pycom05g06280

Belongs to the globin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0014520
Physical Location & Seq
Forward (+)
8443244 .. 8444088
845 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g06280.1

Sequence Viewer

Length: 468 bp
ATGGAAGGCAAAGTTTTCACAGAAGAACAGGAAACACTGGTCGTGAAGTCATGGGGTGTGATGAAGCAGAATGCTGCTGATTTGAGCCTTAAGTTCTTCTTGAAGATCTTTGAAATTGCACCATCAGCTCAGAAGCTGTTCTCTTTCTTGAGGGACTCTAATATTCCTCTTGAGAAGAACCCAAAGCTCAAGCCTCATGCCATGTCTGTATTTGTTATGCAGCAGTTCAACTCAGGAAAAGCAGGCAAGGTTACAGTGAGAGAGTCAACCTTGAAAAGATTAGGTGGTGTCCACTTCAAGTCTGGAGTGGTAGATGAACATTATGAGGTGACCAAGTTCGCATTGTTGGAAACCATAAAGGAGGCCGTACCGGAAATGTGGTCACCGGAGATGAAGAATGCATGGGGAGAAGCGTATGATCAGTTGGTTACTGCTATAAAATCAGAAATGAAGCCTCCCCTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Globin

Protein Analysis

156

Amino Acids

17.55

Weight (kDa)

8.73

Isoelectric Point (pI)

