pycom10g06600

Belongs to the globin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
7703074 .. 7703967
894 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g06600.2

Sequence Viewer

Length: 474 bp
ATGGAAGGCAAAGTTTTCACAGAAGAGCAGGAAACACTGGTGGTGAAGTCATGGGGTGTGATGAAGCAGAATGCTGCTGAATTGGGCCTTAAATTTTTCTTGAAGATTTTTGAAATTGCACCATCAGCTCAGAAGCTGTTCTCTTTCTTGAAGGACTCTGATATTCCTCTTGAGAAGAACCCAAAGCTCAAGTCTCATGCCATGTCTGTCTTTGTTATGACTTGTGAATCAGCCGTTCAACTGAGGAAAGCAGGCAAAGTTACAGTAAGAGAGTCAACCTTGAAAAGATTAGGTGGTGTCCACTTCAAATCTGGAGTGGTAGATGAACATTATGAGGTGGTCAAGTTCGCATTGTTGGAAACAATAAAGGAGGCAGTGCCAGAAATGTGGTCAGCAGAGAGGAAGAATGCATGGGAAGAAGCTTACGATCAGTTGGTTGCTGCTATAAAATCAGAAATGAAGCCCTCCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

158

Amino Acids

17.73

Weight (kDa)

7.8

Isoelectric Point (pI)

