Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005630

Physical Location & Seq

Genomic Coordinates Reverse (-)

79286021 .. 79290269

Gene Structure 4249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0594500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGCAAGCGGTGGCTGCCAAACTCACTCGCCCTCACTTACTCACCAGAACCTTAACCACCCTCACTCTCTCTTCTTCTTCTCCTCTCTCCAACCTGCTATCCTCCCCCGGCCGTGACGCCGCCACCGACACGTGTCTCACCCGCCGAACATCTCTCCTCTCATCTCCTCCTTGGTCCGCCACTCAACACCGCGGCGCCAGAGTCCAAGGCGCCGATGTGAGACCTGGCAATGTGATTCAAAAGAAAGATCGTATTTACCAGGTGATAAAGGTAGAGCATTCACATGAAGGAAGAGGAAAGGCCAACATTAAGCTGGAGCTTCGTGATGTCGACTCTGGGAACAAGACATCCCAAAGATTGGGGACAGAGGAGTCAGTTGATAGAGTATTTGTCATGTCAAAAAGTTACATTTACATGTGCACAGACCGGGATGGCAAAGTATTATTGATGGATCCTGATACGCTTGATCAGCTCGAAGTGAATGAAGACGTATTTGGAAAGAATGCTAAATACCTACAAGAAGAAATGAAAGTTAGAGTGGAGCTGTTTAACGGGACCCCTTTATCTGCATCAGTTCCAAAACATGTGACCTGCACTGTCAAGGAAGCACAACCTCCTATAAAGGGGATTGCAGCAACACCTAAGGATAAAATAGCTACAATCCAAAATGGCTTCACTATAAAAGTACCAGCTCATATCATAGCTGGTGAGTCTGTGGTTATTGACACCGAGGATGACTCTTATGTTAGAAGGGCCAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016020 GO:0031668 GO:0033554 GO:0033993 GO:0042221 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071944 GO:0097305 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

254

Amino Acids

27.92

Weight (kDa)

