Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G16880 |
| fragaria_vesca | FvH4_7g20132 |
| malus_domestica | MD01G1131000.v1.1 MD07G1179000.v1.1 |
| prunus_persica | Prupe.2G218100_v2.0.a1 Prupe.2G218100_v2.0.a1 |
| pyrus_communis | pycom01g13980 pycom07g17270 |
| rosa_chinensis | RchiOBHm_Chr1g0364091 |
| rosa_laevigata | RLG00000027517 |
| rosa_multiflora | Rmu_sc0000071.1_g000021 Rmu_sc0011704.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00292650 |
| rosa_rugosa | Rorug01G0313500 |
| rosa_samantha | Rh1AG320900 Rh1BG284100 Rh1CG300500 Rh1DG315500 |
| rosa_wichuraiana | Rw1G028450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 506 |
| Acc36I | ACCTGC | 2 cut(s) | 506, 1525 |
| AccB1I | GGYRCC | 1 cut(s) | 1982 |
| AccBSI | CCGCTC | 1 cut(s) | 147 |
| AccII | CGCG | 1 cut(s) | 1394 |
| AciI | CCGC | 9 cut(s) | 66, 69, 145, 318, 469, 1394, 1426, 1493, 2027 |
| AcsI | RAATTY | 3 cut(s) | 2083, 2123, 2257 |
| AcuI | CTGAAG | 1 cut(s) | 971 |
| AcyI | GRCGYC | 2 cut(s) | 288, 472 |
| AfaI | GTAC | 3 cut(s) | 281, 2186, 2292 |
| AflII | CTTAAG | 1 cut(s) | 1820 |
| AflIII | ACRYGT | 2 cut(s) | 819, 1766 |
| AjnI | CCWGG | 1 cut(s) | 201 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1057, 1089 |
| AluBI | AGCT | 9 cut(s) | 20, 337, 451, 717, 1387, 1510, 1627, 1825, 2144 |
| AluI | AGCT | 9 cut(s) | 20, 337, 451, 717, 1387, 1510, 1627, 1825, 2144 |
| Alw21I | GWGCWC | 2 cut(s) | 339, 1999 |
| Alw44I | GTGCAC | 1 cut(s) | 1995 |
| AoxI | GGCC | 3 cut(s) | 198, 204, 701 |
| ApaI | GGGCCC | 1 cut(s) | 202 |
| ApaLI | GTGCAC | 1 cut(s) | 1995 |
| ApeKI | GCWGC | 3 cut(s) | 121, 443, 1689 |
| ApoI | RAATTY | 3 cut(s) | 2083, 2123, 2257 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1382, 1414 |
| AseI | ATTAAT | 1 cut(s) | 1257 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1745, 2034 |
| AspLEI | GCGC | 1 cut(s) | 176 |
| AspS9I | GGNCC | 3 cut(s) | 198, 199, 205 |
| AsuC2I | CCSGG | 1 cut(s) | 1649 |
| AsuHPI | GGTGA | 5 cut(s) | 227, 307, 487, 1231, 1546 |
| BaeGI | GKGCMC | 2 cut(s) | 202, 1999 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 390, 423 |
| BanI | GGYRCC | 1 cut(s) | 1982 |
| BanII | GRGCYC | 2 cut(s) | 202, 339 |
| BbsI | GAAGAC | 1 cut(s) | 1337 |
| Bbv12I | GWGCWC | 2 cut(s) | 339, 1999 |
| BbvI | GCAGC | 3 cut(s) | 133, 455, 1676 |
| BccI | CCATC | 9 cut(s) | 146, 587, 991, 1043, 1171, 1201, 1211, 1297, 1306 |
| BciT130I | CCWGG | 1 cut(s) | 203 |
| BciVI | GTATCC | 1 cut(s) | 391 |
| BclI | TGATCA | 3 cut(s) | 1464, 1600, 2071 |
| BcnI | CCSGG | 1 cut(s) | 1649 |
| BfaI | CTAG | 3 cut(s) | 158, 1197, 1643 |
