MD00G1018800.v1.1

Belongs to the globin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0014520
Physical Location & Seq
Reverse (-)
3205571 .. 3206339
769 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1018800.v1.1.491

Sequence Viewer

Length: 399 bp
ATGGGGTTGATGAAGCAGAATGCTGCTGAGTTGAGCCTTAAGTTCTTCTTGAAGATCTTTGAAATTGCACCATCAGCTCAGAAGCTGTTCTCTTTCTTGAGGGACTCTGATATTCCTCTTGAGAAGAACCCAAAGCTCAAGCCTCATGCCATGTCTGTATTTGTTATGACTTGTGAATCTGCAGTTCAACTCAGGAAAGCAGGCAAGGTTACAGTGAGAGAGTCAACCTTGAAAAGATTAGGTGGTGTCCACTTCATGTCTGGAGTGGTAGATGAACATTATGAGGTGACCAAGTTCGCATTGTTGGAAACCATAAAGGAGGCCTTACCGGAAATGTGGTCACCGGAGATGAAGAATGCATGGAGAGAAGCTTATATGATCAGTTGGTTACTGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Globin

Protein Analysis

133

Amino Acids

15.12

Weight (kDa)

9.04

Isoelectric Point (pI)

36.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Globin PF00042 14 - 125 4.4e-18 Globin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014520)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16060
fragaria_vesca FvH4_2g07770
malus_domestica MD00G1018700.v1.1 MD00G1018800.v1.1 MD10G1083900.v1.1
prunus_persica Prupe.8G107300_v2.0.a1
pyrus_communis pycom05g06280 pycom10g06600
rosa_chinensis RchiOBHm_Chr6g0262171
rosa_laevigata RLG00000014451
rosa_multiflora Rmu_sc0002510.1_g000017
rosa_roxburghii Rroxscaffold_7G00207870
rosa_rugosa Rorug05G0595200
rosa_samantha Rh6AG115200 Rh6BG109300 Rh6DG097300
rosa_wichuraiana Rw6G010030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflII CTTAAG 1 cut(s) 38
AgsI TTSAA 4 cut(s) 52, 62, 188, 232
AluBI AGCT 4 cut(s) 77, 85, 136, 371
AluI AGCT 4 cut(s) 77, 85, 136, 371
AlwNI CAGNNNCTG 1 cut(s) 85
AoxI GGCC 1 cut(s) 321
ApeKI GCWGC 1 cut(s) 23
Asp700I GAANNNNTTC 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 298, 333
BbvI GCAGC 1 cut(s) 10
BccI CCATC 1 cut(s) 79
BclI TGATCA 1 cut(s) 378
BfmI CTRYAG 1 cut(s) 180
BfrI CTTAAG 1 cut(s) 38
BglII AGATCT 1 cut(s) 54
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
BpmI CTGGAG 1 cut(s) 282
BpuEI CTTGAG 3 cut(s) 118, 122, 140
BsaWI WCCGGW 2 cut(s) 328, 343
BseMII CTCAG 3 cut(s) 18, 92, 205
BseXI GCAGC 1 cut(s) 10
BshFI GGCC 1 cut(s) 323
BsiSI CCGG 2 cut(s) 329, 344
BslFI GGGAC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 116
BsmI GAATGC 2 cut(s) 25, 361
BsnI GGCC 1 cut(s) 323
Bsp143I GATC 2 cut(s) 54, 378
BspANI GGCC 1 cut(s) 323
BspCNI CTCAG 3 cut(s) 19, 91, 204
BspMAI CTGCAG 1 cut(s) 184
BspTI CTTAAG 1 cut(s) 38
BssMI GATC 2 cut(s) 54, 378
Bst4CI ACNGT 1 cut(s) 214
BstAFI CTTAAG 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 3 cut(s) 27, 78, 191
BstEII GGTNACC 2 cut(s) 286, 339
BstKTI GATC 2 cut(s) 57, 381
BstMBI GATC 2 cut(s) 54, 378
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstPI GGTNACC 2 cut(s) 286, 339
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 10
BstX2I RGATCY 1 cut(s) 54
BstYI RGATCY 1 cut(s) 54
BsuRI GGCC 1 cut(s) 323
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 202
CaiI CAGNNNCTG 1 cut(s) 85
