Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005630

Physical Location & Seq

Genomic Coordinates Reverse (-)

12525578 .. 12527284

Gene Structure 1707 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1085600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCAAAAAAACAGAGCTACTTGAAGATGATGACTGAATCTGATGCCGCCGATTTGATCAGCAGCGATTTCAAAGAGCTCGGCGCTGCTGCTAAGAAGCTCGCCGGCCACGCCGTCCGCCTCGGCAGCTTGGGATTCGGAACTGCTTTTCTCAAATGGGTTGCTTCGTTTGCTGCAATCTATCTGTTGATCTTGGATCGAACAAACTGGAAATCGAACATTCTTACAGGGCTATTGATCCCCTACATTTTCTTTACCCTTCCTTCAATATTGTTCAACATCTTCAGGGGAGAGATTGGAAAATGGATTGCTCTCGTTGGTGTTGTCTTACGGCTTTTCTTCCCTAAACGTTTCCCAGAGTGGCTGGAATTGCCCGCAGCGTTGATTCTTCTTATAGTGGTTGCTCCTAGTTTATTTGCGAACACTCTGAGAGGCGACTGGATTGGTGTTGTAATATGCCTTCTCATCGCCGGTTATTTGCTGCAAGAACACATCCGGGCAGCTGGTGGGTTCAGAGACGCTTTCACCAAAGCTGGTGGAATATCGAACACTGTTGGCATAATCATTCTGTTCGTCTACCCTGTTTGGGCCATTGTACTTTATATCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016020 GO:0031668 GO:0033554 GO:0033993 GO:0042221 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071944 GO:0097305 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

204

Amino Acids

22.41

Weight (kDa)

9.64

Isoelectric Point (pI)

36.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WCOR413	PF05562	10 - 190	3.9e-85	Cold acclimation protein WCOR413

