Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011910

Physical Location & Seq

Genomic Coordinates Reverse (-)

25871194 .. 25874929

Gene Structure 3736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1179000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2319 bp

ATGGCAGCTCCACCTCAAACCTTAACCCAACCCCAACTCCTCAAAACCCTAACCAACCTCTTGACCTCCACAAAAACCCTAAACCCAGAAACCCTAAAACCCCACATTCCGCATCTGACCCAACCCCTCCTCCTCTCCATCATCTCCTCCAAAACCCTAGCCTCCCAACCCACCACCCTCCTCTTCTTCTTCCGGTGGGCCCAGGCCCACACGCCCTCCCTAACCCAATGCCCACAAACCCTCCTCGTCCTCCTCCCCTCCCTCTTCACCCACCACAAGTTCTCCGATGCCAAAGCCCTCCTCGTCCAATTCATCGCCGCCGATCGCCAGAACGATCTCCACCGCCTTATTCTGCACCCGGACCCCACCGTGCCGAAGCCCTCGAAGGCCCTTCTGGACACTTCCATTGGGGCATATGTGCAATCCGGGAAACCCCACCTTGCAGCCCAAGTGTTTGATAAAATGAAGCGGCTTCGGCTTCAGCCCAATTTACTCACCTGCAATACTCTGATTAATGGTCTGGTAAGGTACCGGTCCTCGCATTCGATTTCATTGTCTAGAGGTGTGTTTAAGCATGCTGTTGAGTTAGGGGTTAAAGTGAATACGAATACTTTTAACATTTTGATATATGGGTATTGCTTGGAACATAAGTTTAGGGATGCTGTAGAGTTGTTGAGTAGGATGAGTGAATTCAGATGCGTGCCCGATAATGTGAGCTATAATACGATATTGGACTGGCTGTGTAAGAAGGGGCAGTTGAATGAGGCCCGGGACTTGTTGTTGGACATGAAGAATCGAGGTTTGTTTCCGAATAGGAACACCTATAACATTTTGGTTTGTGGGTATTGTAAGATGGGGTGGTTGAAGGAGGCAATGCAGGTGATCGAATTGATGACACAGAACAGTTTGTTGCCGGATATTTGGACGTACAATGTCTTGATTAAGGGGTTGTGTAGGGAGGGTAGGATTGAGGAGGCTCTGAGGCTTCGGGTTGAGATGGAAAATTTGAAGTTGATGCCTGATGTTGTCACGTATAACACATTGATTGATGGGTATTTTGAGTGGAGGAGCAATTCAGAGACCTTTAAGTTGATTGAGGAGATGCGTGCAAAGGGAGTGAAAGCAAATGCAGTTACTCACAATATAATAGTAAAGTGGTTCTGTAAAGAAGGGAAGCTGGATGAAGCCAGTGATACTTTAAGGAAGATGGAGGAAGATGGGTTTGCTCCTGATTGTGTCACTTATAATACTTTAATTAACGAGTATTGCAAGGCAGGGAAAATGGCAGAAGCATTTAAAATGATGAATGAGATGGGTATGAAAGGTTTGAAGATGGACATCTTTACTCTCAATACTCTTCTTCACACTCTTTGCAGTGACAAGAAGCTTGATGAGGCATTTGAGTTGTTTCATACTTCAACTAAGCGGGGTTATATTCTTGATGAGGTAAGCTATGGAACCTTGATCACGGGATGTTTTAAGAACGAAAAGGCCAACAAGGGTTTTGAGCTTTGGGATGAGATGAAGGAGAAGCAGGTTGTTCCCAGCATTGCCACCTATAACACTATAATTGGAGGGCTCTGCCAGTCTGGAAAAACTGATCAAGCATTCGACAAGTTGAATGAGCTTGTAGAGAGGGGTCTAGTCCCTGATGGAACTACATACAACACGATAATTCATGGTTACTGCCGTGAGGGGAATGTTGAGAAAGCATTTCAGTTCCACAACAAAATGATTGAGAAATCATTCAAGCCAGATGTCTATACATGTAATACTCTTCTTTGTGGGCTATGTAGAGAGGGCATGTTAGAAAAAGCTCTGAAGCTTTTTAACACATGGATTTCGAAAGGAAAAGACATTGATGCAGTTACTTACAACACATTAATATCAAGCCTTTGCAAAGAGGGAAGGTTTGATGATGTTTTTGATCTATTTTTGGAAATGGAAGAAAAGAGATTTGAACCGGACCAGTATACATACACTGCCATTTTGGGTGCACTTACTGATGCTGGTAGGATCAAGGAAGCAGAAGAGTTTATTTTGAAAATGATTGATATGGGAAAGTTACCTGGTTTGCCCTCAAAATTGGAGGAGGTGAAAAATGGAGTGACCGAAACATCAGTTGAATCTGATTCAAGCACAGGTGCTTATTCAGAGAAAATCATTGAGTGTTGCTTTCAAGGTAAATACAAGGATGCAATGCACATTTTGGAAGAATCAATGCAGAAGGGCATGACCTTAAGTCGAGATGTTTATATTAATTTGATGAATGGGCTCATTAAGAGGCGAAAAGGCACATCAAAGGCTGTTAAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

773

Amino Acids

87.71

Weight (kDa)

8.19

Isoelectric Point (pI)

32.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	136 - 172	5.5e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	136 - 176	1.8e-08	PPR repeat family
PPR_3	PF13812	189 - 246	1.1e-07	Pentatricopeptide repeat domain
PPR_long	PF17177	189 - 322	1e-05	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	197 - 229	3e-07	PPR repeat
PPR_2	PF13041	201 - 240	5.8e-07	PPR repeat family
PPR_1	PF12854	233 - 264	3.1e-08	PPR repeat
PPR_2	PF13041	235 - 284	1.8e-18	PPR repeat family
PPR	PF01535	238 - 268	1.2e-06	PPR repeat
PPR_3	PF13812	259 - 315	2.4e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	266 - 298	8.2e-11	PPR repeat
PPR_2	PF13041	274 - 319	2.7e-13	PPR repeat family
PPR	PF01535	274 - 301	3.1e-06	PPR repeat
PPR_1	PF12854	303 - 334	8.4e-12	PPR repeat
PPR_2	PF13041	305 - 352	2.9e-16	PPR repeat family
PPR	PF01535	309 - 335	3.7e-07	PPR repeat
PPR_3	PF13812	331 - 388	1.9e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	338 - 369	1.8e-06	PPR repeat
PPR_2	PF13041	340 - 389	3.7e-14	PPR repeat family
PPR_long	PF17177	359 - 455	3.6e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	363 - 422	1.6e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	371 - 404	3.3e-09	PPR repeat
PPR_2	PF13041	378 - 420	1.7e-11	PPR repeat family
TPR_24	PF23276	396 - 472	6.7e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	407 - 438	2.4e-14	PPR repeat
PPR_2	PF13041	410 - 458	2.8e-16	PPR repeat family
PPR	PF01535	413 - 443	4.9e-08	PPR repeat
PPR_1	PF12854	441 - 471	7.4e-08	PPR repeat
PPR_2	PF13041	446 - 494	5.2e-10	PPR repeat family
