Prupe.8G107300_v2.0.a1

Belongs to the globin family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
13826572 .. 13828228
1657 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G107300.1

Sequence Viewer

Length: 474 bp
ATGGAAGGGAAAGTTTTCACAGAAGAGCAGGAAACATTGGTGGCCAAGTCATGGGGTGTGATGAAGAAGAATTCTGCTGAATTGGGTCTTAAATTCTTCCTGAAGATATTTGAAATTGCACCATCAGCTCAGAAGCTGTTCTCTTTCTTGAAGGACTCTGATATTCCTCTGGAGAAGAACCCAAAGCTCAAGCCCCATGCTATTTCTGTCTTTGTTATGACTTGTGAATCAGCCGTTCAACTTCGGAAATCAGGCAAAGTCACAGTGAGAGAATCAACCTTGAAAAGATTAGGTGGAGTACACTTCAAATCTGGAGTGGTCGATGAACATTATGAGGTCACTAAATTCGCATTGTTGGAAACTATAAAAGAAGCAGTGCCCGAAATGTGGTCCCTAAAGATGAAGAATGCATGGGGAGAAGCTTATGATCAGTTGGTTGCTGCTATAAAAGCAGAAATGAAGCCCTCCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

158

Amino Acids

17.65

Weight (kDa)

9.08

Isoelectric Point (pI)