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15970 AT2G15970
fragaria_vesca	FvH4_2g07440
malus_domestica	MD00G1150100.v1.1 MD10G1085600.v1.1
prunus_persica	Prupe.8G109700_v2.0.a1 Prupe.8G109700_v2.0.a1
pyrus_communis	pycom10g06690
rosa_chinensis	RchiOBHm_Chr6g0261051 RchiOBHm_Chr6g0261111 RchiOBHm_Chr6g0261481
rosa_laevigata	RLG00000014466
rosa_multiflora	Rmu_sc0003337.1_g000030 Rmu_sc0003337.1_g000034 Rmu_sc0003487.1_g000005 Rmu_sc0005816.1_g000032
rosa_roxburghii	Rroxscaffold_7G00207630
rosa_rugosa	Rorug05G0594500 Rorug05G0594600 Rorug05G0594700 Rorug05G0594700
rosa_samantha	Rh6AG114100 Rh6BG107800 Rh6CG104900 Rh6DG095700 Rh6DG095800
rosa_wichuraiana	Rw6G009730 Rw6G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	576
AciI	CCGC	3 cut(s)	48, 118, 375
AclI	AACGTT	1 cut(s)	349
AclWI	GGATC	2 cut(s)	204, 232
AcoI	YGGCCR	1 cut(s)	106
AcuI	CTGAAG	1 cut(s)	268
AfaI	GTAC	1 cut(s)	597
AfiI	CCNNNNNNNGG	1 cut(s)	586
AgsI	TTSAA	4 cut(s)	25, 73, 267, 277
AluBI	AGCT	6 cut(s)	18, 79, 100, 129, 503, 533
AluI	AGCT	6 cut(s)	18, 79, 100, 129, 503, 533
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	510
AlwI	GGATC	2 cut(s)	204, 232
AoxI	GGCC	2 cut(s)	106, 588
ApeKI	GCWGC	8 cut(s)	63, 86, 89, 126, 173, 377, 481, 500
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	588
AsuC2I	CCSGG	1 cut(s)	497
AsuHPI	GGTGA	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	81
BarI	GAAGNNNNNNTAC	2 cut(s)	444, 476
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	8 cut(s)	73, 75, 76, 138, 160, 389, 468, 512
BceAI	ACGGC	2 cut(s)	98, 347
BclI	TGATCA	1 cut(s)	57
BcnI	CCSGG	1 cut(s)	497
BcoDI	GTCTC	1 cut(s)	510
BfaI	CTAG	1 cut(s)	408
BfoI	RGCGCY	1 cut(s)	87
BisI	GCNGC	9 cut(s)	48, 64, 87, 90, 127, 174, 378, 482, 501
BlsI	GCNGC	9 cut(s)	49, 65, 88, 91, 128, 175, 379, 483, 502
Bme1390I	CCNGG	1 cut(s)	497
BmgT120I	GGNCC	1 cut(s)	588
BmrFI	CCNGG	1 cut(s)	497
BmsI	GCATC	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	497
BsaJI	CCNNGG	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	1 cut(s)	586
Bse118I	RCCGGY	2 cut(s)	104, 470
Bse1I	ACTGG	2 cut(s)	212, 443
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	1 cut(s)	492
BseLI	CCNNNNNNNGG	1 cut(s)	586
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	2 cut(s)	212, 443
BseXI	GCAGC	8 cut(s)	73, 75, 76, 138, 160, 389, 468, 512
BshFI	GGCC	2 cut(s)	108, 590
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	3 cut(s)	105, 471, 496
BslI	CCNNNNNNNGG	1 cut(s)	586
BsmAI	GTCTC	1 cut(s)	510
BsmBI	CGTCTC	1 cut(s)	510
BsnI	GGCC	2 cut(s)	108, 590
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	4 cut(s)	57, 189, 196, 237
BspACI	CCGC	3 cut(s)	48, 118, 375
BspANI	GGCC	2 cut(s)	108, 590
BspCNI	CTCAG	1 cut(s)	420
BspPI	GGATC	2 cut(s)	204, 232
BsrFI	RCCGGY	2 cut(s)	104, 470
BsrI	ACTGG	2 cut(s)	212, 443
BssAI	RCCGGY	2 cut(s)	104, 470
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	4 cut(s)	57, 189, 196, 237
Bst4CI	ACNGT	1 cut(s)	553
BstC8I	GCNNGC	3 cut(s)	102, 106, 375
BstDEI	CTNAG	2 cut(s)	93, 428
BstF5I	GGATG	1 cut(s)	492
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	4 cut(s)	60, 192, 199, 240
BstMAI	GTCTC	1 cut(s)	510
BstMBI	GATC	4 cut(s)	57, 189, 196, 237
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 126, 170, 370
BstSCI	CCNGG	1 cut(s)	495
BstV1I	GCAGC	8 cut(s)	73, 75, 76, 138, 160, 389, 468, 512
BsuRI	GGCC	2 cut(s)	108, 590
BtgZI	GCGATG	1 cut(s)	451
BtsCI	GGATG	1 cut(s)	492
BtsIMutI	CAGTG	1 cut(s)	549
