AT2G16880

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011910
Physical Location & Seq
Reverse (-)
7312051 .. 7314576
2526 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G16880.1

Sequence Viewer

Length: 2232 bp
ATGGCGACTTTAAAGCCACCCGAATCTCAATTACTAAAAACCCTAACATCAATCCTCACATCAGAGAAAACCCATTTCCTCGAAACCCTAAATCCCTACATTCCTCAAATCACACAGCCTCTCCTTACCTCTCTCCTCTCTTCTCCTTCACTCGCTAAGAAACCAGAAACCCTAGTATCTTTCTTCCAATGGGCTCAAACTTCAATCCCCGAAGCATTTCCATCGGATTCACCTCTTCCACTTATCTCCGTCGTCCGTTCTCTTCTCTCTCACCACAAATTCGCCGACGCCAAGTCTCTTCTCGTCTCCTATATCCGCACCTCCGATGCATCTCTCTCTCTTTGCAACTCTCTCCTTCACCCGAATCTTCATCTATCACCTCCACCTTCTAAAGCTCTATTCGACATTGCTCTTAGTGCTTATCTTCATGAGGGAAAGCCTCACGTTGCGTTACAGATCTTCCAGAAGATGATTCGATTAAAGCTTAAGCCAAATCTGCTCACTTGCAATACTCTTCTCATTGGTTTAGTCAGGTACCCTTCTAGCTTCTCTATCTCAAGTGCTAGAGAAGTGTTTGATGATATGGTTAAGATTGGTGTTTCGCTAAATGTGCAAACTTTCAATGTTTTGGTTAATGGGTATTGCTTGGAAGGTAAGCTTGAGGATGCTTTAGGAATGTTAGAGAGGATGGTTAGTGAATTCAAGGTTAATCCTGATAATGTTACTTACAATACGATTTTGAAAGCAATGTCTAAGAAAGGTCGTTTGAGTGATCTTAAGGAATTGTTGTTGGATATGAAGAAGAATGGATTGGTGCCAAATAGGGTTACTTATAATAATTTAGTGTATGGTTACTGTAAGTTAGGTTCGTTGAAAGAAGCATTTCAGATTGTGGAGCTGATGAAGCAAACTAATGTATTACCGGATCTTTGTACCTATAACATTTTGATCAATGGGCTTTGCAATGCGGGGAGTATGAGGGAAGGTCTTGAATTAATGGATGCGATGAAGAGTTTGAAGTTACAGCCCGATGTGGTTACTTACAATACATTGATTGATGGGTGTTTCGAATTGGGGCTTAGTTTGGAGGCTAGGAAGTTGATGGAGCAAATGGAAAATGATGGAGTCAAAGCTAACCAAGTGACTCATAATATCTCTCTTAAGTGGCTTTGTAAGGAAGAGAAAAGGGAAGCGGTTACTAGAAAGGTTAAGGAATTGGTGGACATGCACGGGTTTTCTCCTGATATAGTAACTTATCATACTCTGATTAAAGCGTATTTGAAAGTAGGAGATTTGAGTGGTGCCCTTGAGATGATGCGTGAGATGGGGCAAAAAGGGATTAAGATGAATACTATTACCCTTAATACCATTCTTGATGCTCTATGTAAGGAGAGGAAACTTGATGAGGCTCACAATTTGCTGAATAGTGCGCACAAACGAGGATTTATTGTTGACGAGGTTACTTATGGCACATTAATCATGGGATTCTTCAGGGAAGAAAAAGTGGAGAAAGCTTTGGAGATGTGGGATGAGATGAAGAAGGTAAAGATTACTCCTACAGTGAGCACGTTCAACTCTTTAATTGGAGGTCTCTGTCACCATGGAAAAACTGAGCTAGCAATGGAGAAATTCGATGAGCTTGCTGAGAGTGGTTTGCTTCCTGATGACAGTACTTTCAATTCAATCATCCTCGGATACTGCAAAGAAGGACGAGTTGAGAAAGCATTCGAGTTTTATAATGAATCCATCAAACACTCTTTCAAGCCTGATAACTATACATGCAACATTCTCCTCAATGGTCTTTGTAAGGAAGGTATGACAGAAAAGGCTCTCAATTTCTTCAACACGCTAATAGAGGAGAGAGAGGTTGATACAGTTACATACAACACGATGATCTCGGCTTTCTGCAAGGACAAGAAGTTAAAAGAAGCATATGACCTTCTATCAGAAATGGAGGAGAAAGGACTAGAGCCTGATCGGTTTACATACAACAGTTTTATCAGTTTGCTTATGGAAGATGGTAAGCTGAGTGAAACAGATGAATTGTTAAAGAAATTTTCCGGAAAGTTTGGATCGATGAAGCGGGATTTACAGGTAGAGACAGAGAAAAATCCAGCAACAAGTGAATCAAAGGAGGAACTTAACACTGAAGCTATTGCTTATTCAGATGTAATAGATGAACTTTGTAGTAGAGGAAGATTAAAGGAGCATTCTAGATCTTACACTAGTTGA

