)	56, 66, 188, 195
MboI	GATC	4 cut(s)	54, 64, 186, 193
MboII	GAAGA	1 cut(s)	271
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	3 cut(s)	50, 365, 411
MnlI	CCTC	4 cut(s)	151, 158, 271, 420
MroNI	GCCGGC	1 cut(s)	370
MseI	TTAA	2 cut(s)	233, 410
MspI	CCGG	3 cut(s)	371, 493, 501
MspR9I	CCNGG	1 cut(s)	494
MwoI	GCNNNNNNNGC	7 cut(s)	86, 107, 129, 167, 170, 314, 367
NaeI	GCCGGC	1 cut(s)	372
NciI	CCSGG	1 cut(s)	494
NdeII	GATC	4 cut(s)	54, 64, 186, 193
NgoMIV	GCCGGC	1 cut(s)	370
NlaIII	CATG	1 cut(s)	110
NlaIV	GGNNCC	1 cut(s)	139
PdiI	GCCGGC	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	35, 382
PkrI	GCNGC	7 cut(s)	88, 125, 163, 172, 376, 480, 499
PspN4I	GGNNCC	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	233, 410
SatI	GCNGC	7 cut(s)	87, 124, 162, 171, 375, 479, 498
Sau3AI	GATC	4 cut(s)	54, 64, 186, 193
ScrFI	CCNGG	1 cut(s)	494
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	4 cut(s)	17, 78, 99, 143
SfaNI	GCATC	1 cut(s)	31
SfcI	CTRYAG	1 cut(s)	605
Sse9I	AATT	3 cut(s)	50, 365, 411
SspI	AATATT	1 cut(s)	267
SspMI	CTAG	1 cut(s)	405
StyD4I	CCNGG	1 cut(s)	492
TaaI	ACNGT	2 cut(s)	424, 550
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	196
TasI	AATT	3 cut(s)	50, 365, 411
TfiI	GAWTC	2 cut(s)	35, 382
Tru1I	TTAA	2 cut(s)	233, 410
Tru9I	TTAA	2 cut(s)	233, 410
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	7 cut(s)	86, 123, 161, 170, 374, 478, 497
TspDTI	ATGAA	1 cut(s)	63
TspGWI	ACGGA	1 cut(s)	343
TspRI	CASTG	1 cut(s)	88
XmiI	GTMKAC	1 cut(s)	573
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.