Cac8I	GCNNGC	3 cut(s)	102, 106, 375
CfoI	GCGC	1 cut(s)	86
Cfr10I	RCCGGY	2 cut(s)	104, 470
Cfr13I	GGNCC	1 cut(s)	588
CseI	GACGC	1 cut(s)	527
Csp6I	GTAC	1 cut(s)	596
CspCI	CAANNNNNGTGG	2 cut(s)	517, 552
CviQI	GTAC	1 cut(s)	596
DdeI	CTNAG	2 cut(s)	93, 428
DpnI	GATC	4 cut(s)	59, 191, 198, 239
DpnII	GATC	4 cut(s)	57, 189, 196, 237
EaeI	YGGCCR	1 cut(s)	106
EciI	GGCGGA	1 cut(s)	107
Ecl136II	GAGCTC	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	81
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	510
FaiI	YATR	5 cut(s)	395, 457, 560, 603, 610
FauI	CCCGC	1 cut(s)	382
FbaI	TGATCA	1 cut(s)	57
FblI	GTMKAC	1 cut(s)	576
Fnu4HI	GCNGC	9 cut(s)	48, 64, 87, 90, 127, 174, 378, 482, 501
FokI	GGATG	1 cut(s)	479
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	9 cut(s)	48, 64, 87, 90, 127, 174, 378, 482, 501
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	9 cut(s)	48, 64, 87, 90, 127, 174, 378, 482, 501
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	108, 590
HapII	CCGG	3 cut(s)	105, 471, 496
HgaI	GACGC	1 cut(s)	527
HhaI	GCGC	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	3 cut(s)	38, 135, 385
HpaII	CCGG	3 cut(s)	105, 471, 496
HphI	GGTGA	1 cut(s)	517
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	4 cut(s)	43, 140, 429, 515
Hpy8I	GTNNAC	1 cut(s)	577
HpyAV	CCTTC	3 cut(s)	269, 273, 470
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	2 cut(s)	176, 484
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 126, 170, 370
HpyF3I	CTNAG	2 cut(s)	93, 428
HpySE526I	ACGT	1 cut(s)	349
HspAI	GCGC	1 cut(s)	84
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	4 cut(s)	57, 189, 196, 237
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	8 cut(s)	73, 75, 76, 138, 160, 389, 468, 512
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	1 cut(s)	349
MalI	GATC	4 cut(s)	59, 191, 198, 239
MboI	GATC	4 cut(s)	57, 189, 196, 237
MboII	GAAGA	4 cut(s)	37, 274, 331, 380
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	1 cut(s)	368
MnlI	CCTC	2 cut(s)	131, 425
MroNI	GCCGGC	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	3 cut(s)	105, 471, 496
MspR9I	CCNGG	1 cut(s)	497
MwoI	GCNNNNNNNGC	4 cut(s)	110, 126, 170, 370
NaeI	GCCGGC	1 cut(s)	106
NciI	CCSGG	1 cut(s)	497
NdeII	GATC	4 cut(s)	57, 189, 196, 237
NgoMIV	GCCGGC	1 cut(s)	104
NmeAIII	GCCGAG	2 cut(s)	60, 102
PdiI	GCCGGC	1 cut(s)	106
PfeI	GAWTC	3 cut(s)	38, 135, 385
PkrI	GCNGC	9 cut(s)	49, 65, 88, 91, 128, 175, 379, 483, 502
Psp124BI	GAGCTC	1 cut(s)	81
Psp1406I	AACGTT	1 cut(s)	349
PspPI	GGNCC	1 cut(s)	588
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	1 cut(s)	597
RsaNI	GTAC	1 cut(s)	596
SacI	GAGCTC	1 cut(s)	81
SatI	GCNGC	9 cut(s)	48, 64, 87, 90, 127, 174, 378, 482, 501
Sau3AI	GATC	4 cut(s)	57, 189, 196, 237
Sau96I	GGNCC	1 cut(s)	588
ScrFI	CCNGG	1 cut(s)	497
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	7 cut(s)	20, 81, 102, 131, 352, 505, 535
SfaNI	GCATC	1 cut(s)	34
Sse9I	AATT	1 cut(s)	368
SsiI	CCGC	3 cut(s)	48, 118, 375
SspI	AATATT	1 cut(s)	270
SspMI	CTAG	1 cut(s)	408
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	553
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	3 cut(s)	199, 215, 545
TasI	AATT	1 cut(s)	368
TatI	WGTACW	1 cut(s)	595
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	3 cut(s)	38, 135, 385
TscAI	CASTG	1 cut(s)	556
TseI	GCWGC	8 cut(s)	63, 86, 89, 126, 173, 377, 481, 500
TspRI	CASTG	1 cut(s)	556
XmiI	GTMKAC	1 cut(s)	576
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.