PPR_long	PF17177	458 - 587	5.3e-11	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	468 - 577	1.5e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	470 - 525	4.8e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	481 - 529	1.9e-14	PPR repeat family
PPR_1	PF12854	512 - 542	2.9e-08	PPR repeat
PPR_2	PF13041	515 - 557	1.8e-11	PPR repeat family
TPR_24	PF23276	533 - 645	4.2e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	540 - 594	1.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	546 - 578	2.1e-13	PPR repeat
PPR_2	PF13041	550 - 599	1.8e-18	PPR repeat family
PPR	PF01535	554 - 582	5.9e-09	PPR repeat
PPR_1	PF12854	582 - 611	3.8e-09	PPR repeat
PPR_2	PF13041	585 - 625	2.4e-09	PPR repeat family
PPR	PF01535	588 - 617	4.2e-06	PPR repeat
PPR_3	PF13812	616 - 667	9.7e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	618 - 649	5.9e-10	PPR repeat
PPR_2	PF13041	621 - 667	1.7e-16	PPR repeat family
PPR	PF01535	623 - 652	2.1e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16880
fragaria_vesca	FvH4_7g20132
malus_domestica	MD01G1131000.v1.1 MD07G1179000.v1.1
prunus_persica	Prupe.2G218100_v2.0.a1 Prupe.2G218100_v2.0.a1
pyrus_communis	pycom01g13980 pycom07g17270
rosa_chinensis	RchiOBHm_Chr1g0364091
rosa_laevigata	RLG00000027517
rosa_multiflora	Rmu_sc0000071.1_g000021 Rmu_sc0011704.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292650
rosa_rugosa	Rorug01G0313500
rosa_samantha	Rh1AG320900 Rh1BG284100 Rh1CG300500 Rh1DG315500
rosa_wichuraiana	Rw1G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1245
AarI	CACCTGC	2 cut(s)	506, 868
Acc36I	ACCTGC	3 cut(s)	506, 868, 1525
Acc65I	GGTACC	1 cut(s)	528
AccB1I	GGYRCC	1 cut(s)	528
AccI	GTMKAC	1 cut(s)	1973
AciI	CCGC	5 cut(s)	110, 318, 343, 469, 1426
AclWI	GGATC	1 cut(s)	2024
AcsI	RAATTY	2 cut(s)	689, 1003
AcuI	CTGAAG	2 cut(s)	464, 1841
AfaI	GTAC	2 cut(s)	530, 929
AflII	CTTAAG	1 cut(s)	2239
AflIII	ACRYGT	1 cut(s)	1766
AgeI	ACCGGT	1 cut(s)	531
AhdI	GACNNNNNGTC	1 cut(s)	2241
AjnI	CCWGG	2 cut(s)	201, 2068
Alw21I	GWGCWC	1 cut(s)	1999
Alw26I	GTCTC	1 cut(s)	1073
Alw44I	GTGCAC	1 cut(s)	1995
AlwI	GGATC	1 cut(s)	2024
Ama87I	CYCGRG	1 cut(s)	768
AoxI	GGCC	5 cut(s)	198, 204, 387, 765, 1491
