Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014520

Physical Location & Seq

Genomic Coordinates Reverse (-)

6982531 .. 6983777

Gene Structure 1247 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G16060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGAGAGTGAAGGAAAGATTGTGTTCACAGAAGAGCAAGAGGCTCTTGTAGTGAAGTCTTGGAGTGTCATGAAGAAAAACTCAGCTGAATTAGGTCTCAAACTCTTCATCAAGATCTTTGAGATTGCACCAACAACGAAGAAGATGTTCTCTTTCTTGAGAGACTCACCAATTCCTGCTGAGCAAAATCCAAAGCTCAAGCCTCACGCAATGTCTGTTTTTGTCATGTGTTGTGAATCAGCAGTACAACTGAGGAAAACAGGGAAAGTTACGGTGAGGGAGACTACTTTGAAGAGACTTGGAGCCAGCCATTCTAAATACGGTGTCGTTGACGAACACTTTGAGGTGGCCAAGTATGCATTGTTGGAGACGATAAAGGAGGCAGTGCCGGAGATGTGGTCACCGGAGATGAAGGTGGCTTGGGGTCAGGCTTATGATCACCTTGTTGCTGCCATTAAAGCTGAAATGAATCTTTCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0008144 GO:0008150 GO:0009506 GO:0009628 GO:0016020 GO:0019825 GO:0030054 GO:0030312 GO:0036094 GO:0036293 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055044 GO:0070482 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Globin

Protein Analysis

160

Amino Acids

18.03

Weight (kDa)

8.46

Isoelectric Point (pI)