23.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014520)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16060
fragaria_vesca FvH4_2g07770
malus_domestica MD00G1018700.v1.1 MD00G1018800.v1.1 MD10G1083900.v1.1
prunus_persica Prupe.8G107300_v2.0.a1
pyrus_communis pycom05g06280 pycom10g06600
rosa_chinensis RchiOBHm_Chr6g0262171
rosa_laevigata RLG00000014451
rosa_multiflora Rmu_sc0002510.1_g000017
rosa_roxburghii Rroxscaffold_7G00207870
rosa_rugosa Rorug05G0595200
rosa_samantha Rh6AG115200 Rh6BG109300 Rh6DG097300
rosa_wichuraiana Rw6G010030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 51
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 3 cut(s) 70, 92, 344
AcuI CTGAAG 1 cut(s) 122
AfaI GTAC 1 cut(s) 300
AfiI CCNNNNNNNGG 2 cut(s) 51, 387
AgsI TTSAA 5 cut(s) 113, 151, 239, 283, 307
AluBI AGCT 4 cut(s) 128, 136, 187, 422
AluI AGCT 4 cut(s) 128, 136, 187, 422
AlwNI CAGNNNCTG 1 cut(s) 136
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 3 cut(s) 70, 92, 344
Asp700I GAANNNNTTC 2 cut(s) 14, 137
AspS9I GGNCC 1 cut(s) 390
AvaII GGWCC 1 cut(s) 390
BaeGI GKGCMC 1 cut(s) 381
BalI TGGCCA 1 cut(s) 44
BbvI GCAGC 1 cut(s) 427
BccI CCATC 1 cut(s) 130
BceAI ACGGC 1 cut(s) 218
BclI TGATCA 1 cut(s) 427
BisI GCNGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 442
Bme18I GGWCC 1 cut(s) 390
BmgT120I GGNCC 1 cut(s) 390
BmiI GGNNCC 1 cut(s) 392
BpmI CTGGAG 2 cut(s) 191, 333
BpuEI CTTGAG 1 cut(s) 173
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 387
BseLI CCNNNNNNNGG 2 cut(s) 51, 387
BseMII CTCAG 1 cut(s) 143
BseSI GKGCMC 1 cut(s) 381
BseXI GCAGC 1 cut(s) 427
BshFI GGCC 1 cut(s) 44
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 2 cut(s) 51, 387
BsmFI GGGAC 1 cut(s) 376
BsmI GAATGC 1 cut(s) 412
BsnI GGCC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 1 cut(s) 427
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 392
BspQI GCTCTTC 1 cut(s) 18
BssMI GATC 1 cut(s) 427
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 1 cut(s) 18
BstDEI CTNAG 1 cut(s) 129
BstKTI GATC 1 cut(s) 430
BstMBI GATC 1 cut(s) 427
BstMWI GCNNNNNNNGC 2 cut(s) 125, 449
BstSLI GKGCMC 1 cut(s) 381
BstV1I GCAGC 1 cut(s) 427
BsuRI GGCC 1 cut(s) 44
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 2 cut(s) 270, 381
CaiI CAGNNNCTG 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 390
Csp6I GTAC 1 cut(s) 299
CviAII CATG 3 cut(s) 51, 197, 411
CviJI RGCY 8 cut(s) 44, 128, 136, 187, 193, 233, 422, 463
CviKI_1 RGCY 8 cut(s) 44, 128, 136, 187, 193, 233, 422, 463
CviQI GTAC 1 cut(s) 299
DdeI CTNAG 1 cut(s) 129
DpnI GATC 1 cut(s) 429
DpnII GATC 1 cut(s) 427
EaeI YGGCCR 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 390
Eco57I CTGAAG 1 cut(s) 122
EcoRI GAATTC 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 412
FaeI CATG 3 cut(s) 54, 200, 414
FaiI YATR 9 cut(s) 52, 198, 218, 333, 365, 412, 426, 446, 472
FaqI GGGAC 1 cut(s) 376
FatI CATG 3 cut(s) 50, 196, 410
FbaI TGATCA 1 cut(s) 427
Fnu4HI GCNGC 1 cut(s) 441
Fsp4HI GCNGC 1 cut(s) 441
GluI GCNGC 1 cut(s) 441
GsuI CTGGAG 2 cut(s) 191, 333
HaeIII GGCC 1 cut(s) 44
Hin1II CATG 3 cut(s) 54, 200, 414
HindIII AAGCTT 1 cut(s) 420
HinfI GANTC 3 cut(s) 155, 227, 272
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 3 cut(s) 132, 160, 246
Hpy188III TCNNGA 4 cut(s) 100, 148, 170, 312
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 2 cut(s) 119, 410
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 449
HpyF3I CTNAG 1 cut(s) 129
Hsp92II CATG 3 cut(s) 54, 200, 414
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 1 cut(s) 427
LguI GCTCTTC 1 cut(s) 18
LpnPI CCDG 5 cut(s) 14, 113, 155, 237, 297
Lsp1109I GCAGC 1 cut(s) 427
MaeIII GTNAC 2 cut(s) 259, 337
MalI GATC 1 cut(s) 429
MboI GATC 1 cut(s) 427
MboII GAAGA 7 cut(s) 35, 76, 79, 88, 115, 187, 415
MhlI GDGCHC 1 cut(s) 381
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 5 cut(s) 70, 80, 92, 114, 344
MluNI TGGCCA 1 cut(s) 44
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 2 cut(s) 177, 328
Mox20I TGGCCA 1 cut(s) 44
Mph1103I ATGCAT 1 cut(s) 412
MroXI GAANNNNTTC 2 cut(s) 14, 137
MscI TGGCCA 1 cut(s) 44
MseI TTAA 1 cut(s) 90
Msp20I TGGCCA 1 cut(s) 44
Mva1269I GAATGC 1 cut(s) 412
MwoI GCNNNNNNNGC 2 cut(s) 125, 449
NdeII GATC 1 cut(s) 427
NlaIII CATG 3 cut(s) 54, 200, 414
NlaIV GGNNCC 1 cut(s) 392
NmuCI GTSAC 2 cut(s) 259, 337
NsiI ATGCAT 1 cut(s) 412
PciSI GCTCTTC 1 cut(s) 18
PctI GAATGC 1 cut(s) 412
PdmI GAANNNNTTC 2 cut(s) 14, 137
PfeI GAWTC 2 cut(s) 227, 272
PflMI CCANNNNNTGG 1 cut(s) 51
PkrI GCNGC 1 cut(s) 442
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 392
PspPI GGNCC 1 cut(s) 390
PstNI CAGNNNCTG 1 cut(s) 136
RsaI GTAC 1 cut(s) 300
RsaNI GTAC 1 cut(s) 299
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 1 cut(s) 441
Sau3AI GATC 1 cut(s) 427
Sau96I GGNCC 1 cut(s) 390
SchI GAGTC 1 cut(s) 149
SduI GDGCHC 1 cut(s) 381
SetI ASST 7 cut(s) 130, 138, 189, 281, 295, 339, 424
SinI GGWCC 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 5 cut(s) 70, 80, 92, 114, 344
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 1 cut(s) 321
TasI AATT 5 cut(s) 70, 80, 92, 114, 344
TatI WGTACW 1 cut(s) 298
TfiI GAWTC 2 cut(s) 227, 272
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 2 cut(s) 270, 381
TseFI GTSAC 2 cut(s) 259, 337
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 2 cut(s) 259, 337
TspDTI ATGAA 4 cut(s) 77, 339, 416, 473
TspRI CASTG 2 cut(s) 270, 381
Van91I CCANNNNNTGG 1 cut(s) 51
VpaK11BI GGWCC 1 cut(s) 390
XapI RAATTY 3 cut(s) 70, 92, 344
XmnI GAANNNNTTC 2 cut(s) 14, 137
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.