ApaI	GGGCCC	1 cut(s)	202
ApaLI	GTGCAC	1 cut(s)	1995
ApeKI	GCWGC	2 cut(s)	5, 443
ApoI	RAATTY	2 cut(s)	689, 1003
AseI	ATTAAT	3 cut(s)	513, 1883, 2259
AsiGI	ACCGGT	1 cut(s)	531
Asp700I	GAANNNNTTC	1 cut(s)	1745
Asp718I	GGTACC	1 cut(s)	528
AspS9I	GGNCC	8 cut(s)	198, 199, 205, 361, 388, 534, 766, 1966
AsuC2I	CCSGG	4 cut(s)	359, 427, 769, 770
AsuHPI	GGTGA	4 cut(s)	259, 487, 892, 2107
AsuII	TTCGAA	1 cut(s)	1844
AvaI	CYCGRG	1 cut(s)	768
AvaII	GGWCC	3 cut(s)	361, 534, 1966
BaeGI	GKGCMC	3 cut(s)	202, 705, 1999
BanI	GGYRCC	1 cut(s)	528
BanII	GRGCYC	3 cut(s)	202, 1581, 2277
Bbv12I	GWGCWC	1 cut(s)	1999
BbvI	GCAGC	2 cut(s)	17, 455
BccI	CCATC	9 cut(s)	146, 847, 991, 1043, 1201, 1211, 1306, 1327, 1646
BceAI	ACGGC	1 cut(s)	1674
BciT130I	CCWGG	2 cut(s)	203, 2070
BclI	TGATCA	2 cut(s)	1464, 1600
BcnI	CCSGG	4 cut(s)	359, 427, 769, 770
BcoDI	GTCTC	1 cut(s)	1073
BfaI	CTAG	3 cut(s)	158, 558, 1643
BfmI	CTRYAG	1 cut(s)	663
BfrI	CTTAAG	1 cut(s)	2239
BfuAI	ACCTGC	3 cut(s)	506, 868, 1525
BisI	GCNGC	4 cut(s)	6, 318, 444, 470
BlsI	GCNGC	4 cut(s)	7, 319, 445, 471
Bme1390I	CCNGG	6 cut(s)	203, 359, 427, 769, 770, 2070
Bme18I	GGWCC	3 cut(s)	361, 534, 1966
BmeRI	GACNNNNNGTC	1 cut(s)	2241
BmeT110I	CYCGRG	1 cut(s)	768
BmgT120I	GGNCC	8 cut(s)	198, 199, 205, 361, 388, 534, 766, 1966
BmiI	GGNNCC	4 cut(s)	200, 363, 530, 1459
BmrFI	CCNGG	6 cut(s)	203, 359, 427, 769, 770, 2070
BmsI	GCATC	9 cut(s)	121, 277, 649, 686, 1005, 1092, 1852, 1996, 2185
Bpu14I	TTCGAA	1 cut(s)	1844
BpuMI	CCSGG	4 cut(s)	359, 427, 769, 770
BsaAI	YACGTR	1 cut(s)	1032
BsaBI	GATNNNNATC	1 cut(s)	1337
BsaI	GGTCTC	1 cut(s)	1073
BsaJI	CCNNGG	2 cut(s)	201, 768
BsaWI	WCCGGW	3 cut(s)	192, 531, 1963
Bse118I	RCCGGY	1 cut(s)	531
Bse1I	ACTGG	4 cut(s)	740, 1188, 1585, 1969
Bse3DI	GCAATG	3 cut(s)	879, 1548, 2205
Bse8I	GATNNNNATC	1 cut(s)	1337
BseBI	CCWGG	2 cut(s)	203, 2070
BseDI	CCNNGG	2 cut(s)	201, 768
BseGI	GGATG	6 cut(s)	664, 687, 1186, 1478, 1522, 2200
BseJI	GATNNNNATC	1 cut(s)	1337
BseMI	GCAATG	3 cut(s)	879, 1548, 2205
BseMII	CTCAG	1 cut(s)	971
BseNI	ACTGG	4 cut(s)	740, 1188, 1585, 1969
BseSI	GKGCMC	3 cut(s)	202, 705, 1999
BseXI	GCAGC	2 cut(s)	17, 455
BseYI	CCCAGC	1 cut(s)	1544
