Rroxscaffold_7G00207870

Plastid division protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0014520
Physical Location & Seq
Reverse (-)
57857722 .. 57859084
1363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00207870.1

Sequence Viewer

Length: 429 bp
ATGGAGGGCAAAGGTTTCACAGAAGAGCAGGAAGCACTGGTGGTGAAGTCCTGGGCTGTAATGAAGAAGAATTCTGCTGAATTGGGTCTTCAATTCTTCTTGAAGATCTTTGAAATTGCACCATCAGCTCAGAAGCTGTTTTCATTCTTGAAGGACTCTGATATTCCTCTGGAGAAGAACCCCAAGCTCAAGCCTCATGCTATGTCTGTCTTTGTTATGACTTGTGAATCGGCGGTTCAACTCCGTAAAGCAGGCAAAGTTACAGTGAGGGAATCAACGTTGAAAAGGTTAGGTGGAGTCCATTTCAAGGCCGGAGTAGTGGATGAACATTATGAGGTGACCAAGTTTGCATTGTTGGAAACCATAAAAGAAGCAGTACCAGAGATGTGGTCACCAGAGATGAAGAGTGCATGGGGGAGAAGCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Globin

Protein Analysis

142

Amino Acids

15.97

Weight (kDa)

8.97

Isoelectric Point (pI)