Protein Analysis

743

Amino Acids

83.77

Weight (kDa)

6.06

Isoelectric Point (pI)

26.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 134 - 177 2e-06 PPR repeat family
PPR_2 PF13041 186 - 215 7.2e-06 PPR repeat family
PPR_3 PF13812 191 - 251 2e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 199 - 231 1.8e-09 PPR repeat
PPR_2 PF13041 203 - 243 8.5e-07 PPR repeat family
PPR PF01535 206 - 232 3.9e-06 PPR repeat
PPR_3 PF13812 236 - 281 4.4e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 238 - 287 5.1e-14 PPR repeat family
PPR_long PF17177 262 - 359 1.1e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 262 - 318 1.2e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 269 - 302 2.8e-10 PPR repeat
PPR_2 PF13041 273 - 322 2.2e-16 PPR repeat family
PPR PF01535 276 - 303 5.3e-06 PPR repeat
PPR_1 PF12854 305 - 337 7e-10 PPR repeat
PPR_2 PF13041 308 - 356 2.1e-16 PPR repeat family
PPR PF01535 312 - 339 3.2e-06 PPR repeat
PPR_3 PF13812 332 - 388 7.5e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 341 - 372 3.1e-08 PPR repeat
PPR_2 PF13041 343 - 392 1.4e-13 PPR repeat family
PPR PF01535 346 - 376 2.1e-06 PPR repeat
PPR_long PF17177 364 - 501 7.6e-06 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 403 - 511 2.4e-10 Fungal tetratrico peptide repeats
PPR_3 PF13812 403 - 461 7.1e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 411 - 442 2e-06 PPR repeat
PPR_2 PF13041 414 - 463 3.1e-14 PPR repeat family
PPR PF01535 417 - 447 3.8e-06 PPR repeat
PPR_1 PF12854 445 - 475 2.5e-07 PPR repeat
PPR_2 PF13041 450 - 497 4.4e-11 PPR repeat family
PPR_3 PF13812 473 - 529 3.7e-11 Pentatricopeptide repeat domain
TPR_24 PF23276 479 - 580 4.9e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 481 - 513 1.6e-08 PPR repeat
PPR_2 PF13041 485 - 533 3.2e-15 PPR repeat family
PPR PF01535 487 - 514 1.1e-06 PPR repeat
PPR_long PF17177 501 - 620 7.5e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 517 - 546 1.1e-06 PPR repeat
PPR_2 PF13041 519 - 563 7.2e-10 PPR repeat family
PPR_1 PF12854 551 - 581 7.1e-10 PPR repeat
PPR_2 PF13041 554 - 603 5.6e-17 PPR repeat family
PPR PF01535 557 - 584 2.8e-06 PPR repeat
PPR_1 PF12854 587 - 615 1.3e-06 PPR repeat
TPR_24 PF23276 594 - 676 3.2e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 622 - 669 2.3e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 623 - 652 2.5e-11 PPR repeat
PPR_2 PF13041 624 - 669 1.1e-17 PPR repeat family
PPR PF01535 626 - 656 4.2e-10 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011910)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16880