9.18

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EFP_N	PF08207	71 - 126	1.5e-12	Elongation factor P (EF-P) KOW-like domain
EFP	PF01132	146 - 188	9e-12	Elongation factor P (EF-P) OB domain
Elong-fact-P_C	PF09285	196 - 251	1.5e-15	Elongation factor P, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15970 AT2G15970
fragaria_vesca	FvH4_2g07440
malus_domestica	MD00G1150100.v1.1 MD10G1085600.v1.1
prunus_persica	Prupe.8G109700_v2.0.a1 Prupe.8G109700_v2.0.a1
pyrus_communis	pycom10g06690
rosa_chinensis	RchiOBHm_Chr6g0261051 RchiOBHm_Chr6g0261111 RchiOBHm_Chr6g0261481
rosa_laevigata	RLG00000014466
rosa_multiflora	Rmu_sc0003337.1_g000030 Rmu_sc0003337.1_g000034 Rmu_sc0003487.1_g000005 Rmu_sc0005816.1_g000032
rosa_roxburghii	Rroxscaffold_7G00207630
rosa_rugosa	Rorug05G0594500 Rorug05G0594600 Rorug05G0594700 Rorug05G0594700
rosa_samantha	Rh6AG114100 Rh6BG107800 Rh6CG104900 Rh6DG095700 Rh6DG095800
rosa_wichuraiana	Rw6G009730 Rw6G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	370
Acc36I	ACCTGC	2 cut(s)	102, 599
AccB1I	GGYRCC	2 cut(s)	194, 209
AccB7I	CCANNNNNTGG	1 cut(s)	358
AccI	GTMKAC	1 cut(s)	330
AccII	CGCG	1 cut(s)	192
AciI	CCGC	6 cut(s)	8, 120, 142, 177, 190, 192
AclWI	GGATC	2 cut(s)	446, 459
AcoI	YGGCCR	1 cut(s)	109
AcvI	CACGTG	1 cut(s)	132
AcyI	GRCGYC	3 cut(s)	117, 195, 210
AfaI	GTAC	1 cut(s)	687
AfiI	CCNNNNNNNGG	2 cut(s)	358, 623
AflIII	ACRYGT	4 cut(s)	129, 131, 414, 583
AgsI	TTSAA	1 cut(s)	239
AjnI	CCWGG	2 cut(s)	223, 258
AjuI	GAANNNNNNNTTGG	2 cut(s)	477, 509
AloI	GAACNNNNNNTCC	2 cut(s)	332, 364
AluBI	AGCT	7 cut(s)	313, 319, 472, 544, 656, 692, 704
AluI	AGCT	7 cut(s)	313, 319, 472, 544, 656, 692, 704
Alw21I	GWGCWC	1 cut(s)	422
Alw26I	GTCTC	2 cut(s)	140, 214
Alw44I	GTGCAC	1 cut(s)	418
AlwI	GGATC	2 cut(s)	446, 459
AoxI	GGCC	3 cut(s)	109, 300, 753
ApaLI	GTGCAC	1 cut(s)	418
ApeKI	GCWGC	2 cut(s)	14, 632
AspLEI	GCGC	2 cut(s)	197, 212
AspS9I	GGNCC	3 cut(s)	174, 555, 753
AsuC2I	CCSGG	2 cut(s)	108, 428
AsuHPI	GGTGA	4 cut(s)	34, 130, 274, 719
AvaII	GGWCC	2 cut(s)	174, 555
AxyI	CCTNAGG	1 cut(s)	642
BaeGI	GKGCMC	1 cut(s)	422
BamHI	GGATCC	1 cut(s)	451
BanI	GGYRCC	2 cut(s)	194, 209
BbrPI	CACGTG	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	492
Bbv12I	GWGCWC	1 cut(s)	422
BbvI	GCAGC	1 cut(s)	644
BccI	CCATC	2 cut(s)	425, 442
BceAI	ACGGC	1 cut(s)	96
BciT130I	CCWGG	2 cut(s)	225, 260
BclI	TGATCA	1 cut(s)	466
BcnI	CCSGG	2 cut(s)	108, 428
BcoDI	GTCTC	2 cut(s)	140, 214
BfoI	RGCGCY	2 cut(s)	198, 213
BfuAI	ACCTGC	2 cut(s)	102, 599
BisI	GCNGC	4 cut(s)	15, 120, 193, 633
BlsI	GCNGC	4 cut(s)	16, 121, 194, 634
Bme1390I	CCNGG	4 cut(s)	108, 225, 260, 428
Bme18I	GGWCC	2 cut(s)	174, 555
BmgT120I	GGNCC	3 cut(s)	174, 555, 753
BmiI	GGNNCC	5 cut(s)	196, 211, 453, 556, 557
BmrFI	CCNGG	4 cut(s)	108, 225, 260, 428
BmsI	GCATC	1 cut(s)	578