| BfmI | CTRYAG | 1 cut(s) | 663 |
| BfoI | RGCGCY | 1 cut(s) | 177 |
| BfrI | CTTAAG | 1 cut(s) | 1820 |
| BfuAI | ACCTGC | 2 cut(s) | 506, 1525 |
| BfuI | GTATCC | 1 cut(s) | 391 |
| BisI | GCNGC | 6 cut(s) | 69, 122, 444, 470, 1395, 1690 |
| BlsI | GCNGC | 6 cut(s) | 70, 123, 445, 471, 1396, 1691 |
| Bme1390I | CCNGG | 2 cut(s) | 203, 1649 |
| BmgT120I | GGNCC | 3 cut(s) | 198, 199, 205 |
| BmiI | GGNNCC | 2 cut(s) | 200, 1984 |
| BmrFI | CCNGG | 2 cut(s) | 203, 1649 |
| BmsI | GCATC | 9 cut(s) | 565, 649, 1005, 1069, 1092, 1463, 1852, 2182, 2238 |
| BpiI | GAAGAC | 1 cut(s) | 1337 |
| BpuMI | CCSGG | 1 cut(s) | 1649 |
| BsaAI | YACGTR | 2 cut(s) | 822, 1032 |
| BsaHI | GRCGYC | 2 cut(s) | 288, 472 |
| BsaJI | CCNNGG | 1 cut(s) | 201 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 635, 665, 1057, 1087 |
| Bse1I | ACTGG | 3 cut(s) | 740, 1585, 2106 |
| Bse3DI | GCAATG | 2 cut(s) | 879, 2202 |
| BseBI | CCWGG | 1 cut(s) | 203 |
| BseDI | CCNNGG | 1 cut(s) | 201 |
| BseMI | GCAATG | 2 cut(s) | 879, 2202 |
| BseNI | ACTGG | 3 cut(s) | 740, 1585, 2106 |
| BseRI | GAGGAG | 9 cut(s) | 119, 122, 233, 242, 254, 329, 986, 1081, 1112 |
| BseSI | GKGCMC | 2 cut(s) | 202, 1999 |
| BseXI | GCAGC | 3 cut(s) | 133, 455, 1676 |
| BseYI | CCCAGC | 3 cut(s) | 170, 447, 1544 |
| BsgI | GTGCAG | 1 cut(s) | 338 |
| Bsh1236I | CGCG | 1 cut(s) | 1394 |
| Bsh1285I | CGRYCG | 1 cut(s) | 325 |
| BshFI | GGCC | 3 cut(s) | 200, 206, 703 |
| BshNI | GGYRCC | 1 cut(s) | 1982 |
| BsiEI | CGRYCG | 1 cut(s) | 325 |
| BsiHKAI | GWGCWC | 2 cut(s) | 339, 1999 |
| BsiSI | CCGG | 2 cut(s) | 1019, 1649 |
| BslFI | GGGAC | 3 cut(s) | 785, 1014, 1631 |
| BsmFI | GGGAC | 3 cut(s) | 785, 1014, 1631 |
| BsnI | GGCC | 3 cut(s) | 200, 206, 703 |
| Bsp120I | GGGCCC | 1 cut(s) | 198 |
| Bsp1286I | GDGCHC | 3 cut(s) | 202, 339, 1999 |
| Bsp143I | GATC | 6 cut(s) | 322, 1464, 1600, 1927, 2071, 2157 |
| BspACI | CCGC | 9 cut(s) | 66, 69, 145, 318, 469, 1394, 1426, 1493, 2027 |
| BspANI | GGCC | 3 cut(s) | 200, 206, 703 |
| BspFNI | CGCG | 1 cut(s) | 1394 |
| BspLI | GGNNCC | 2 cut(s) | 200, 1984 |
| BspMI | ACCTGC | 2 cut(s) | 506, 1525 |
| BspT107I | GGYRCC | 1 cut(s) | 1982 |
| BspTI | CTTAAG | 1 cut(s) | 1820 |
| BsrBI | CCGCTC | 1 cut(s) | 147 |
| BsrDI | GCAATG | 2 cut(s) | 879, 2202 |
| BsrI | ACTGG | 3 cut(s) | 740, 1585, 2106 |
| BssECI | CCNNGG | 1 cut(s) | 201 |
| BssMI | GATC | 6 cut(s) | 322, 1464, 1600, 1927, 2071, 2157 |
| BssNI | GRCGYC | 2 cut(s) | 288, 472 |
| Bst2UI | CCWGG | 1 cut(s) | 203 |
| Bst4CI | ACNGT | 5 cut(s) | 370, 638, 1357, 1735, 2140 |
| Bst6I | CTCTTC | 2 cut(s) | 1911, 2025 |
| BstACI | GRCGYC | 2 cut(s) | 288, 472 |