fragaria_vesca FvH4_7g20132
malus_domestica MD01G1131000.v1.1 MD07G1179000.v1.1
prunus_persica Prupe.2G218100_v2.0.a1 Prupe.2G218100_v2.0.a1
pyrus_communis pycom01g13980 pycom07g17270
rosa_chinensis RchiOBHm_Chr1g0364091
rosa_laevigata RLG00000027517
rosa_multiflora Rmu_sc0000071.1_g000021 Rmu_sc0011704.1_g000001
rosa_roxburghii Rroxscaffold_4G00292650
rosa_rugosa Rorug01G0313500
rosa_samantha Rh1AG320900 Rh1BG284100 Rh1CG300500 Rh1DG315500
rosa_wichuraiana Rw1G028450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 834, 1737
Acc16I TGCGCA 1 cut(s) 1431
Acc65I GGTACC 1 cut(s) 534
AccB1I GGYRCC 3 cut(s) 534, 814, 1301
AccIII TCCGGA 1 cut(s) 2060
AciI CCGC 4 cut(s) 316, 968, 1193, 2083
AclWI GGATC 2 cut(s) 933, 2080
AcsI RAATTY 4 cut(s) 278, 698, 1628, 2054
AcuI CTGAAG 2 cut(s) 1474, 2169
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 3 cut(s) 536, 934, 1672
AflII CTTAAG 3 cut(s) 485, 776, 1160
AhdI GACNNNNNGTC 1 cut(s) 292
AhlI ACTAGT 1 cut(s) 2225
AjuI GAANNNNNNNTTGG 2 cut(s) 794, 826
Alw21I GWGCWC 1 cut(s) 1568
Alw26I GTCTC 4 cut(s) 300, 310, 1595, 2093
AlwI GGATC 2 cut(s) 933, 2080
Aor13HI TCCGGA 1 cut(s) 2060
ApoI RAATTY 4 cut(s) 278, 698, 1628, 2054
AseI ATTAAT 2 cut(s) 995, 1475
Asp700I GAANNNNTTC 3 cut(s) 216, 882, 1724
Asp718I GGTACC 1 cut(s) 534
AspLEI GCGC 1 cut(s) 1432
AsuHPI GGTGA 5 cut(s) 222, 263, 350, 369, 1589
AsuII TTCGAA 1 cut(s) 1068
AsuNHI GCTAGC 1 cut(s) 1615
BaeGI GKGCMC 1 cut(s) 1306
BaeI ACNNNNGTAYC 2 cut(s) 159, 192
BanI GGYRCC 3 cut(s) 534, 814, 1301
BanII GRGCYC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 1568
BccI CCATC 8 cut(s) 229, 682, 1052, 1096, 1115, 1318, 1754, 2012
BcgI CGANNNNNNTGC 4 cut(s) 204, 238, 1622, 1656
BciVI GTATCC 1 cut(s) 1688
BclI TGATCA 1 cut(s) 948
BcoDI GTCTC 4 cut(s) 300, 310, 1595, 2093
BcuI ACTAGT 1 cut(s) 2225
BfaI CTAG 9 cut(s) 173, 543, 564, 1092, 1200, 1616, 1967, 2214, 2226
BfmI CTRYAG 1 cut(s) 1557
BfrI CTTAAG 3 cut(s) 485, 776, 1160
BfuI GTATCC 1 cut(s) 1688
BglII AGATCT 2 cut(s) 456, 2216
BmcAI AGTACT 1 cut(s) 1672
BmeRI GACNNNNNGTC 1 cut(s) 292
BmiI GGNNCC 3 cut(s) 536, 816, 1303
BmsI GCATC 6 cut(s) 316, 338, 655, 991, 1305, 1366
BmtI GCTAGC 1 cut(s) 1619
Bpu14I TTCGAA 1 cut(s) 1068
BpuEI CTTGAG 3 cut(s) 541, 680, 1328
Bsa29I ATCGAT 1 cut(s) 2075
BsaHI GRCGYC 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 1595
BsaJI CCNNGG 2 cut(s) 1600, 1690
BsaWI WCCGGW 2 cut(s) 922, 2060
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bse3DI GCAATG 4 cut(s) 405, 753, 970, 1626
BseAI TCCGGA 1 cut(s) 2060
BseCI ATCGAT 1 cut(s) 2075
