FvH4_2g07770

Plastid division protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0014520
Physical Location & Seq
Reverse (-)
6709655 .. 6710582
928 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07770.t1

Sequence Viewer

Length: 474 bp
ATGGAAGGCAAAGGTTTCACAGAAGAGCAGGAAGCACTGGTGGTGAAGTCATGGGCAGCAATGAAGAAGAATTCTGCAGAATTGGGTCTTCAATTCTTCTTGAAGGTCTTTGAAATTGCACCATCAGCTCAGAAGCTGTTTTCATTCTTGAAGGATTCTGATATTCCTCTGGAGAAGAACCCCAAGCTCAAGACTCATGCCATGTCTGTCTTTGTTATGACTTGTGAATCGGCGGTTCAACTCCGTAAAGCAGGCAAAGTAACAGTGAGGGACTCAACCTTGAAAAGGTTAGGCGGGGTGCATTTCAAGTCCGGAGTAGTGGATGAACACTATGAGGTGGTTAAGTTTGCATTGTTGGAAATAATAAAAGAAGCAGTACCAGAAATGTGGTCACCAGAGATGAAGAGTGCATGGGGAGAAGCTTATGATCAGTTGGTTGCTGCTATCAAATTGGAGATGAAGCCCTCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Globin

Protein Analysis

158

Amino Acids

17.55

Weight (kDa)

7.8

Isoelectric Point (pI)

