Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0005630

Physical Location & Seq

Genomic Coordinates Forward (+)

33168320 .. 33174373

Gene Structure 6054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1150100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCAATAAATCAGAGTTACTTGAAGATGATGACTGAATCGGACGCGGCCGATTTGATCAGCAACGATTTCAAAGTGCTCGGTGCTGCTGCTAAGAAGCTTGCCGGCCACGCCGTCCGCCTCGGCAGCTTGGGATTTGGAACTTCTTTTCTCAAATGGGTTGCTTCTTTTGCTGCAATCTATCTGTTGATCTTGGATCGAACAAACTGGAAATCGAACATTCTTACAGGGCTATTGATCCCTTACATTTTCTTCACCCTTCCTTCGATATTGTTCGACATCTTCAGGGGAGAGGTAGGAAAATGGATTGCTTTCGTTGGTGTTGTCTTACGGCTTTTCTTCCCTAAACGATTCCCAGGCGAAATATTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016020 GO:0031668 GO:0033554 GO:0033993 GO:0042221 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071944 GO:0097305 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

125

Amino Acids

13.85

Weight (kDa)

9.75

Isoelectric Point (pI)

27.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WCOR413	PF05562	10 - 122	9.8e-48	Cold acclimation protein WCOR413

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15970 AT2G15970
fragaria_vesca	FvH4_2g07440
malus_domestica	MD00G1150100.v1.1 MD10G1085600.v1.1
prunus_persica	Prupe.8G109700_v2.0.a1 Prupe.8G109700_v2.0.a1
pyrus_communis	pycom10g06690
rosa_chinensis	RchiOBHm_Chr6g0261051 RchiOBHm_Chr6g0261111 RchiOBHm_Chr6g0261481
rosa_laevigata	RLG00000014466
rosa_multiflora	Rmu_sc0003337.1_g000030 Rmu_sc0003337.1_g000034 Rmu_sc0003487.1_g000005 Rmu_sc0005816.1_g000032
rosa_roxburghii	Rroxscaffold_7G00207630
rosa_rugosa	Rorug05G0594500 Rorug05G0594600 Rorug05G0594700 Rorug05G0594700
rosa_samantha	Rh6AG114100 Rh6BG107800 Rh6CG104900 Rh6DG095700 Rh6DG095800
rosa_wichuraiana	Rw6G009730 Rw6G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	47
AciI	CCGC	2 cut(s)	47, 118
AclWI	GGATC	2 cut(s)	204, 232
AcoI	YGGCCR	2 cut(s)	48, 106
AcuI	CTGAAG	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	25, 73
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	2 cut(s)	100, 129
AluI	AGCT	2 cut(s)	100, 129
Alw21I	GWGCWC	1 cut(s)	81
AlwI	GGATC	2 cut(s)	204, 232
AoxI	GGCC	2 cut(s)	48, 106
ApeKI	GCWGC	4 cut(s)	86, 89, 126, 173
AsuHPI	GGTGA	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	4 cut(s)	73, 76, 138, 160
BceAI	ACGGC	2 cut(s)	98, 347
BciT130I	CCWGG	1 cut(s)	357
BclI	TGATCA	1 cut(s)	57
BisI	GCNGC	5 cut(s)	48, 87, 90, 127, 174
BlsI	GCNGC	5 cut(s)	49, 88, 91, 128, 175
Bme1390I	CCNGG	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	357
BsaJI	CCNNGG	2 cut(s)	121, 355
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	2 cut(s)	121, 355
BseNI	ACTGG	1 cut(s)	212
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	4 cut(s)	73, 76, 138, 160
Bsh1236I	CGCG	1 cut(s)	47
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	50, 108
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	105
BsnI	GGCC	2 cut(s)	50, 108
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	4 cut(s)	57, 189, 196, 237
BspACI	CCGC	2 cut(s)	47, 118