BseDI CCNNGG 2 cut(s) 1600, 1690
BseGI GGATG 5 cut(s) 670, 693, 1006, 1534, 1686
BseMI GCAATG 4 cut(s) 405, 753, 970, 1626
BseMII CTCAG 3 cut(s) 1602, 1635, 2018
BseRI GAGGAG 4 cut(s) 125, 1781, 1871, 1970
BseSI GKGCMC 1 cut(s) 1306
BshNI GGYRCC 3 cut(s) 534, 814, 1301
BshVI ATCGAT 1 cut(s) 2075
BsiHKAI GWGCWC 1 cut(s) 1568
BsiSI CCGG 2 cut(s) 923, 2061
BsmAI GTCTC 4 cut(s) 300, 310, 1595, 2093
BsmBI CGTCTC 1 cut(s) 310
BsmI GAATGC 2 cut(s) 1724, 2209
Bso31I GGTCTC 1 cut(s) 1595
Bsp119I TTCGAA 1 cut(s) 1068
Bsp1286I GDGCHC 3 cut(s) 196, 1306, 1568
Bsp13I TCCGGA 1 cut(s) 2060
Bsp143I GATC 8 cut(s) 456, 772, 925, 948, 1893, 1975, 2072, 2216
Bsp19I CCATGG 1 cut(s) 1600
BspACI CCGC 4 cut(s) 316, 968, 1193, 2083
BspCNI CTCAG 3 cut(s) 1603, 1636, 2019
BspDI ATCGAT 1 cut(s) 2075
BspEI TCCGGA 1 cut(s) 2060
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 3 cut(s) 536, 816, 1303
BspOI GCTAGC 1 cut(s) 1619
BspPI GGATC 2 cut(s) 933, 2080
BspT104I TTCGAA 1 cut(s) 1068
BspT107I GGYRCC 3 cut(s) 534, 814, 1301
BspTI CTTAAG 3 cut(s) 485, 776, 1160
BspTNI GGTCTC 1 cut(s) 1595
BsrDI GCAATG 4 cut(s) 405, 753, 970, 1626
BssECI CCNNGG 2 cut(s) 1600, 1690
BssMI GATC 8 cut(s) 456, 772, 925, 948, 1893, 1975, 2072, 2216
BssNI GRCGYC 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 1600
Bst4CI ACNGT 5 cut(s) 857, 1561, 1670, 1876, 1994
Bst6I CTCTTC 7 cut(s) 145, 240, 267, 303, 519, 1004, 1173
BstACI GRCGYC 1 cut(s) 288
BstAFI CTTAAG 3 cut(s) 485, 776, 1160
BstBI TTCGAA 1 cut(s) 1068
BstC8I GCNNGC 2 cut(s) 1617, 1641
BstDEI CTNAG 7 cut(s) 156, 413, 753, 1079, 1611, 1644, 2027
BstDSI CCRYGG 1 cut(s) 1600
BstF5I GGATG 5 cut(s) 670, 693, 1006, 1534, 1686
BstHHI GCGC 1 cut(s) 1432
BstKTI GATC 8 cut(s) 459, 775, 928, 951, 1896, 1978, 2075, 2219
BstMAI GTCTC 4 cut(s) 300, 310, 1595, 2093
BstMBI GATC 8 cut(s) 456, 772, 925, 948, 1893, 1975, 2072, 2216
BstMWI GCNNNNNNNGC 4 cut(s) 416, 496, 610, 904
BstNSI RCATGY 2 cut(s) 1228, 1782
BstSFI CTRYAG 1 cut(s) 1557
BstSLI GKGCMC 1 cut(s) 1306
BstX2I RGATCY 3 cut(s) 456, 925, 2216
BstYI RGATCY 3 cut(s) 456, 925, 2216
Bsu15I ATCGAT 1 cut(s) 2075
BsuI GTATCC 1 cut(s) 1688
BsuTUI ATCGAT 1 cut(s) 2075
BtgI CCRYGG 1 cut(s) 1600
BtgZI GCGATG 1 cut(s) 1019
BtsCI GGATG 5 cut(s) 670, 693, 1006, 1534, 1686
BtsIMutI CAGTG 2 cut(s) 1566, 2145
Cac8I GCNNGC 2 cut(s) 1617, 1641
CciI TCATGA 1 cut(s) 427
CfoI GCGC 1 cut(s) 1432
ClaI ATCGAT 1 cut(s) 2075
CseI GACGC 1 cut(s) 296
Csp6I GTAC 3 cut(s) 535, 933, 1671
CviAII CATG 5 cut(s) 428, 1225, 1480, 1601, 1779
CviQI GTAC 3 cut(s) 535, 933, 1671
DdeI CTNAG 7 cut(s) 156, 413, 753, 1079, 1611, 1644, 2027