BsgI	GTGCAG	1 cut(s)	338
Bsh1285I	CGRYCG	1 cut(s)	325
BshFI	GGCC	5 cut(s)	200, 206, 389, 767, 1493
BshNI	GGYRCC	1 cut(s)	528
BshTI	ACCGGT	1 cut(s)	531
BsiEI	CGRYCG	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	1999
BsiHKCI	CYCGRG	1 cut(s)	768
BsiSI	CCGG	7 cut(s)	193, 359, 426, 532, 769, 914, 1964
BslFI	GGGAC	2 cut(s)	785, 1631
BsmAI	GTCTC	1 cut(s)	1073
BsmFI	GGGAC	2 cut(s)	785, 1631
BsmI	GAATGC	2 cut(s)	541, 1607
BsnI	GGCC	5 cut(s)	200, 206, 389, 767, 1493
Bso31I	GGTCTC	1 cut(s)	1073
BsoBI	CYCGRG	1 cut(s)	768
Bsp119I	TTCGAA	1 cut(s)	1844
Bsp120I	GGGCCC	1 cut(s)	198
Bsp1286I	GDGCHC	5 cut(s)	202, 705, 1581, 1999, 2277
Bsp143I	GATC	7 cut(s)	322, 334, 882, 1464, 1600, 1927, 2016
BspACI	CCGC	5 cut(s)	110, 318, 343, 469, 1426
BspANI	GGCC	5 cut(s)	200, 206, 389, 767, 1493
BspCNI	CTCAG	1 cut(s)	972
BspLI	GGNNCC	4 cut(s)	200, 363, 530, 1459
BspMI	ACCTGC	3 cut(s)	506, 868, 1525
BspPI	GGATC	1 cut(s)	2024
BspT104I	TTCGAA	1 cut(s)	1844
BspT107I	GGYRCC	1 cut(s)	528
BspTI	CTTAAG	1 cut(s)	2239
BspTNI	GGTCTC	1 cut(s)	1073
BsrDI	GCAATG	3 cut(s)	879, 1548, 2205
BsrFI	RCCGGY	1 cut(s)	531
BsrI	ACTGG	4 cut(s)	740, 1188, 1585, 1969
BssAI	RCCGGY	1 cut(s)	531
BssECI	CCNNGG	2 cut(s)	201, 768
BssMI	GATC	7 cut(s)	322, 334, 882, 1464, 1600, 1927, 2016
BssNAI	GTATAC	1 cut(s)	1974
Bst1107I	GTATAC	1 cut(s)	1974
Bst2UI	CCWGG	2 cut(s)	203, 2070
Bst4CI	ACNGT	2 cut(s)	370, 905
Bst6I	CTCTTC	5 cut(s)	188, 269, 1362, 1782, 2025
BstAFI	CTTAAG	1 cut(s)	2239
BstBAI	YACGTR	1 cut(s)	1032
BstBI	TTCGAA	1 cut(s)	1844
BstC8I	GCNNGC	3 cut(s)	576, 701, 1107
BstDEI	CTNAG	2 cut(s)	980, 1422
BstF5I	GGATG	6 cut(s)	664, 687, 1186, 1478, 1522, 2200
BstKTI	GATC	7 cut(s)	325, 337, 885, 1467, 1603, 1930, 2019
BstMAI	GTCTC	1 cut(s)	1073
BstMBI	GATC	7 cut(s)	322, 334, 882, 1464, 1600, 1927, 2016
BstMCI	CGRYCG	1 cut(s)	325
BstMWI	GCNNNNNNNGC	1 cut(s)	475
BstNI	CCWGG	2 cut(s)	203, 2070
BstNSI	RCATGY	3 cut(s)	578, 1770, 1807
BstSCI	CCNGG	6 cut(s)	201, 357, 425, 767, 768, 2068
BstSFI	CTRYAG	1 cut(s)	663
BstSLI	GKGCMC	3 cut(s)	202, 705, 1999
BstV1I	GCAGC	2 cut(s)	17, 455
BstZ17I	GTATAC	1 cut(s)	1974
BsuRI	GGCC	5 cut(s)	200, 206, 389, 767, 1493
BtgZI	GCGATG	1 cut(s)	298