BoxI	GACNNNNGTC	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	492
BplI	GAGNNNNNCTC	2 cut(s)	722, 754
BpmI	CTGGAG	1 cut(s)	335
BpuMI	CCSGG	2 cut(s)	108, 428
BsaAI	YACGTR	1 cut(s)	132
BsaHI	GRCGYC	3 cut(s)	117, 195, 210
BsaI	GGTCTC	1 cut(s)	214
BsaJI	CCNNGG	6 cut(s)	106, 170, 190, 205, 729, 756
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 623
Bse21I	CCTNAGG	1 cut(s)	642
Bse3DI	GCAATG	1 cut(s)	235
BseBI	CCWGG	2 cut(s)	225, 260
BseDI	CCNNGG	6 cut(s)	106, 170, 190, 205, 729, 756
BseGI	GGATG	3 cut(s)	347, 436, 739
BseLI	CCNNNNNNNGG	2 cut(s)	358, 623
BseMI	GCAATG	1 cut(s)	235
BseRI	GAGGAG	4 cut(s)	72, 146, 156, 383
BseSI	GKGCMC	1 cut(s)	422
BseX3I	CGGCCG	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	644
BsgI	GTGCAG	1 cut(s)	577
Bsh1236I	CGCG	1 cut(s)	192
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	3 cut(s)	111, 302, 755
BshNI	GGYRCC	2 cut(s)	194, 209
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	422
BsiSI	CCGG	2 cut(s)	108, 427
BslFI	GGGAC	2 cut(s)	376, 568
BslI	CCNNNNNNNGG	2 cut(s)	358, 623
BsmAI	GTCTC	2 cut(s)	140, 214
BsmFI	GGGAC	2 cut(s)	376, 568
BsmI	GAATGC	2 cut(s)	277, 508
BsnI	GGCC	3 cut(s)	111, 302, 755
Bso31I	GGTCTC	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	422
Bsp143I	GATC	3 cut(s)	247, 451, 466
BspACI	CCGC	6 cut(s)	8, 120, 142, 177, 190, 192
BspANI	GGCC	3 cut(s)	111, 302, 755
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	5 cut(s)	196, 211, 453, 556, 557
BspMI	ACCTGC	2 cut(s)	102, 599
BspPI	GGATC	2 cut(s)	446, 459
BspT107I	GGYRCC	2 cut(s)	194, 209
BspTNI	GGTCTC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	235
BssECI	CCNNGG	6 cut(s)	106, 170, 190, 205, 729, 756
BssMI	GATC	3 cut(s)	247, 451, 466
BssNI	GRCGYC	3 cut(s)	117, 195, 210
BssT1I	CCWWGG	3 cut(s)	170, 205, 756
Bst2UI	CCWGG	2 cut(s)	225, 260
Bst4CI	ACNGT	1 cut(s)	598
Bst6I	CTCTTC	2 cut(s)	76, 286
BstACI	GRCGYC	3 cut(s)	117, 195, 210
BstBAI	YACGTR	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	642
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	3 cut(s)	347, 436, 739
BstFNI	CGCG	1 cut(s)	192
BstH2I	RGCGCY	2 cut(s)	198, 213
BstHHI	GCGC	2 cut(s)	197, 212
BstKTI	GATC	3 cut(s)	250, 454, 469
BstMAI	GTCTC	2 cut(s)	140, 214
BstMBI	GATC	3 cut(s)	247, 451, 466
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 469
BstNI	CCWGG	2 cut(s)	225, 260
BstNSI	RCATGY	2 cut(s)	418, 587
BstPAI	GACNNNNGTC	1 cut(s)	132
BstSCI	CCNGG	4 cut(s)	106, 223, 258, 426
BstSLI	GKGCMC	1 cut(s)	422
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	644
BstV2I	GAAGAC	1 cut(s)	492
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BstZI	CGGCCG	1 cut(s)	109
Bsu36I	CCTNAGG	1 cut(s)	642
BsuRI	GGCC	3 cut(s)	111, 302, 755
BtgI	CCRYGG	1 cut(s)	190
BtsCI	GGATG	3 cut(s)	347, 436, 739
BtsIMutI	CAGTG	1 cut(s)	594
BveI	ACCTGC	2 cut(s)	102, 599