29.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Globin PF00042 31 - 146 1.5e-18 Globin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014520)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16060
fragaria_vesca FvH4_2g07770
malus_domestica MD00G1018700.v1.1 MD00G1018800.v1.1 MD10G1083900.v1.1
prunus_persica Prupe.8G107300_v2.0.a1
pyrus_communis pycom05g06280 pycom10g06600
rosa_chinensis RchiOBHm_Chr6g0262171
rosa_laevigata RLG00000014451
rosa_multiflora Rmu_sc0002510.1_g000017
rosa_roxburghii Rroxscaffold_7G00207870
rosa_rugosa Rorug05G0595200
rosa_samantha Rh6AG115200 Rh6BG109300 Rh6DG097300
rosa_wichuraiana Rw6G010030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 369
AflII CTTAAG 1 cut(s) 89
AgsI TTSAA 5 cut(s) 103, 113, 229, 274, 298
AluBI AGCT 3 cut(s) 128, 136, 187
AluI AGCT 3 cut(s) 128, 136, 187
AlwNI CAGNNNCTG 1 cut(s) 136
AoxI GGCC 1 cut(s) 363
ApeKI GCWGC 2 cut(s) 74, 220
Asp700I GAANNNNTTC 1 cut(s) 137
AsuHPI GGTGA 2 cut(s) 340, 375
BbvI GCAGC 2 cut(s) 61, 232
BccI CCATC 1 cut(s) 130
BceAI ACGGC 1 cut(s) 350
BclI TGATCA 1 cut(s) 418
BfrI CTTAAG 1 cut(s) 89
BglII AGATCT 1 cut(s) 105
BisI GCNGC 2 cut(s) 75, 221
BlsI GCNGC 2 cut(s) 76, 222
BpmI CTGGAG 1 cut(s) 324
BpuEI CTTGAG 3 cut(s) 169, 173, 191
BsaWI WCCGGW 2 cut(s) 370, 385
Bse1I ACTGG 1 cut(s) 42
BseMII CTCAG 2 cut(s) 143, 246
BseNI ACTGG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 61, 232
BshFI GGCC 1 cut(s) 365
BsiSI CCGG 2 cut(s) 371, 386
BslFI GGGAC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 167
BsmI GAATGC 2 cut(s) 76, 403
BsnI GGCC 1 cut(s) 365
Bsp143I GATC 2 cut(s) 105, 418
BspANI GGCC 1 cut(s) 365
BspCNI CTCAG 2 cut(s) 142, 245
BspTI CTTAAG 1 cut(s) 89
BsrI ACTGG 1 cut(s) 42
BssMI GATC 2 cut(s) 105, 418
Bst4CI ACNGT 1 cut(s) 256
BstAFI CTTAAG 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 2 cut(s) 129, 232
BstEII GGTNACC 2 cut(s) 328, 381
BstKTI GATC 2 cut(s) 108, 421
BstMBI GATC 2 cut(s) 105, 418
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstPI GGTNACC 2 cut(s) 328, 381
BstV1I GCAGC 2 cut(s) 61, 232
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
BsuRI GGCC 1 cut(s) 365
BtsIMutI CAGTG 2 cut(s) 35, 261
Cac8I GCNNGC 1 cut(s) 244
CaiI CAGNNNCTG 1 cut(s) 136
Csp6I GTAC 1 cut(s) 368
CviAII CATG 4 cut(s) 51, 197, 202, 402
CviJI RGCY 7 cut(s) 87, 128, 136, 187, 193, 365, 454
CviKI_1 RGCY 7 cut(s) 87, 128, 136, 187, 193, 365, 454
CviQI GTAC 1 cut(s) 368
DdeI CTNAG 2 cut(s) 129, 232
DpnI GATC 2 cut(s) 107, 420
DpnII GATC 2 cut(s) 105, 418
Eco91I GGTNACC 2 cut(s) 328, 381
EcoO65I GGTNACC 2 cut(s) 328, 381
EcoT22I ATGCAT 1 cut(s) 403
FaeI CATG 4 cut(s) 54, 200, 205, 405
FaiI YATR 9 cut(s) 52, 198, 203, 218, 324, 356, 403, 417, 437
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FaqI GGGAC 1 cut(s) 167
FatI CATG 4 cut(s) 50, 196, 201, 401
FbaI TGATCA 1 cut(s) 418
Fnu4HI GCNGC 2 cut(s) 75, 221
Fsp4HI GCNGC 2 cut(s) 75, 221
GluI GCNGC 2 cut(s) 75, 221
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 1 cut(s) 365
HapII CCGG 2 cut(s) 371, 386
Hin1II CATG 4 cut(s) 54, 200, 205, 405
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HinfI GANTC 2 cut(s) 155, 263
HpaII CCGG 2 cut(s) 371, 386
HphI GGTGA 2 cut(s) 340, 375
Hpy166II GTNNAC 2 cut(s) 267, 292
Hpy188I TCNGA 2 cut(s) 132, 445
Hpy188III TCNNGA 6 cut(s) 43, 100, 148, 170, 234, 303
Hpy8I GTNNAC 2 cut(s) 267, 292
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4V TGCA 3 cut(s) 119, 220, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 2 cut(s) 129, 232
Hsp92II CATG 4 cut(s) 54, 200, 205, 405
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 2 cut(s) 105, 418
LpnPI CCDG 7 cut(s) 14, 23, 219, 228, 288, 384, 399
Lsp1109I GCAGC 2 cut(s) 61, 232
MaeIII GTNAC 4 cut(s) 250, 328, 381, 427
MalI GATC 2 cut(s) 107, 420
MboI GATC 2 cut(s) 105, 418
MboII GAAGA 5 cut(s) 35, 88, 115, 187, 406
MflI RGATCY 1 cut(s) 105
MluCI AATT 2 cut(s) 114, 463
MlyI GAGTC 2 cut(s) 149, 272
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 6 cut(s) 144, 177, 204, 319, 355, 465
Mph1103I ATGCAT 1 cut(s) 403
MroXI GAANNNNTTC 1 cut(s) 137
MseI TTAA 2 cut(s) 90, 462
MspCI CTTAAG 1 cut(s) 89
MspI CCGG 2 cut(s) 371, 386
Mva1269I GAATGC 2 cut(s) 76, 403
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 2 cut(s) 105, 418
NlaIII CATG 4 cut(s) 54, 200, 205, 405
NmuCI GTSAC 2 cut(s) 328, 381
NsiI ATGCAT 1 cut(s) 403
PctI GAATGC 2 cut(s) 76, 403
PdmI GAANNNNTTC 1 cut(s) 137
PkrI GCNGC 2 cut(s) 76, 222
PleI GAGTC 2 cut(s) 149, 271
PpsI GAGTC 2 cut(s) 149, 271
PspEI GGTNACC 2 cut(s) 328, 381
PstNI CAGNNNCTG 1 cut(s) 136
PsuI RGATCY 1 cut(s) 105
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
SaqAI TTAA 2 cut(s) 90, 462
SatI GCNGC 2 cut(s) 75, 221
Sau3AI GATC 2 cut(s) 105, 418
SchI GAGTC 2 cut(s) 149, 272
SetI ASST 7 cut(s) 130, 138, 189, 252, 272, 286, 330
SmlI CTYRAG 4 cut(s) 89, 148, 170, 188
SmoI CTYRAG 4 cut(s) 89, 148, 170, 188
Sse9I AATT 2 cut(s) 114, 463
SspI AATATT 1 cut(s) 163
TaaI ACNGT 1 cut(s) 256
TasI AATT 2 cut(s) 114, 463
Tru1I TTAA 2 cut(s) 90, 462
Tru9I TTAA 2 cut(s) 90, 462
TscAI CASTG 2 cut(s) 42, 261
TseFI GTSAC 2 cut(s) 328, 381
TseI GCWGC 2 cut(s) 74, 220
Tsp45I GTSAC 2 cut(s) 328, 381
TspDTI ATGAA 4 cut(s) 77, 330, 407, 464
TspRI CASTG 2 cut(s) 42, 261
Vha464I CTTAAG 1 cut(s) 89
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 137
Zsp2I ATGCAT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.