BtsCI	GGATG	6 cut(s)	664, 687, 1186, 1478, 1522, 2200
BtsI	GCAGTG	2 cut(s)	1381, 1980
BtsIMutI	CAGTG	3 cut(s)	1195, 1381, 1980
BveI	ACCTGC	3 cut(s)	506, 868, 1525
Cac8I	GCNNGC	3 cut(s)	576, 701, 1107
Cfr10I	RCCGGY	1 cut(s)	531
Cfr13I	GGNCC	8 cut(s)	198, 199, 205, 361, 388, 534, 766, 1966
Cfr9I	CCCGGG	1 cut(s)	768
CsiI	ACCWGGT	1 cut(s)	2068
Csp6I	GTAC	2 cut(s)	529, 928
CspAI	ACCGGT	1 cut(s)	531
CviAII	CATG	7 cut(s)	575, 787, 1679, 1767, 1804, 1836, 2233
CviQI	GTAC	2 cut(s)	529, 928
DdeI	CTNAG	2 cut(s)	980, 1422
DpnI	GATC	7 cut(s)	324, 336, 884, 1466, 1602, 1929, 2018
DpnII	GATC	7 cut(s)	322, 334, 882, 1464, 1600, 1927, 2016
DraI	TTTAAA	1 cut(s)	1297
DriI	GACNNNNNGTC	1 cut(s)	2241
Eam1104I	CTCTTC	5 cut(s)	188, 269, 1362, 1782, 2025
Eam1105I	GACNNNNNGTC	1 cut(s)	2241
EarI	CTCTTC	5 cut(s)	188, 269, 1362, 1782, 2025
Eco24I	GRGCYC	3 cut(s)	202, 1581, 2277
Eco31I	GGTCTC	1 cut(s)	1073
Eco47I	GGWCC	3 cut(s)	361, 534, 1966
Eco57I	CTGAAG	2 cut(s)	464, 1841
Eco88I	CYCGRG	1 cut(s)	768
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRI	GAATTC	1 cut(s)	689
EcoRII	CCWGG	2 cut(s)	201, 2068
EcoT38I	GRGCYC	3 cut(s)	202, 1581, 2277
FaeI	CATG	7 cut(s)	578, 790, 1682, 1770, 1807, 1839, 2236
FaqI	GGGAC	2 cut(s)	785, 1631
FatI	CATG	7 cut(s)	574, 786, 1678, 1766, 1803, 1835, 2232
FauI	CCCGC	1 cut(s)	1419
FauNDI	CATATG	1 cut(s)	415
FbaI	TGATCA	2 cut(s)	1464, 1600
FblI	GTMKAC	1 cut(s)	1973
Fnu4HI	GCNGC	4 cut(s)	6, 318, 444, 470
FokI	GGATG	6 cut(s)	671, 694, 1193, 1485, 1529, 2207
FriOI	GRGCYC	3 cut(s)	202, 1581, 2277
Fsp4HI	GCNGC	4 cut(s)	6, 318, 444, 470
FspBI	CTAG	3 cut(s)	158, 558, 1643
GluI	GCNGC	4 cut(s)	6, 318, 444, 470
GsaI	CCCAGC	1 cut(s)	1548
HaeIII	GGCC	5 cut(s)	200, 206, 389, 767, 1493
HapII	CCGG	7 cut(s)	193, 359, 426, 532, 769, 914, 1964
Hin1II	CATG	7 cut(s)	578, 790, 1682, 1770, 1807, 1839, 2236
HindIII	AAGCTT	2 cut(s)	1385, 1823
HinfI	GANTC	4 cut(s)	793, 2126, 2132, 2216
HpaII	CCGG	7 cut(s)	193, 359, 426, 532, 769, 914, 1964
HphI	GGTGA	4 cut(s)	259, 487, 892, 2107
Hpy166II	GTNNAC	2 cut(s)	1974, 1997
Hpy188III	TCNNGA	8 cut(s)	61, 395, 558, 937, 1229, 1439, 1590, 2246
Hpy8I	GTNNAC	2 cut(s)	1974, 1997