28.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014520)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16060
fragaria_vesca FvH4_2g07770
malus_domestica MD00G1018700.v1.1 MD00G1018800.v1.1 MD10G1083900.v1.1
prunus_persica Prupe.8G107300_v2.0.a1
pyrus_communis pycom05g06280 pycom10g06600
rosa_chinensis RchiOBHm_Chr6g0262171
rosa_laevigata RLG00000014451
rosa_multiflora Rmu_sc0002510.1_g000017
rosa_roxburghii Rroxscaffold_7G00207870
rosa_rugosa Rorug05G0595200
rosa_samantha Rh6AG115200 Rh6BG109300 Rh6DG097300
rosa_wichuraiana Rw6G010030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 92
AgsI TTSAA 6 cut(s) 103, 113, 151, 239, 283, 307
AluBI AGCT 4 cut(s) 128, 136, 187, 422
AluI AGCT 4 cut(s) 128, 136, 187, 422
Alw26I GTCTC 1 cut(s) 198
AlwNI CAGNNNCTG 1 cut(s) 136
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 2 cut(s) 74, 440
ApoI RAATTY 1 cut(s) 92
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
Asp700I GAANNNNTTC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 55
BbvI GCAGC 2 cut(s) 61, 427
BccI CCATC 1 cut(s) 130
BceAI ACGGC 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 198
BisI GCNGC 2 cut(s) 75, 441
BlsI GCNGC 2 cut(s) 76, 442
BmgT120I GGNCC 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 333
BpuEI CTTGAG 2 cut(s) 173, 191
Bse1I ACTGG 1 cut(s) 42
BseMII CTCAG 2 cut(s) 143, 233
BseNI ACTGG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 61, 427
BshFI GGCC 1 cut(s) 87
BsmAI GTCTC 1 cut(s) 198
BsmI GAATGC 2 cut(s) 76, 412
BsnI GGCC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 427
BspANI GGCC 1 cut(s) 87
BspCNI CTCAG 2 cut(s) 142, 234
BspQI GCTCTTC 1 cut(s) 18
BsrI ACTGG 1 cut(s) 42
BssMI GATC 1 cut(s) 427
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 2 cut(s) 129, 242
BstKTI GATC 1 cut(s) 430
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 1 cut(s) 427
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstV1I GCAGC 2 cut(s) 61, 427
BstXI CCANNNNNNTGG 1 cut(s) 387
BsuRI GGCC 1 cut(s) 87
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 2 cut(s) 35, 381
Cac8I GCNNGC 1 cut(s) 253
CaiI CAGNNNCTG 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 85
CviAII CATG 4 cut(s) 51, 197, 202, 411
CviJI RGCY 7 cut(s) 87, 128, 136, 187, 233, 422, 463
CviKI_1 RGCY 7 cut(s) 87, 128, 136, 187, 233, 422, 463
DdeI CTNAG 2 cut(s) 129, 242
DpnI GATC 1 cut(s) 429
DpnII GATC 1 cut(s) 427
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
EcoT22I ATGCAT 1 cut(s) 412
FaeI CATG 4 cut(s) 54, 200, 205, 414
FaiI YATR 7 cut(s) 52, 198, 203, 218, 333, 412, 446
FatI CATG 4 cut(s) 50, 196, 201, 410
Fnu4HI GCNGC 2 cut(s) 75, 441
Fsp4HI GCNGC 2 cut(s) 75, 441
GluI GCNGC 2 cut(s) 75, 441
GsuI CTGGAG 1 cut(s) 333
HaeIII GGCC 1 cut(s) 87
Hin1II CATG 4 cut(s) 54, 200, 205, 414
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HindIII AAGCTT 1 cut(s) 420
HinfI GANTC 3 cut(s) 155, 227, 272
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 2 cut(s) 276, 301
Hpy188I TCNGA 3 cut(s) 132, 160, 454
Hpy188III TCNNGA 4 cut(s) 100, 148, 170, 312
Hpy8I GTNNAC 2 cut(s) 276, 301
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 2 cut(s) 119, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 2 cut(s) 129, 242
Hsp92II CATG 4 cut(s) 54, 200, 205, 414
Kzo9I GATC 1 cut(s) 427
LguI GCTCTTC 1 cut(s) 18
LpnPI CCDG 5 cut(s) 14, 23, 237, 297, 393
Lsp1109I GCAGC 2 cut(s) 61, 427
MaeIII GTNAC 1 cut(s) 259
MalI GATC 1 cut(s) 429
MboI GATC 1 cut(s) 427
MboII GAAGA 5 cut(s) 35, 115, 187, 415, 428
MluCI AATT 3 cut(s) 80, 92, 114
MlyI GAGTC 2 cut(s) 149, 281
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 5 cut(s) 177, 237, 328, 364, 393
Mph1103I ATGCAT 1 cut(s) 412
MroXI GAANNNNTTC 1 cut(s) 137
MseI TTAA 2 cut(s) 90, 472
Mva1269I GAATGC 2 cut(s) 76, 412
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 1 cut(s) 427
NlaIII CATG 4 cut(s) 54, 200, 205, 414
NsiI ATGCAT 1 cut(s) 412
PciSI GCTCTTC 1 cut(s) 18
PctI GAATGC 2 cut(s) 76, 412
PdmI GAANNNNTTC 1 cut(s) 137
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 2 cut(s) 76, 442
PleI GAGTC 2 cut(s) 149, 280
PpsI GAGTC 2 cut(s) 149, 280
PspPI GGNCC 1 cut(s) 85
PstNI CAGNNNCTG 1 cut(s) 136
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 2 cut(s) 90, 472
SatI GCNGC 2 cut(s) 75, 441
Sau3AI GATC 1 cut(s) 427
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 2 cut(s) 149, 281
SetI ASST 7 cut(s) 130, 138, 189, 281, 295, 339, 424
SmlI CTYRAG 2 cut(s) 170, 188
SmoI CTYRAG 2 cut(s) 170, 188
Sse9I AATT 3 cut(s) 80, 92, 114
TaaI ACNGT 1 cut(s) 265
TasI AATT 3 cut(s) 80, 92, 114
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 2 cut(s) 90, 472
Tru9I TTAA 2 cut(s) 90, 472
TscAI CASTG 2 cut(s) 42, 381
TseI GCWGC 2 cut(s) 74, 440
TspDTI ATGAA 3 cut(s) 77, 339, 473
TspRI CASTG 2 cut(s) 42, 381
XapI RAATTY 1 cut(s) 92
XcmI CCANNNNNNNNNTGG 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 137
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.