DpnI GATC 8 cut(s) 458, 774, 927, 950, 1895, 1977, 2074, 2218
DpnII GATC 8 cut(s) 456, 772, 925, 948, 1893, 1975, 2072, 2216
DraI TTTAAA 1 cut(s) 12
DriI GACNNNNNGTC 1 cut(s) 292
Eam1104I CTCTTC 7 cut(s) 145, 240, 267, 303, 519, 1004, 1173
Eam1105I GACNNNNNGTC 1 cut(s) 292
EarI CTCTTC 7 cut(s) 145, 240, 267, 303, 519, 1004, 1173
Eco130I CCWWGG 1 cut(s) 1600
Eco24I GRGCYC 1 cut(s) 196
Eco31I GGTCTC 1 cut(s) 1595
Eco57I CTGAAG 2 cut(s) 1474, 2169
EcoRI GAATTC 1 cut(s) 698
EcoT14I CCWWGG 1 cut(s) 1600
EcoT22I ATGCAT 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 1600
Esp3I CGTCTC 1 cut(s) 310
FaeI CATG 5 cut(s) 431, 1228, 1483, 1604, 1782
FalI AAGNNNNNCTT 2 cut(s) 642, 674
FatI CATG 5 cut(s) 427, 1224, 1479, 1600, 1778
FauI CCCGC 2 cut(s) 961, 2076
FauNDI CATATG 1 cut(s) 1933
FbaI TGATCA 1 cut(s) 948
FokI GGATG 5 cut(s) 677, 700, 1013, 1541, 1673
FriOI GRGCYC 1 cut(s) 196
FspAI RTGCGCAY 1 cut(s) 1431
FspBI CTAG 9 cut(s) 173, 543, 564, 1092, 1200, 1616, 1967, 2214, 2226
FspI TGCGCA 1 cut(s) 1431
GlaI GCGC 1 cut(s) 1431
HapII CCGG 2 cut(s) 923, 2061
HgaI GACGC 1 cut(s) 296
HhaI GCGC 1 cut(s) 1432
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 5 cut(s) 431, 1228, 1483, 1604, 1782
Hin6I GCGC 1 cut(s) 1430
HinP1I GCGC 1 cut(s) 1430
HincII GTYRAC 1 cut(s) 1453
HindII GTYRAC 1 cut(s) 1453
HindIII AAGCTT 3 cut(s) 482, 656, 1512
HinfI GANTC 9 cut(s) 23, 227, 364, 472, 1125, 1144, 1485, 1742, 2126
HpaII CCGG 2 cut(s) 923, 2061
HphI GGTGA 5 cut(s) 222, 263, 350, 369, 1589
Hpy166II GTNNAC 3 cut(s) 1222, 1453, 1983
Hpy188I TCNGA 8 cut(s) 64, 226, 325, 888, 1266, 1694, 1948, 2167
Hpy188III TCNNGA 9 cut(s) 428, 463, 713, 989, 1241, 1373, 1661, 2061, 2214
Hpy8I GTNNAC 3 cut(s) 1222, 1453, 1983
Hpy99I CGWCG 2 cut(s) 254, 290
HpyCH4III ACNGT 5 cut(s) 857, 1561, 1670, 1876, 1994
HpyCH4IV ACGT 2 cut(s) 444, 1568
HpyCH4V TGCA 9 cut(s) 329, 345, 507, 613, 963, 1228, 1701, 1782, 1908
HpyF10VI GCNNNNNNNGC 4 cut(s) 416, 496, 610, 904
HpyF3I CTNAG 7 cut(s) 156, 413, 753, 1079, 1611, 1644, 2027
HpySE526I ACGT 2 cut(s) 444, 1568
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 5 cut(s) 431, 1228, 1483, 1604, 1782
HspAI GCGC 1 cut(s) 1430
Kpn2I TCCGGA 1 cut(s) 2060
KpnI GGTACC 1 cut(s) 538
Ksp22I TGATCA 1 cut(s) 948
Kzo9I GATC 8 cut(s) 456, 772, 925, 948, 1893, 1975, 2072, 2216
LmnI GCTCC 3 cut(s) 895, 1105, 2206
LweI GCATC 6 cut(s) 316, 338, 655, 991, 1305, 1366
MaeI CTAG 9 cut(s) 173, 543, 564, 1092, 1200, 1616, 1967, 2214, 2226
MaeII ACGT 2 cut(s) 444, 1568
MalI GATC 8 cut(s) 458, 774, 927, 950, 1895, 1977, 2074, 2218