BspANI	GGCC	2 cut(s)	50, 108
BspFNI	CGCG	1 cut(s)	47
BspPI	GGATC	2 cut(s)	204, 232
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	2 cut(s)	121, 355
BssMI	GATC	4 cut(s)	57, 189, 196, 237
Bst2UI	CCWGG	1 cut(s)	357
BstC8I	GCNNGC	2 cut(s)	102, 106
BstDEI	CTNAG	1 cut(s)	93
BstFNI	CGCG	1 cut(s)	47
BstKTI	GATC	4 cut(s)	60, 192, 199, 240
BstMBI	GATC	4 cut(s)	57, 189, 196, 237
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 126, 170
BstNI	CCWGG	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	355
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	4 cut(s)	73, 76, 138, 160
BstZI	CGGCCG	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	50, 108
Cac8I	GCNNGC	2 cut(s)	102, 106
Cfr10I	RCCGGY	1 cut(s)	104
CseI	GACGC	1 cut(s)	53
CviJI	RGCY	6 cut(s)	50, 100, 108, 129, 232, 334
CviKI_1	RGCY	6 cut(s)	50, 100, 108, 129, 232, 334
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	4 cut(s)	59, 191, 198, 239
DpnII	GATC	4 cut(s)	57, 189, 196, 237
EaeI	YGGCCR	2 cut(s)	48, 106
EagI	CGGCCG	1 cut(s)	48
EciI	GGCGGA	1 cut(s)	107
EclXI	CGGCCG	1 cut(s)	48
Eco52I	CGGCCG	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	355
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	5 cut(s)	48, 87, 90, 127, 174
Fsp4HI	GCNGC	5 cut(s)	48, 87, 90, 127, 174
GluI	GCNGC	5 cut(s)	48, 87, 90, 127, 174
HaeIII	GGCC	2 cut(s)	50, 108
HapII	CCGG	1 cut(s)	105
HgaI	GACGC	1 cut(s)	53
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	2 cut(s)	38, 351
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	1 cut(s)	247
Hpy188I	TCNGA	2 cut(s)	15, 43
HpyAV	CCTTC	2 cut(s)	269, 273
HpyCH4V	TGCA	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 126, 170
HpyF3I	CTNAG	1 cut(s)	93
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	4 cut(s)	57, 189, 196, 237
LpnPI	CCDG	6 cut(s)	118, 193, 213, 271, 342, 369
Lsp1109I	GCAGC	4 cut(s)	73, 76, 138, 160
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	4 cut(s)	59, 191, 198, 239
MboI	GATC	4 cut(s)	57, 189, 196, 237
MboII	GAAGA	4 cut(s)	37, 244, 274, 331
MhlI	GDGCHC	1 cut(s)	81
MnlI	CCTC	2 cut(s)	131, 286
MroNI	GCCGGC	1 cut(s)	104
MseI	TTAA	1 cut(s)	373
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	357
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	3 cut(s)	110, 126, 170
NaeI	GCCGGC	1 cut(s)	106
NdeII	GATC	4 cut(s)	57, 189, 196, 237
NgoMIV	GCCGGC	1 cut(s)	104
NmeAIII	GCCGAG	1 cut(s)	102
PdiI	GCCGGC	1 cut(s)	106
PfeI	GAWTC	2 cut(s)	38, 351
PkrI	GCNGC	5 cut(s)	49, 88, 91, 128, 175
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
SaqAI	TTAA	1 cut(s)	373
SatI	GCNGC	5 cut(s)	48, 87, 90, 127, 174
Sau3AI	GATC	4 cut(s)	57, 189, 196, 237
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	3 cut(s)	102, 131, 297
SsiI	CCGC	2 cut(s)	47, 118
SspI	AATATT	1 cut(s)	366
StyD4I	CCNGG	1 cut(s)	355
TaqI	TCGA	4 cut(s)	199, 215, 266, 276
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	38, 351
Tru1I	TTAA	1 cut(s)	373
Tru9I	TTAA	1 cut(s)	373
TseI	GCWGC	4 cut(s)	86, 89, 126, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.