MD00G1018700.v1.1

Belongs to the globin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0014520
Physical Location & Seq
Reverse (-)
3198553 .. 3199867
1315 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1018700.v1.1.491

Sequence Viewer

Length: 477 bp
ATGGAAGGCAAAGTTTTCACAGAAGAACAGGAAACACTGGTGGTGAAGTCATGGGGTGTGATGAAGAAGAACGCTGCTGAATTGGGCCTTAAGTTCTTCTTAAAGATCTTTGAAATTGCACCATCAGCTCAGAAGCTGTTCTCTTTCTTGAGGGACTCTGACATTCCTCTTGAGAAGAACCCAAAGCTCAAGCCTCACGCCATGTCTGTATTTGTTATGACTTGTGAATCTGCAGTTCAACTCAGGAAAGCAGGCAAGGTTACAGTGAGAGAGTCAACCTTGAAAAGATTAGGTGGTGTCCACTTCAAGTCTGGAGTGGTAGATGAACATTATGAGGTGACCAAGTTCGCATTGTTGGAAACCATAAAGGAGGCCTTACCGGAAATGTGGTCACCGGAGATGAAGAATGCTTGGGGAGAAGCTTATGATCAGTTGGTTGCTGCTATAAAATCAGAAATGAAGCCTCCCCTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Globin

Protein Analysis

159

Amino Acids

17.84

Weight (kDa)

8.57

Isoelectric Point (pI)