CviAII CATG 4 cut(s) 146, 151, 256, 360
CviJI RGCY 7 cut(s) 36, 77, 85, 136, 142, 323, 371
CviKI_1 RGCY 7 cut(s) 36, 77, 85, 136, 142, 323, 371
DdeI CTNAG 3 cut(s) 27, 78, 191
DpnI GATC 2 cut(s) 56, 380
DpnII GATC 2 cut(s) 54, 378
Eco147I AGGCCT 1 cut(s) 323
Eco91I GGTNACC 2 cut(s) 286, 339
EcoO65I GGTNACC 2 cut(s) 286, 339
EcoT22I ATGCAT 1 cut(s) 361
FaeI CATG 4 cut(s) 149, 154, 259, 363
FalI AAGNNNNNCTT 4 cut(s) 32, 64, 308, 340
FaqI GGGAC 1 cut(s) 116
FatI CATG 4 cut(s) 145, 150, 255, 359
FbaI TGATCA 1 cut(s) 378
Fnu4HI GCNGC 1 cut(s) 24
Fsp4HI GCNGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 1 cut(s) 323
HapII CCGG 2 cut(s) 329, 344
Hin1II CATG 4 cut(s) 149, 154, 259, 363
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HindIII AAGCTT 1 cut(s) 369
HinfI GANTC 3 cut(s) 104, 176, 221
HpaII CCGG 2 cut(s) 329, 344
HphI GGTGA 2 cut(s) 298, 333
Hpy166II GTNNAC 2 cut(s) 225, 250
Hpy188I TCNGA 2 cut(s) 81, 109
Hpy188III TCNNGA 5 cut(s) 49, 97, 119, 193, 261
Hpy8I GTNNAC 2 cut(s) 225, 250
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 3 cut(s) 68, 182, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 3 cut(s) 27, 78, 191
Hsp92II CATG 4 cut(s) 149, 154, 259, 363
Ksp22I TGATCA 1 cut(s) 378
Kzo9I GATC 2 cut(s) 54, 378
LpnPI CCDG 5 cut(s) 178, 186, 246, 342, 357
Lsp1109I GCAGC 1 cut(s) 10
MaeIII GTNAC 4 cut(s) 208, 286, 339, 387
MalI GATC 2 cut(s) 56, 380
MboI GATC 2 cut(s) 54, 378
MboII GAAGA 4 cut(s) 37, 64, 136, 364
MflI RGATCY 1 cut(s) 54
MluCI AATT 1 cut(s) 63
MlyI GAGTC 2 cut(s) 98, 230
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 5 cut(s) 93, 126, 153, 277, 313
Mph1103I ATGCAT 1 cut(s) 361
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 1 cut(s) 39
MspCI CTTAAG 1 cut(s) 38
MspI CCGG 2 cut(s) 329, 344
Mva1269I GAATGC 2 cut(s) 25, 361
MwoI GCNNNNNNNGC 1 cut(s) 74
NdeII GATC 2 cut(s) 54, 378
NlaIII CATG 4 cut(s) 149, 154, 259, 363
NmuCI GTSAC 2 cut(s) 286, 339
NsiI ATGCAT 1 cut(s) 361
PceI AGGCCT 1 cut(s) 323
PctI GAATGC 2 cut(s) 25, 361
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 1 cut(s) 25
PleI GAGTC 2 cut(s) 98, 229
PpsI GAGTC 2 cut(s) 98, 229
PspEI GGTNACC 2 cut(s) 286, 339
PstI CTGCAG 1 cut(s) 184
PstNI CAGNNNCTG 1 cut(s) 85
PsuI RGATCY 1 cut(s) 54
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 2 cut(s) 54, 378
SchI GAGTC 2 cut(s) 98, 230
SetI ASST 8 cut(s) 79, 87, 138, 210, 230, 244, 288, 373
SfcI CTRYAG 1 cut(s) 180
SmlI CTYRAG 4 cut(s) 38, 97, 119, 137
SmoI CTYRAG 4 cut(s) 38, 97, 119, 137
Sse9I AATT 1 cut(s) 63
SseBI AGGCCT 1 cut(s) 323
StuI AGGCCT 1 cut(s) 323
TaaI ACNGT 1 cut(s) 214
TasI AATT 1 cut(s) 63
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 1 cut(s) 219
TseFI GTSAC 2 cut(s) 286, 339
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 2 cut(s) 286, 339
TspDTI ATGAA 4 cut(s) 26, 244, 288, 365
TspRI CASTG 1 cut(s) 219
Vha464I CTTAAG 1 cut(s) 38
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 86
Zsp2I ATGCAT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.