MboI GATC 8 cut(s) 456, 772, 925, 948, 1893, 1975, 2072, 2216
MflI RGATCY 3 cut(s) 456, 925, 2216
MhlI GDGCHC 3 cut(s) 196, 1306, 1568
MlyI GAGTC 2 cut(s) 1134, 1138
MmeI TCCRAC 1 cut(s) 771
Mph1103I ATGCAT 1 cut(s) 331
MroI TCCGGA 1 cut(s) 2060
MroXI GAANNNNTTC 3 cut(s) 216, 882, 1724
MspCI CTTAAG 3 cut(s) 485, 776, 1160
MspI CCGG 2 cut(s) 923, 2061
Mva1269I GAATGC 2 cut(s) 1724, 2209
MwoI GCNNNNNNNGC 4 cut(s) 416, 496, 610, 904
NcoI CCATGG 1 cut(s) 1600
NdeI CATATG 1 cut(s) 1933
NdeII GATC 8 cut(s) 456, 772, 925, 948, 1893, 1975, 2072, 2216
NheI GCTAGC 1 cut(s) 1615
NlaIII CATG 5 cut(s) 431, 1228, 1483, 1604, 1782
NlaIV GGNNCC 3 cut(s) 536, 816, 1303
NmeAIII GCCGAG 1 cut(s) 1877
NmuCI GTSAC 2 cut(s) 1141, 1595
NsbI TGCGCA 1 cut(s) 1431
NsiI ATGCAT 1 cut(s) 331
NspI RCATGY 2 cut(s) 1228, 1782
NspV TTCGAA 1 cut(s) 1068
PagI TCATGA 1 cut(s) 427
PctI GAATGC 2 cut(s) 1724, 2209
PdmI GAANNNNTTC 3 cut(s) 216, 882, 1724
PfeI GAWTC 7 cut(s) 23, 227, 364, 472, 1485, 1742, 2126
PleI GAGTC 2 cut(s) 1133, 1138
PpsI GAGTC 2 cut(s) 1133, 1138
PshBI ATTAAT 2 cut(s) 995, 1475
PsiI TTATAA 2 cut(s) 834, 1737
PspN4I GGNNCC 3 cut(s) 536, 816, 1303
PsrI GAACNNNNNNTAC 2 cut(s) 850, 882
PsuI RGATCY 3 cut(s) 456, 925, 2216
RsaI GTAC 3 cut(s) 536, 934, 1672
RsaNI GTAC 3 cut(s) 535, 933, 1671
Sau3AI GATC 8 cut(s) 456, 772, 925, 948, 1893, 1975, 2072, 2216
ScaI AGTACT 1 cut(s) 1672
SchI GAGTC 2 cut(s) 1134, 1138
SduI GDGCHC 3 cut(s) 196, 1306, 1568
SfaNI GCATC 6 cut(s) 316, 338, 655, 991, 1305, 1366
SfcI CTRYAG 1 cut(s) 1557
SfuI TTCGAA 1 cut(s) 1068
SmlI CTYRAG 6 cut(s) 485, 556, 659, 776, 1160, 1307
SmoI CTYRAG 6 cut(s) 485, 556, 659, 776, 1160, 1307
SpeI ACTAGT 1 cut(s) 2225
SsiI CCGC 4 cut(s) 316, 968, 1193, 2083
SspMI CTAG 9 cut(s) 173, 543, 564, 1092, 1200, 1616, 1967, 2214, 2226
StyI CCWWGG 1 cut(s) 1600
TaaI ACNGT 5 cut(s) 857, 1561, 1670, 1876, 1994
TaiI ACGT 2 cut(s) 447, 1571
TaqI TCGA 7 cut(s) 81, 402, 475, 1068, 1632, 1728, 2075
TatI WGTACW 1 cut(s) 1670
TfiI GAWTC 7 cut(s) 23, 227, 364, 472, 1485, 1742, 2126
TscAI CASTG 2 cut(s) 1566, 2152
TseFI GTSAC 2 cut(s) 1141, 1595
Tsp45I GTSAC 2 cut(s) 1141, 1595
TspGWI ACGGA 2 cut(s) 238, 245
TspRI CASTG 2 cut(s) 1566, 2152
Vha464I CTTAAG 3 cut(s) 485, 776, 1160
VspI ATTAAT 2 cut(s) 995, 1475
XapI RAATTY 4 cut(s) 278, 698, 1628, 2054
XbaI TCTAGA 1 cut(s) 2213
XceI RCATGY 2 cut(s) 1228, 1782
XmnI GAANNNNTTC 3 cut(s) 216, 882, 1724
XspI CTAG 9 cut(s) 173, 543, 564, 1092, 1200, 1616, 1967, 2214, 2226
ZrmI AGTACT 1 cut(s) 1672
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.