32.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Globin	PF00042	34 - 152	1.8e-22	Globin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16060
fragaria_vesca	FvH4_2g07770
malus_domestica	MD00G1018700.v1.1 MD00G1018800.v1.1 MD10G1083900.v1.1
prunus_persica	Prupe.8G107300_v2.0.a1
pyrus_communis	pycom05g06280 pycom10g06600
rosa_chinensis	RchiOBHm_Chr6g0262171
rosa_laevigata	RLG00000014451
rosa_multiflora	Rmu_sc0002510.1_g000017
rosa_roxburghii	Rroxscaffold_7G00207870
rosa_rugosa	Rorug05G0595200
rosa_samantha	Rh6AG115200 Rh6BG109300 Rh6DG097300
rosa_wichuraiana	Rw6G010030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	348
AfaI	GTAC	1 cut(s)	246
AgsI	TTSAA	1 cut(s)	292
AluBI	AGCT	3 cut(s)	86, 196, 461
AluI	AGCT	3 cut(s)	86, 196, 461
Alw26I	GTCTC	5 cut(s)	101, 156, 275, 289, 362
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	1 cut(s)	449
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
Asp700I	GAANNNNTTC	1 cut(s)	146
AsuHPI	GGTGA	4 cut(s)	159, 286, 393, 431
BalI	TGGCCA	1 cut(s)	350
BbvI	GCAGC	1 cut(s)	436
BclI	TGATCA	1 cut(s)	436
BcoDI	GTCTC	5 cut(s)	101, 156, 275, 289, 362
BglII	AGATCT	1 cut(s)	114
BisI	GCNGC	1 cut(s)	450
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	451
BmiI	GGNNCC	1 cut(s)	304
Bpu1102I	GCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	2 cut(s)	178, 182
BsaI	GGTCTC	1 cut(s)	101
BsaWI	WCCGGW	1 cut(s)	403
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bse3DI	GCAATG	1 cut(s)	216
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	3 cut(s)	96, 171, 242
BseXI	GCAGC	1 cut(s)	436
BshFI	GGCC	1 cut(s)	350
BsiSI	CCGG	2 cut(s)	389, 404
BsmAI	GTCTC	5 cut(s)	101, 156, 275, 289, 362
BsmBI	CGTCTC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	350
Bso31I	GGTCTC	1 cut(s)	101
Bsp143I	GATC	2 cut(s)	114, 436
Bsp1720I	GCTNAGC	1 cut(s)	180
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	3 cut(s)	95, 172, 243
BspHI	TCATGA	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	304
BspQI	GCTCTTC	1 cut(s)	27
BspTNI	GGTCTC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	216
BssMI	GATC	2 cut(s)	114, 436
Bst4CI	ACNGT	2 cut(s)	274, 323
Bst6I	CTCTTC	3 cut(s)	27, 110, 287
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	3 cut(s)	82, 180, 251
BstEII	GGTNACC	1 cut(s)	399
BstKTI	GATC	2 cut(s)	117, 439
BstMAI	GTCTC	5 cut(s)	101, 156, 275, 289, 362
BstMBI	GATC	2 cut(s)	114, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	356, 458
BstPI	GGTNACC	1 cut(s)	399
BstV1I	GCAGC	1 cut(s)	436
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	350
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	1 cut(s)	307
CciI	TCATGA	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	2 cut(s)	70, 226
CviQI	GTAC	1 cut(s)	245
DdeI	CTNAG	3 cut(s)	82, 180, 251
DpnI	GATC	2 cut(s)	116, 438
DpnII	GATC	2 cut(s)	114, 436
EaeI	YGGCCR	1 cut(s)	348
Eam1104I	CTCTTC	3 cut(s)	27, 110, 287
EarI	CTCTTC	3 cut(s)	27, 110, 287
Eco31I	GGTCTC	1 cut(s)	101
Eco91I	GGTNACC	1 cut(s)	399
EcoO65I	GGTNACC	1 cut(s)	399
EcoT22I	ATGCAT	1 cut(s)	361
Esp3I	CGTCTC	1 cut(s)	362
FaeI	CATG	2 cut(s)	73, 229
FaiI	YATR	4 cut(s)	71, 227, 357, 435
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FatI	CATG	2 cut(s)	69, 225
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	1 cut(s)	450
Fsp4HI	GCNGC	1 cut(s)	450
GluI	GCNGC	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	2 cut(s)	389, 404
Hin1II	CATG	2 cut(s)	73, 229
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	3 cut(s)	164, 236, 469
HpaII	CCGG	2 cut(s)	389, 404
HphI	GGTGA	4 cut(s)	159, 286, 393, 431
Hpy166II	GTNNAC	2 cut(s)	27, 331
Hpy188III	TCNNGA	3 cut(s)	70, 112, 157
Hpy8I	GTNNAC	2 cut(s)	27, 331
HpyAV	CCTTC	2 cut(s)	5, 406
HpyCH4III	ACNGT	2 cut(s)	274, 323
HpyCH4V	TGCA	2 cut(s)	128, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	356, 458
HpyF3I	CTNAG	3 cut(s)	82, 180, 251
Hsp92II	CATG	2 cut(s)	73, 229
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	114, 436
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	1 cut(s)	302
LpnPI	CCDG	6 cut(s)	189, 246, 319, 402, 413, 417
Lsp1109I	GCAGC	1 cut(s)	436
MaeIII	GTNAC	2 cut(s)	268, 399
MalI	GATC	2 cut(s)	116, 438
MboI	GATC	2 cut(s)	114, 436
MboII	GAAGA	6 cut(s)	44, 85, 97, 151, 154, 304
MflI	RGATCY	1 cut(s)	114
MlsI	TGGCCA	1 cut(s)	350
MluCI	AATT	2 cut(s)	89, 171
MluNI	TGGCCA	1 cut(s)	350
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	6 cut(s)	34, 213, 246, 270, 337, 373
Mox20I	TGGCCA	1 cut(s)	350
Mph1103I	ATGCAT	1 cut(s)	361
MroXI	GAANNNNTTC	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	350
MseI	TTAA	1 cut(s)	456
Msp20I	TGGCCA	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	2 cut(s)	389, 404
MwoI	GCNNNNNNNGC	2 cut(s)	356, 458
NdeII	GATC	2 cut(s)	114, 436
NlaIII	CATG	2 cut(s)	73, 229
NlaIV	GGNNCC	1 cut(s)	304
NmuCI	GTSAC	1 cut(s)	399
NsiI	ATGCAT	1 cut(s)	361
PagI	TCATGA	1 cut(s)	69
PciSI	GCTCTTC	1 cut(s)	27
PdmI	GAANNNNTTC	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	236, 469
PkrI	GCNGC	1 cut(s)	451
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PspEI	GGTNACC	1 cut(s)	399
PspN4I	GGNNCC	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	114
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	1 cut(s)	450
Sau3AI	GATC	2 cut(s)	114, 436
SchI	GAGTC	1 cut(s)	158
SetI	ASST	7 cut(s)	88, 97, 198, 348, 417, 444, 463
SmlI	CTYRAG	2 cut(s)	157, 197
SmoI	CTYRAG	2 cut(s)	157, 197
Sse9I	AATT	2 cut(s)	89, 171
TaaI	ACNGT	2 cut(s)	274, 323
TasI	AATT	2 cut(s)	89, 171
TatI	WGTACW	1 cut(s)	244
TfiI	GAWTC	2 cut(s)	236, 469
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	399
TseI	GCWGC	1 cut(s)	449
Tsp45I	GTSAC	1 cut(s)	399
TspDTI	ATGAA	4 cut(s)	86, 97, 425, 482
TspRI	CASTG	1 cut(s)	390
XmnI	GAANNNNTTC	1 cut(s)	146
Zsp2I	ATGCAT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.