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	2 cut(s)	197, 212
Cfr13I	GGNCC	3 cut(s)	174, 555, 753
Cfr42I	CCGCGG	1 cut(s)	193
CseI	GACGC	1 cut(s)	125
CsiI	ACCWGGT	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	686
CviAII	CATG	4 cut(s)	284, 394, 415, 584
CviQI	GTAC	1 cut(s)	686
DdeI	CTNAG	1 cut(s)	642
DinI	GGCGCC	2 cut(s)	196, 211
DpnI	GATC	3 cut(s)	249, 453, 468
DpnII	GATC	3 cut(s)	247, 451, 466
DrdI	GACNNNNNNGTC	1 cut(s)	370
DseDI	GACNNNNNNGTC	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	109
EagI	CGGCCG	1 cut(s)	109
Eam1104I	CTCTTC	2 cut(s)	76, 286
EarI	CTCTTC	2 cut(s)	76, 286
EciI	GGCGGA	1 cut(s)	166
EclXI	CGGCCG	1 cut(s)	109
Eco130I	CCWWGG	3 cut(s)	170, 205, 756
Eco31I	GGTCTC	1 cut(s)	214
Eco47I	GGWCC	2 cut(s)	174, 555
Eco52I	CGGCCG	1 cut(s)	109
Eco72I	CACGTG	1 cut(s)	132
Eco81I	CCTNAGG	1 cut(s)	642
EcoO109I	RGGNCCY	1 cut(s)	555
EcoRII	CCWGG	2 cut(s)	223, 258
EcoT14I	CCWWGG	3 cut(s)	170, 205, 756
EgeI	GGCGCC	2 cut(s)	196, 211
EheI	GGCGCC	2 cut(s)	196, 211
ErhI	CCWWGG	3 cut(s)	170, 205, 756
FaeI	CATG	4 cut(s)	287, 397, 418, 587
FaqI	GGGAC	2 cut(s)	376, 568
FatI	CATG	4 cut(s)	283, 393, 414, 583
FauI	CCCGC	1 cut(s)	149
FbaI	TGATCA	1 cut(s)	466
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	4 cut(s)	15, 120, 193, 633
FokI	GGATG	3 cut(s)	334, 443, 746
Fsp4HI	GCNGC	4 cut(s)	15, 120, 193, 633
GlaI	GCGC	2 cut(s)	196, 211
GluI	GCNGC	4 cut(s)	15, 120, 193, 633
GsuI	CTGGAG	1 cut(s)	335
HaeII	RGCGCY	2 cut(s)	198, 213
HaeIII	GGCC	3 cut(s)	111, 302, 755
HapII	CCGG	2 cut(s)	108, 427
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	2 cut(s)	197, 212
Hin1I	GRCGYC	3 cut(s)	117, 195, 210
Hin1II	CATG	4 cut(s)	287, 397, 418, 587
Hin6I	GCGC	2 cut(s)	195, 210
HinP1I	GCGC	2 cut(s)	195, 210
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	6 cut(s)	201, 235, 332, 371, 710, 737
HpaII	CCGG	2 cut(s)	108, 427
HphI	GGTGA	4 cut(s)	34, 130, 274, 719
Hpy166II	GTNNAC	2 cut(s)	331, 420
Hpy188III	TCNNGA	2 cut(s)	323, 455
Hpy8I	GTNNAC	2 cut(s)	331, 420
HpyAV	CCTTC	2 cut(s)	281, 744
HpyCH4III	ACNGT	1 cut(s)	598
HpyCH4IV	ACGT	2 cut(s)	131, 489
HpyCH4V	TGCA	5 cut(s)	4, 420, 569, 594, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 469
HpyF3I	CTNAG	1 cut(s)	642
HpySE526I	ACGT	2 cut(s)	131, 489
Hsp92I	GRCGYC	3 cut(s)	117, 195, 210
Hsp92II	CATG	4 cut(s)	287, 397, 418, 587
HspAI	GCGC	2 cut(s)	195, 210
KasI	GGCGCC	2 cut(s)	194, 209
KflI	GGGWCCC	1 cut(s)	555
Ksp22I	TGATCA	1 cut(s)	466
KspI	CCGCGG	1 cut(s)	193
Kzo9I	GATC	3 cut(s)	247, 451, 466
LmnI	GCTCC	2 cut(s)	316, 541
Lsp1109I	GCAGC	1 cut(s)	644
LweI	GCATC	1 cut(s)	578
MabI	ACCWGGT	1 cut(s)	258
MaeII	ACGT	2 cut(s)	131, 489
MaeIII	GTNAC	3 cut(s)	113, 404, 586
MalI	GATC	3 cut(s)	249, 453, 468
MboI	GATC	3 cut(s)	247, 451, 466
MboII	GAAGA	6 cut(s)	63, 66, 69, 303, 497, 533