| BstAFI | CTTAAG | 1 cut(s) | 1820 |
| BstBAI | YACGTR | 2 cut(s) | 822, 1032 |
| BstC8I | GCNNGC | 1 cut(s) | 531 |
| BstFNI | CGCG | 1 cut(s) | 1394 |
| BstH2I | RGCGCY | 1 cut(s) | 177 |
| BstHHI | GCGC | 1 cut(s) | 176 |
| BstKTI | GATC | 6 cut(s) | 325, 1467, 1603, 1930, 2074, 2160 |
| BstMBI | GATC | 6 cut(s) | 322, 1464, 1600, 1927, 2071, 2157 |
| BstMCI | CGRYCG | 1 cut(s) | 325 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1499, 1689 |
| BstNI | CCWGG | 1 cut(s) | 203 |
| BstNSI | RCATGY | 1 cut(s) | 1770 |
| BstSCI | CCNGG | 2 cut(s) | 201, 1647 |
| BstSFI | CTRYAG | 1 cut(s) | 663 |
| BstSLI | GKGCMC | 2 cut(s) | 202, 1999 |
| BstUI | CGCG | 1 cut(s) | 1394 |
| BstV1I | GCAGC | 3 cut(s) | 133, 455, 1676 |
| BstV2I | GAAGAC | 1 cut(s) | 1337 |
| BsuI | GTATCC | 1 cut(s) | 391 |
| BsuRI | GGCC | 3 cut(s) | 200, 206, 703 |
| BtsIMutI | CAGTG | 1 cut(s) | 2113 |
| BveI | ACCTGC | 2 cut(s) | 506, 1525 |
| Cac8I | GCNNGC | 1 cut(s) | 531 |
| CfoI | GCGC | 1 cut(s) | 176 |
| Cfr13I | GGNCC | 3 cut(s) | 198, 199, 205 |
| CseI | GACGC | 3 cut(s) | 296, 461, 1400 |
| Csp6I | GTAC | 3 cut(s) | 280, 2185, 2291 |
| CviAII | CATG | 6 cut(s) | 787, 1468, 1679, 1767, 1836, 2218 |
| CviQI | GTAC | 3 cut(s) | 280, 2185, 2291 |
| DpnI | GATC | 6 cut(s) | 324, 1466, 1602, 1929, 2073, 2159 |
| DpnII | GATC | 6 cut(s) | 322, 1464, 1600, 1927, 2071, 2157 |
| DraI | TTTAAA | 2 cut(s) | 1297, 2238 |
| Eam1104I | CTCTTC | 2 cut(s) | 1911, 2025 |
| EarI | CTCTTC | 2 cut(s) | 1911, 2025 |
| EciI | GGCGGA | 1 cut(s) | 1508 |
| Ecl136II | GAGCTC | 1 cut(s) | 337 |
| Eco24I | GRGCYC | 2 cut(s) | 202, 339 |
| Eco32I | GATATC | 1 cut(s) | 1887 |
| Eco53kI | GAGCTC | 1 cut(s) | 337 |
| Eco57I | CTGAAG | 1 cut(s) | 971 |
| EcoICRI | GAGCTC | 1 cut(s) | 337 |
| EcoRII | CCWGG | 1 cut(s) | 201 |
| EcoRV | GATATC | 1 cut(s) | 1887 |
| EcoT38I | GRGCYC | 2 cut(s) | 202, 339 |
| FaeI | CATG | 6 cut(s) | 790, 1471, 1682, 1770, 1839, 2221 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 517, 549, 2022, 2054 |
| FaqI | GGGAC | 3 cut(s) | 785, 1014, 1631 |
| FatI | CATG | 6 cut(s) | 786, 1467, 1678, 1766, 1835, 2217 |
| FauI | CCCGC | 1 cut(s) | 1419 |
| FauNDI | CATATG | 1 cut(s) | 1978 |
| FbaI | TGATCA | 3 cut(s) | 1464, 1600, 2071 |
| Fnu4HI | GCNGC | 6 cut(s) | 69, 122, 444, 470, 1395, 1690 |
| FriOI | GRGCYC | 2 cut(s) | 202, 339 |
| Fsp4HI | GCNGC | 6 cut(s) | 69, 122, 444, 470, 1395, 1690 |
| FspBI | CTAG | 3 cut(s) | 158, 1197, 1643 |
| GlaI | GCGC | 1 cut(s) | 175 |
| GluI | GCNGC | 6 cut(s) | 69, 122, 444, 470, 1395, 1690 |
| GsaI | CCCAGC | 3 cut(s) | 174, 451, 1548 |