29.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Globin PF00042 31 - 149 1.5e-21 Globin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014520)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16060
fragaria_vesca FvH4_2g07770
malus_domestica MD00G1018700.v1.1 MD00G1018800.v1.1 MD10G1083900.v1.1
prunus_persica Prupe.8G107300_v2.0.a1
pyrus_communis pycom05g06280 pycom10g06600
rosa_chinensis RchiOBHm_Chr6g0262171
rosa_laevigata RLG00000014451
rosa_multiflora Rmu_sc0002510.1_g000017
rosa_roxburghii Rroxscaffold_7G00207870
rosa_rugosa Rorug05G0595200
rosa_samantha Rh6AG115200 Rh6BG109300 Rh6DG097300
rosa_wichuraiana Rw6G010030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 311
AciI CCGC 2 cut(s) 233, 294
AcsI RAATTY 1 cut(s) 70
AfaI GTAC 1 cut(s) 378
AfiI CCNNNNNNNGG 1 cut(s) 285
AgsI TTSAA 7 cut(s) 92, 103, 113, 151, 239, 283, 307
AluBI AGCT 4 cut(s) 128, 136, 187, 422
AluI AGCT 4 cut(s) 128, 136, 187, 422
AlwNI CAGNNNCTG 1 cut(s) 136
Aor13HI TCCGGA 1 cut(s) 311
ApeKI GCWGC 2 cut(s) 56, 440
ApoI RAATTY 1 cut(s) 70
AsuHPI GGTGA 2 cut(s) 55, 384
BbsI GAAGAC 1 cut(s) 80
BbvI GCAGC 2 cut(s) 68, 427
BccI CCATC 1 cut(s) 130
BclI TGATCA 1 cut(s) 427
BfmI CTRYAG 1 cut(s) 75
BisI GCNGC 2 cut(s) 57, 441
BlsI GCNGC 2 cut(s) 58, 442
BpiI GAAGAC 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 173
BsaWI WCCGGW 1 cut(s) 311
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse1I ACTGG 1 cut(s) 42
Bse3DI GCAATG 1 cut(s) 66
BseAI TCCGGA 1 cut(s) 311
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 68, 427
BsiSI CCGG 1 cut(s) 312
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 285
BsmFI GGGAC 1 cut(s) 284
Bsp13I TCCGGA 1 cut(s) 311
Bsp143I GATC 1 cut(s) 427
BspACI CCGC 2 cut(s) 233, 294
BspCNI CTCAG 1 cut(s) 142
BspEI TCCGGA 1 cut(s) 311
BspMAI CTGCAG 1 cut(s) 79
BspQI GCTCTTC 1 cut(s) 18
BsrDI GCAATG 1 cut(s) 66
BsrI ACTGG 1 cut(s) 42
BssMI GATC 1 cut(s) 427
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 2 cut(s) 18, 398
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 2 cut(s) 129, 471
BstEII GGTNACC 1 cut(s) 390
BstENI CCTNNNNNAGG 1 cut(s) 283
BstF5I GGATG 1 cut(s) 328
BstKTI GATC 1 cut(s) 430
BstMBI GATC 1 cut(s) 427
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstPI GGTNACC 1 cut(s) 390
BstSFI CTRYAG 1 cut(s) 75
BstV1I GCAGC 2 cut(s) 68, 427
BstV2I GAAGAC 1 cut(s) 80
BstXI CCANNNNNNTGG 1 cut(s) 387
BtsCI GGATG 1 cut(s) 328
BtsIMutI CAGTG 2 cut(s) 35, 270
Cac8I GCNNGC 1 cut(s) 253
CaiI CAGNNNCTG 1 cut(s) 136
Csp6I GTAC 1 cut(s) 377
CviAII CATG 4 cut(s) 51, 197, 202, 411
CviJI RGCY 5 cut(s) 128, 136, 187, 422, 463
CviKI_1 RGCY 5 cut(s) 128, 136, 187, 422, 463
CviQI GTAC 1 cut(s) 377
DdeI CTNAG 2 cut(s) 129, 471
DpnI GATC 1 cut(s) 429
DpnII GATC 1 cut(s) 427
Eam1104I CTCTTC 2 cut(s) 18, 398
EarI CTCTTC 2 cut(s) 18, 398
Eco91I GGTNACC 1 cut(s) 390
EcoNI CCTNNNNNAGG 1 cut(s) 283
EcoO65I GGTNACC 1 cut(s) 390
EcoRI GAATTC 1 cut(s) 70
FaeI CATG 4 cut(s) 54, 200, 205, 414
FaiI YATR 7 cut(s) 52, 198, 203, 218, 333, 412, 426
FaqI GGGAC 1 cut(s) 284
FatI CATG 4 cut(s) 50, 196, 201, 410
FauI CCCGC 1 cut(s) 287
FbaI TGATCA 1 cut(s) 427
Fnu4HI GCNGC 2 cut(s) 57, 441
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 2 cut(s) 57, 441
GluI GCNGC 2 cut(s) 57, 441
GsuI CTGGAG 1 cut(s) 191
HapII CCGG 1 cut(s) 312
Hin1II CATG 4 cut(s) 54, 200, 205, 414
HindIII AAGCTT 1 cut(s) 420
HinfI GANTC 4 cut(s) 155, 193, 227, 272
HpaII CCGG 1 cut(s) 312
HphI GGTGA 2 cut(s) 55, 384
Hpy188I TCNGA 2 cut(s) 132, 160
Hpy188III TCNNGA 5 cut(s) 100, 148, 170, 190, 312
HpyAV CCTTC 2 cut(s) 97, 145
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 5 cut(s) 77, 119, 301, 350, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 2 cut(s) 129, 471
Hsp92II CATG 4 cut(s) 54, 200, 205, 414
Kpn2I TCCGGA 1 cut(s) 311
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 1 cut(s) 427
LguI GCTCTTC 1 cut(s) 18
LpnPI CCDG 7 cut(s) 14, 23, 155, 237, 325, 393, 408
Lsp1109I GCAGC 2 cut(s) 68, 427
MaeIII GTNAC 2 cut(s) 259, 390
MalI GATC 1 cut(s) 429
MboI GATC 1 cut(s) 427
MboII GAAGA 7 cut(s) 35, 76, 79, 80, 88, 187, 415
MluCI AATT 5 cut(s) 70, 80, 92, 114, 449
MlyI GAGTC 2 cut(s) 187, 266
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 3 cut(s) 177, 261, 328
MroI TCCGGA 1 cut(s) 311
MseI TTAA 1 cut(s) 342
MspI CCGG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 1 cut(s) 427
NlaIII CATG 4 cut(s) 54, 200, 205, 414
NmuCI GTSAC 1 cut(s) 390
PciSI GCTCTTC 1 cut(s) 18
PfeI GAWTC 2 cut(s) 155, 227
PkrI GCNGC 2 cut(s) 58, 442
PleI GAGTC 2 cut(s) 187, 266
PpsI GAGTC 2 cut(s) 187, 266
PspEI GGTNACC 1 cut(s) 390
PstI CTGCAG 1 cut(s) 79
PstNI CAGNNNCTG 1 cut(s) 136
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 2 cut(s) 57, 441
Sau3AI GATC 1 cut(s) 427
SchI GAGTC 2 cut(s) 187, 266
SetI ASST 9 cut(s) 16, 108, 130, 138, 189, 281, 290, 339, 424
SfcI CTRYAG 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 5 cut(s) 70, 80, 92, 114, 449
SsiI CCGC 2 cut(s) 233, 294
TaaI ACNGT 1 cut(s) 265
TasI AATT 5 cut(s) 70, 80, 92, 114, 449
TfiI GAWTC 2 cut(s) 155, 227
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 2 cut(s) 42, 270
TseFI GTSAC 1 cut(s) 390
TseI GCWGC 2 cut(s) 56, 440
Tsp45I GTSAC 1 cut(s) 390
TspDTI ATGAA 5 cut(s) 77, 132, 339, 416, 473
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 2 cut(s) 42, 270
XagI CCTNNNNNAGG 1 cut(s) 283
XapI RAATTY 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.