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	1 cut(s)	422
Mly113I	GGCGCC	2 cut(s)	195, 210
MlyI	GAGTC	5 cut(s)	210, 326, 380, 719, 731
MmeI	TCCRAC	1 cut(s)	114
MseI	TTAA	3 cut(s)	53, 309, 549
MslI	CAYNNNNRTG	2 cut(s)	282, 413
MspA1I	CMGCKG	1 cut(s)	192
MspI	CCGG	2 cut(s)	108, 427
MspR9I	CCNGG	4 cut(s)	108, 225, 260, 428
Mva1269I	GAATGC	2 cut(s)	277, 508
MvaI	CCWGG	2 cut(s)	225, 260
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	14, 469
NarI	GGCGCC	2 cut(s)	195, 210
NciI	CCSGG	2 cut(s)	108, 428
NdeII	GATC	3 cut(s)	247, 451, 466
NlaIII	CATG	4 cut(s)	287, 397, 418, 587
NlaIV	GGNNCC	5 cut(s)	196, 211, 453, 556, 557
NmuCI	GTSAC	2 cut(s)	113, 586
NspI	RCATGY	2 cut(s)	418, 587
PciI	ACATGT	2 cut(s)	414, 583
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PctI	GAATGC	2 cut(s)	277, 508
PfeI	GAWTC	1 cut(s)	235
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	4 cut(s)	16, 121, 194, 634
PleI	GAGTC	5 cut(s)	209, 326, 379, 718, 731
PluTI	GGCGCC	2 cut(s)	198, 213
PmaCI	CACGTG	1 cut(s)	132
PmlI	CACGTG	1 cut(s)	132
PpsI	GAGTC	5 cut(s)	209, 326, 379, 718, 731
Ppu21I	YACGTR	1 cut(s)	132
PpuMI	RGGWCCY	1 cut(s)	555
PscI	ACATGT	2 cut(s)	414, 583
PshAI	GACNNNNGTC	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	555
Psp6I	CCWGG	2 cut(s)	223, 258
PspCI	CACGTG	1 cut(s)	132
PspGI	CCWGG	2 cut(s)	223, 258
PspN4I	GGNNCC	5 cut(s)	196, 211, 453, 556, 557
PspPI	GGNCC	3 cut(s)	174, 555, 753
PspPPI	RGGWCCY	1 cut(s)	555
PsuI	RGATCY	1 cut(s)	451
RsaI	GTAC	1 cut(s)	687
RsaNI	GTAC	1 cut(s)	686
RseI	CAYNNNNRTG	2 cut(s)	282, 413
SacII	CCGCGG	1 cut(s)	193
SalI	GTCGAC	1 cut(s)	329
SaqAI	TTAA	3 cut(s)	53, 309, 549
SatI	GCNGC	4 cut(s)	15, 120, 193, 633
Sau3AI	GATC	3 cut(s)	247, 451, 466
Sau96I	GGNCC	3 cut(s)	174, 555, 753
SchI	GAGTC	5 cut(s)	210, 326, 380, 719, 731
ScrFI	CCNGG	4 cut(s)	108, 225, 260, 428
SduI	GDGCHC	1 cut(s)	422
SexAI	ACCWGGT	1 cut(s)	258
SfaNI	GCATC	1 cut(s)	578
SfoI	GGCGCC	2 cut(s)	196, 211
Sfr303I	CCGCGG	1 cut(s)	193
SgrBI	CCGCGG	1 cut(s)	193
SinI	GGWCC	2 cut(s)	174, 555
SmiMI	CAYNNNNRTG	2 cut(s)	282, 413
SsiI	CCGC	6 cut(s)	8, 120, 142, 177, 190, 192
SspDI	GGCGCC	2 cut(s)	194, 209
StyD4I	CCNGG	4 cut(s)	106, 223, 258, 426
StyI	CCWWGG	3 cut(s)	170, 205, 756
TaaI	ACNGT	1 cut(s)	598
TaiI	ACGT	2 cut(s)	134, 492
TaqI	TCGA	2 cut(s)	330, 474
TauI	GCSGC	2 cut(s)	122, 195
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	3 cut(s)	53, 309, 549
Tru9I	TTAA	3 cut(s)	53, 309, 549
TscAI	CASTG	1 cut(s)	601
TseFI	GTSAC	2 cut(s)	113, 586
TseI	GCWGC	2 cut(s)	14, 632
Tsp45I	GTSAC	2 cut(s)	113, 586
TspDTI	ATGAA	3 cut(s)	300, 498, 542
TspRI	CASTG	1 cut(s)	601
Van91I	CCANNNNNTGG	1 cut(s)	358
VneI	GTGCAC	1 cut(s)	418
VpaK11BI	GGWCC	2 cut(s)	174, 555
XceI	RCATGY	2 cut(s)	418, 587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.