| HaeII | RGCGCY | 1 cut(s) | 177 |
| HaeIII | GGCC | 3 cut(s) | 200, 206, 703 |
| HapII | CCGG | 2 cut(s) | 1019, 1649 |
| HgaI | GACGC | 3 cut(s) | 296, 461, 1400 |
| HhaI | GCGC | 1 cut(s) | 176 |
| Hin1I | GRCGYC | 2 cut(s) | 288, 472 |
| Hin1II | CATG | 6 cut(s) | 790, 1471, 1682, 1770, 1839, 2221 |
| Hin6I | GCGC | 1 cut(s) | 174 |
| HinP1I | GCGC | 1 cut(s) | 174 |
| HindIII | AAGCTT | 4 cut(s) | 18, 1385, 1508, 1823 |
| HinfI | GANTC | 5 cut(s) | 542, 793, 2054, 2111, 2213 |
| HpaII | CCGG | 2 cut(s) | 1019, 1649 |
| HphI | GGTGA | 5 cut(s) | 227, 307, 487, 1231, 1546 |
| Hpy166II | GTNNAC | 3 cut(s) | 479, 1659, 1997 |
| Hpy188I | TCNGA | 4 cut(s) | 1078, 1464, 1939, 2152 |
| Hpy188III | TCNNGA | 4 cut(s) | 395, 457, 989, 2058 |
| Hpy8I | GTNNAC | 3 cut(s) | 479, 1659, 1997 |
| Hpy99I | CGWCG | 2 cut(s) | 290, 477 |
| HpyAV | CCTTC | 8 cut(s) | 196, 401, 859, 1163, 1194, 1519, 1898, 2171 |
| HpyCH4III | ACNGT | 5 cut(s) | 370, 638, 1357, 1735, 2140 |
| HpyCH4IV | ACGT | 3 cut(s) | 611, 821, 1031 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1499, 1689 |
| HpySE526I | ACGT | 3 cut(s) | 611, 821, 1031 |
| Hsp92I | GRCGYC | 2 cut(s) | 288, 472 |
| Hsp92II | CATG | 6 cut(s) | 790, 1471, 1682, 1770, 1839, 2221 |
| HspAI | GCGC | 1 cut(s) | 174 |
| Ksp22I | TGATCA | 3 cut(s) | 1464, 1600, 2071 |
| Kzo9I | GATC | 6 cut(s) | 322, 1464, 1600, 1927, 2071, 2157 |
| LmnI | GCTCC | 6 cut(s) | 45, 152, 342, 643, 1068, 1231 |
| Lsp1109I | GCAGC | 3 cut(s) | 133, 455, 1676 |
| LweI | GCATC | 9 cut(s) | 565, 649, 1005, 1069, 1092, 1463, 1852, 2182, 2238 |
| MaeI | CTAG | 3 cut(s) | 158, 1197, 1643 |
| MaeII | ACGT | 3 cut(s) | 611, 821, 1031 |
| MaeIII | GTNAC | 7 cut(s) | 1027, 1132, 1237, 1342, 1552, 1867, 2101 |
| MalI | GATC | 6 cut(s) | 324, 1466, 1602, 1929, 2073, 2159 |
| MbiI | CCGCTC | 1 cut(s) | 147 |
| MboI | GATC | 6 cut(s) | 322, 1464, 1600, 1927, 2071, 2157 |
| MhlI | GDGCHC | 3 cut(s) | 202, 339, 1999 |
| MmeI | TCCRAC | 2 cut(s) | 112, 762 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1745, 2034 |
| MspA1I | CMGCKG | 1 cut(s) | 451 |
| MspCI | CTTAAG | 1 cut(s) | 1820 |
| MspI | CCGG | 2 cut(s) | 1019, 1649 |
| MspR9I | CCNGG | 2 cut(s) | 203, 1649 |
| MvaI | CCWGG | 1 cut(s) | 203 |
| MvnI | CGCG | 1 cut(s) | 1394 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1499, 1689 |
| NciI | CCSGG | 1 cut(s) | 1649 |
| NdeI | CATATG | 1 cut(s) | 1978 |
| NdeII | GATC | 6 cut(s) | 322, 1464, 1600, 1927, 2071, 2157 |
| NlaIII | CATG | 6 cut(s) | 790, 1471, 1682, 1770, 1839, 2221 |
| NlaIV | GGNNCC | 2 cut(s) | 200, 1984 |
| NmuCI | GTSAC | 4 cut(s) | 1027, 1237, 1552, 2101 |