28.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Globin PF00042 31 - 149 8.7e-21 Globin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014520)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16060
fragaria_vesca FvH4_2g07770
malus_domestica MD00G1018700.v1.1 MD00G1018800.v1.1 MD10G1083900.v1.1
prunus_persica Prupe.8G107300_v2.0.a1
pyrus_communis pycom05g06280 pycom10g06600
rosa_chinensis RchiOBHm_Chr6g0262171
rosa_laevigata RLG00000014451
rosa_multiflora Rmu_sc0002510.1_g000017
rosa_roxburghii Rroxscaffold_7G00207870
rosa_rugosa Rorug05G0595200
rosa_samantha Rh6AG115200 Rh6BG109300 Rh6DG097300
rosa_wichuraiana Rw6G010030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflII CTTAAG 1 cut(s) 89
AgsI TTSAA 4 cut(s) 113, 239, 283, 307
AluBI AGCT 4 cut(s) 128, 136, 187, 422
AluI AGCT 4 cut(s) 128, 136, 187, 422
AlwNI CAGNNNCTG 1 cut(s) 136
AoxI GGCC 2 cut(s) 85, 372
ApeKI GCWGC 2 cut(s) 74, 440
Asp700I GAANNNNTTC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 85
AsuHPI GGTGA 3 cut(s) 55, 349, 384
BbvI GCAGC 2 cut(s) 61, 427
BccI CCATC 1 cut(s) 130
BclI TGATCA 1 cut(s) 427
BfmI CTRYAG 1 cut(s) 231
BfrI CTTAAG 1 cut(s) 89
BglII AGATCT 1 cut(s) 105
BisI GCNGC 2 cut(s) 75, 441
BlsI GCNGC 2 cut(s) 76, 442
BmgT120I GGNCC 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 333
BpuEI CTTGAG 3 cut(s) 169, 173, 191
BsaWI WCCGGW 2 cut(s) 379, 394
Bse1I ACTGG 1 cut(s) 42
BseMII CTCAG 2 cut(s) 143, 256
BseNI ACTGG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 61, 427
BshFI GGCC 2 cut(s) 87, 374
BsiSI CCGG 2 cut(s) 380, 395
BslFI GGGAC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 412
BsnI GGCC 2 cut(s) 87, 374
Bsp143I GATC 2 cut(s) 105, 427
BspANI GGCC 2 cut(s) 87, 374
BspCNI CTCAG 2 cut(s) 142, 255
BspMAI CTGCAG 1 cut(s) 235
BspTI CTTAAG 1 cut(s) 89
BsrI ACTGG 1 cut(s) 42
BssMI GATC 2 cut(s) 105, 427
Bst4CI ACNGT 1 cut(s) 265
BstAFI CTTAAG 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 2 cut(s) 129, 242
BstEII GGTNACC 2 cut(s) 337, 390
BstKTI GATC 2 cut(s) 108, 430
BstMBI GATC 2 cut(s) 105, 427
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstPI GGTNACC 2 cut(s) 337, 390
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 2 cut(s) 61, 427
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
BsuRI GGCC 2 cut(s) 87, 374
BtsIMutI CAGTG 2 cut(s) 35, 270
Cac8I GCNNGC 1 cut(s) 253
CaiI CAGNNNCTG 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 85
CviAII CATG 2 cut(s) 51, 202
CviJI RGCY 8 cut(s) 87, 128, 136, 187, 193, 374, 422, 463
CviKI_1 RGCY 8 cut(s) 87, 128, 136, 187, 193, 374, 422, 463
DdeI CTNAG 2 cut(s) 129, 242
DpnI GATC 2 cut(s) 107, 429
DpnII GATC 2 cut(s) 105, 427
Eco147I AGGCCT 1 cut(s) 374
Eco91I GGTNACC 2 cut(s) 337, 390
EcoO65I GGTNACC 2 cut(s) 337, 390
FaeI CATG 2 cut(s) 54, 205
FaiI YATR 7 cut(s) 52, 203, 218, 333, 365, 426, 446
FalI AAGNNNNNCTT 4 cut(s) 83, 115, 359, 391
FaqI GGGAC 1 cut(s) 167
FatI CATG 2 cut(s) 50, 201
FbaI TGATCA 1 cut(s) 427
Fnu4HI GCNGC 2 cut(s) 75, 441
Fsp4HI GCNGC 2 cut(s) 75, 441
GluI GCNGC 2 cut(s) 75, 441
GsuI CTGGAG 1 cut(s) 333
HaeIII GGCC 2 cut(s) 87, 374
HapII CCGG 2 cut(s) 380, 395
Hin1II CATG 2 cut(s) 54, 205
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HindIII AAGCTT 1 cut(s) 420
HinfI GANTC 3 cut(s) 155, 227, 272
HpaII CCGG 2 cut(s) 380, 395
HphI GGTGA 3 cut(s) 55, 349, 384
Hpy166II GTNNAC 2 cut(s) 276, 301
Hpy188I TCNGA 3 cut(s) 132, 160, 454
Hpy188III TCNNGA 4 cut(s) 148, 170, 244, 312
Hpy8I GTNNAC 2 cut(s) 276, 301
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 2 cut(s) 119, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 2 cut(s) 129, 242
Hsp92II CATG 2 cut(s) 54, 205
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 2 cut(s) 105, 427
LpnPI CCDG 7 cut(s) 14, 23, 229, 237, 297, 393, 408
Lsp1109I GCAGC 2 cut(s) 61, 427
MaeIII GTNAC 3 cut(s) 259, 337, 390
MalI GATC 2 cut(s) 107, 429
MboI GATC 2 cut(s) 105, 427
MboII GAAGA 6 cut(s) 35, 76, 79, 88, 187, 415
MflI RGATCY 1 cut(s) 105
MluCI AATT 3 cut(s) 80, 114, 472
MlyI GAGTC 2 cut(s) 149, 281
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 6 cut(s) 144, 177, 204, 328, 364, 474
MroXI GAANNNNTTC 1 cut(s) 137
MseI TTAA 3 cut(s) 90, 101, 471
MspCI CTTAAG 1 cut(s) 89
MspI CCGG 2 cut(s) 380, 395
Mva1269I GAATGC 1 cut(s) 412
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 2 cut(s) 105, 427
NlaIII CATG 2 cut(s) 54, 205
NmuCI GTSAC 2 cut(s) 337, 390
PceI AGGCCT 1 cut(s) 374
PctI GAATGC 1 cut(s) 412
PdmI GAANNNNTTC 1 cut(s) 137
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 2 cut(s) 76, 442
PleI GAGTC 2 cut(s) 149, 280
PpsI GAGTC 2 cut(s) 149, 280
PspEI GGTNACC 2 cut(s) 337, 390
PspPI GGNCC 1 cut(s) 85
PstI CTGCAG 1 cut(s) 235
PstNI CAGNNNCTG 1 cut(s) 136
PsuI RGATCY 1 cut(s) 105
SaqAI TTAA 3 cut(s) 90, 101, 471
SatI GCNGC 2 cut(s) 75, 441
Sau3AI GATC 2 cut(s) 105, 427
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 2 cut(s) 149, 281
SetI ASST 8 cut(s) 130, 138, 189, 261, 281, 295, 339, 424
SfcI CTRYAG 1 cut(s) 231
SmlI CTYRAG 4 cut(s) 89, 148, 170, 188
SmoI CTYRAG 4 cut(s) 89, 148, 170, 188
Sse9I AATT 3 cut(s) 80, 114, 472
SseBI AGGCCT 1 cut(s) 374
StuI AGGCCT 1 cut(s) 374
TaaI ACNGT 1 cut(s) 265
TasI AATT 3 cut(s) 80, 114, 472
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 3 cut(s) 90, 101, 471
Tru9I TTAA 3 cut(s) 90, 101, 471
TscAI CASTG 2 cut(s) 42, 270
TseFI GTSAC 2 cut(s) 337, 390
TseI GCWGC 2 cut(s) 74, 440
Tsp45I GTSAC 2 cut(s) 337, 390
TspDTI ATGAA 4 cut(s) 77, 339, 416, 473
TspRI CASTG 2 cut(s) 42, 270
Vha464I CTTAAG 1 cut(s) 89
XcmI CCANNNNNNNNNTGG 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.