31.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Globin PF00042 31 - 140 3.6e-18 Globin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014520)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16060
fragaria_vesca FvH4_2g07770
malus_domestica MD00G1018700.v1.1 MD00G1018800.v1.1 MD10G1083900.v1.1
prunus_persica Prupe.8G107300_v2.0.a1
pyrus_communis pycom05g06280 pycom10g06600
rosa_chinensis RchiOBHm_Chr6g0262171
rosa_laevigata RLG00000014451
rosa_multiflora Rmu_sc0002510.1_g000017
rosa_roxburghii Rroxscaffold_7G00207870
rosa_rugosa Rorug05G0595200
rosa_samantha Rh6AG115200 Rh6BG109300 Rh6DG097300
rosa_wichuraiana Rw6G010030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 233
AclI AACGTT 1 cut(s) 278
AcsI RAATTY 1 cut(s) 70
AfaI GTAC 1 cut(s) 378
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 7 cut(s) 92, 103, 113, 151, 239, 283, 307
AjnI CCWGG 1 cut(s) 50
AluBI AGCT 4 cut(s) 128, 136, 187, 423
AluI AGCT 4 cut(s) 128, 136, 187, 423
AlwNI CAGNNNCTG 1 cut(s) 136
AoxI GGCC 1 cut(s) 309
ApoI RAATTY 1 cut(s) 70
AsuHPI GGTGA 3 cut(s) 55, 349, 384
BbsI GAAGAC 1 cut(s) 80
BccI CCATC 1 cut(s) 130
BciT130I CCWGG 1 cut(s) 52
BglII AGATCT 1 cut(s) 105
Bme1390I CCNGG 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 52
BpiI GAAGAC 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse1I ACTGG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 52
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 42
BshFI GGCC 1 cut(s) 311
BsiSI CCGG 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 307
BsnI GGCC 1 cut(s) 311
Bsp143I GATC 1 cut(s) 105
BspACI CCGC 1 cut(s) 233
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 1 cut(s) 142
BspQI GCTCTTC 1 cut(s) 18
BsrI ACTGG 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 2 cut(s) 18, 398
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 1 cut(s) 129
BstEII GGTNACC 2 cut(s) 337, 390
BstF5I GGATG 1 cut(s) 328
BstKTI GATC 1 cut(s) 108
BstMBI GATC 1 cut(s) 105
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 52
BstPI GGTNACC 2 cut(s) 337, 390
BstSCI CCNGG 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 105
BstXI CCANNNNNNTGG 1 cut(s) 387
BstYI RGATCY 1 cut(s) 105
BsuRI GGCC 1 cut(s) 311
BtsCI GGATG 1 cut(s) 328
BtsIMutI CAGTG 2 cut(s) 35, 270
Cac8I GCNNGC 1 cut(s) 253
CaiI CAGNNNCTG 1 cut(s) 136
Csp6I GTAC 1 cut(s) 377
CviAII CATG 2 cut(s) 197, 411
CviJI RGCY 7 cut(s) 56, 128, 136, 187, 193, 311, 423
CviKI_1 RGCY 7 cut(s) 56, 128, 136, 187, 193, 311, 423
CviQI GTAC 1 cut(s) 377
DdeI CTNAG 1 cut(s) 129
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
Eam1104I CTCTTC 2 cut(s) 18, 398
EarI CTCTTC 2 cut(s) 18, 398
Eco91I GGTNACC 2 cut(s) 337, 390
EcoO65I GGTNACC 2 cut(s) 337, 390
EcoRI GAATTC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 50
FaeI CATG 2 cut(s) 200, 414
FaiI YATR 7 cut(s) 198, 203, 218, 333, 365, 412, 427
FatI CATG 2 cut(s) 196, 410
FokI GGATG 1 cut(s) 335
GsuI CTGGAG 1 cut(s) 191
HaeIII GGCC 1 cut(s) 311
HapII CCGG 1 cut(s) 312
Hin1II CATG 2 cut(s) 200, 414
HindIII AAGCTT 1 cut(s) 421
HinfI GANTC 4 cut(s) 155, 227, 272, 297
HpaII CCGG 1 cut(s) 312
HphI GGTGA 3 cut(s) 55, 349, 384
Hpy188I TCNGA 2 cut(s) 132, 160
Hpy188III TCNNGA 3 cut(s) 100, 148, 170
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 3 cut(s) 119, 350, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 278
Hsp92II CATG 2 cut(s) 200, 414
Kzo9I GATC 1 cut(s) 105
LguI GCTCTTC 1 cut(s) 18
LpnPI CCDG 9 cut(s) 14, 23, 37, 64, 155, 237, 325, 393, 408
MaeII ACGT 1 cut(s) 278
MaeIII GTNAC 3 cut(s) 259, 337, 390
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 8 cut(s) 35, 76, 79, 80, 88, 115, 187, 415
MflI RGATCY 1 cut(s) 105
MluCI AATT 4 cut(s) 70, 80, 92, 114
MlyI GAGTC 2 cut(s) 149, 306
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 4 cut(s) 177, 204, 261, 328
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 52
MvaI CCWGG 1 cut(s) 52
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 1 cut(s) 105
NlaIII CATG 2 cut(s) 200, 414
NmuCI GTSAC 2 cut(s) 337, 390
PciSI GCTCTTC 1 cut(s) 18
PfeI GAWTC 2 cut(s) 227, 272
PleI GAGTC 2 cut(s) 149, 305
PpsI GAGTC 2 cut(s) 149, 305
Psp1406I AACGTT 1 cut(s) 278
Psp6I CCWGG 1 cut(s) 50
PspEI GGTNACC 2 cut(s) 337, 390
PspGI CCWGG 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 136
PsuI RGATCY 1 cut(s) 105
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
SapI GCTCTTC 1 cut(s) 18
Sau3AI GATC 1 cut(s) 105
SchI GAGTC 2 cut(s) 149, 306
ScrFI CCNGG 1 cut(s) 52
SetI ASST 9 cut(s) 16, 130, 138, 189, 281, 290, 295, 339, 425
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 4 cut(s) 70, 80, 92, 114
SsiI CCGC 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 50
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 1 cut(s) 281
TasI AATT 4 cut(s) 70, 80, 92, 114
TfiI GAWTC 2 cut(s) 227, 272
TscAI CASTG 2 cut(s) 42, 270
TseFI GTSAC 2 cut(s) 337, 390
Tsp45I GTSAC 2 cut(s) 337, 390
TspDTI ATGAA 4 cut(s) 77, 132, 339, 416
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 2 cut(s) 42, 270
XapI RAATTY 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.