| NspI | RCATGY | 1 cut(s) | 1770 |
| PaqCI | CACCTGC | 1 cut(s) | 506 |
| PciI | ACATGT | 1 cut(s) | 1766 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 542 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1745, 2034 |
| PfeI | GAWTC | 5 cut(s) | 542, 793, 2054, 2111, 2213 |
| PfoI | TCCNGGA | 1 cut(s) | 1647 |
| PkrI | GCNGC | 6 cut(s) | 70, 123, 445, 471, 1396, 1691 |
| Ple19I | CGATCG | 1 cut(s) | 325 |
| Ppu21I | YACGTR | 2 cut(s) | 822, 1032 |
| PscI | ACATGT | 1 cut(s) | 1766 |
| PshBI | ATTAAT | 1 cut(s) | 1257 |
| Psp124BI | GAGCTC | 1 cut(s) | 339 |
| Psp6I | CCWGG | 1 cut(s) | 201 |
| PspFI | CCCAGC | 3 cut(s) | 170, 447, 1544 |
| PspGI | CCWGG | 1 cut(s) | 201 |
| PspN4I | GGNNCC | 2 cut(s) | 200, 1984 |
| PspOMI | GGGCCC | 1 cut(s) | 198 |
| PspPI | GGNCC | 3 cut(s) | 198, 199, 205 |
| PvuI | CGATCG | 1 cut(s) | 325 |
| PvuII | CAGCTG | 1 cut(s) | 451 |
| RsaI | GTAC | 3 cut(s) | 281, 2186, 2292 |
| RsaNI | GTAC | 3 cut(s) | 280, 2185, 2291 |
| SacI | GAGCTC | 1 cut(s) | 339 |
| SatI | GCNGC | 6 cut(s) | 69, 122, 444, 470, 1395, 1690 |
| Sau3AI | GATC | 6 cut(s) | 322, 1464, 1600, 1927, 2071, 2157 |
| Sau96I | GGNCC | 3 cut(s) | 198, 199, 205 |
| ScrFI | CCNGG | 2 cut(s) | 203, 1649 |
| SduI | GDGCHC | 3 cut(s) | 202, 339, 1999 |
| SfaNI | GCATC | 9 cut(s) | 565, 649, 1005, 1069, 1092, 1463, 1852, 2182, 2238 |
| SfcI | CTRYAG | 1 cut(s) | 663 |
| SmlI | CTYRAG | 2 cut(s) | 15, 1820 |
| SmoI | CTYRAG | 2 cut(s) | 15, 1820 |
| SsiI | CCGC | 9 cut(s) | 66, 69, 145, 318, 469, 1394, 1426, 1493, 2027 |
| SspI | AATATT | 2 cut(s) | 619, 1774 |
| SspMI | CTAG | 3 cut(s) | 158, 1197, 1643 |
| SstI | GAGCTC | 1 cut(s) | 339 |
| StyD4I | CCNGG | 2 cut(s) | 201, 1647 |
| TaaI | ACNGT | 5 cut(s) | 370, 638, 1357, 1735, 2140 |
| TaiI | ACGT | 3 cut(s) | 614, 824, 1034 |
| TaqI | TCGA | 2 cut(s) | 545, 796 |
| TatI | WGTACW | 2 cut(s) | 2184, 2290 |
| TauI | GCSGC | 3 cut(s) | 71, 472, 1397 |
| TfiI | GAWTC | 5 cut(s) | 542, 793, 2054, 2111, 2213 |
| TscAI | CASTG | 1 cut(s) | 2113 |
| TseFI | GTSAC | 4 cut(s) | 1027, 1237, 1552, 2101 |
| TseI | GCWGC | 3 cut(s) | 121, 443, 1689 |
| Tsp45I | GTSAC | 4 cut(s) | 1027, 1237, 1552, 2101 |
| TspGWI | ACGGA | 3 cut(s) | 204, 394, 2283 |
| TspRI | CASTG | 1 cut(s) | 2113 |
| Vha464I | CTTAAG | 1 cut(s) | 1820 |
| VneI | GTGCAC | 1 cut(s) | 1995 |
| VspI | ATTAAT | 1 cut(s) | 1257 |
| XapI | RAATTY | 3 cut(s) | 2083, 2123, 2257 |
| XceI | RCATGY | 1 cut(s) | 1770 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1976 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1745, 2034 |
| XspI | CTAG | 3 cut(s) | 158, 1197, 1643 |