HpyAV	CCTTC	8 cut(s)	379, 401, 742, 859, 1163, 1519, 1902, 2221
HpyCH4III	ACNGT	2 cut(s)	370, 905
HpyCH4IV	ACGT	2 cut(s)	926, 1031
HpyF10VI	GCNNNNNNNGC	1 cut(s)	475
HpyF3I	CTNAG	2 cut(s)	980, 1422
HpySE526I	ACGT	2 cut(s)	926, 1031
Hsp92II	CATG	7 cut(s)	578, 790, 1682, 1770, 1807, 1839, 2236
KpnI	GGTACC	1 cut(s)	532
Ksp22I	TGATCA	2 cut(s)	1464, 1600
Kzo9I	GATC	7 cut(s)	322, 334, 882, 1464, 1600, 1927, 2016
LmnI	GCTCC	3 cut(s)	13, 1068, 1231
Lsp1109I	GCAGC	2 cut(s)	17, 455
LweI	GCATC	9 cut(s)	121, 277, 649, 686, 1005, 1092, 1852, 1996, 2185
MabI	ACCWGGT	1 cut(s)	2068
MaeI	CTAG	3 cut(s)	158, 558, 1643
MaeII	ACGT	2 cut(s)	926, 1031
MaeIII	GTNAC	8 cut(s)	1027, 1132, 1237, 1376, 1682, 1867, 2064, 2107
MalI	GATC	7 cut(s)	324, 336, 884, 1466, 1602, 1929, 2018
MboI	GATC	7 cut(s)	322, 334, 882, 1464, 1600, 1927, 2016
MhlI	GDGCHC	5 cut(s)	202, 705, 1581, 1999, 2277
MmeI	TCCRAC	1 cut(s)	762
MroXI	GAANNNNTTC	1 cut(s)	1745
MspCI	CTTAAG	1 cut(s)	2239
MspI	CCGG	7 cut(s)	193, 359, 426, 532, 769, 914, 1964
MspR9I	CCNGG	6 cut(s)	203, 359, 427, 769, 770, 2070
Mva1269I	GAATGC	2 cut(s)	541, 1607
MvaI	CCWGG	2 cut(s)	203, 2070
MwoI	GCNNNNNNNGC	1 cut(s)	475
NciI	CCSGG	4 cut(s)	359, 427, 769, 770
NdeI	CATATG	1 cut(s)	415
NdeII	GATC	7 cut(s)	322, 334, 882, 1464, 1600, 1927, 2016
NlaIII	CATG	7 cut(s)	578, 790, 1682, 1770, 1807, 1839, 2236
NlaIV	GGNNCC	4 cut(s)	200, 363, 530, 1459
NmuCI	GTSAC	4 cut(s)	1027, 1237, 1376, 2107
NspI	RCATGY	3 cut(s)	578, 1770, 1807
NspV	TTCGAA	1 cut(s)	1844
PacI	TTAATTAA	1 cut(s)	1257
PaeI	GCATGC	1 cut(s)	578
PaqCI	CACCTGC	2 cut(s)	506, 868
PciI	ACATGT	1 cut(s)	1766
PctI	GAATGC	2 cut(s)	541, 1607
PdmI	GAANNNNTTC	1 cut(s)	1745
PfeI	GAWTC	4 cut(s)	793, 2126, 2132, 2216
PfoI	TCCNGGA	1 cut(s)	425
PinAI	ACCGGT	1 cut(s)	531
PkrI	GCNGC	4 cut(s)	7, 319, 445, 471
Ple19I	CGATCG	1 cut(s)	325
Ppu21I	YACGTR	1 cut(s)	1032
PscI	ACATGT	1 cut(s)	1766
PshBI	ATTAAT	3 cut(s)	513, 1883, 2259
PsiI	TTATAA	1 cut(s)	1245
Psp6I	CCWGG	2 cut(s)	201, 2068
PspFI	CCCAGC	1 cut(s)	1544
PspGI	CCWGG	2 cut(s)	201, 2068
PspN4I	GGNNCC	4 cut(s)	200, 363, 530, 1459
PspOMI	GGGCCC	1 cut(s)	198
PspPI	GGNCC	8 cut(s)	198, 199, 205, 361, 388, 534, 766, 1966
PvuI	CGATCG	1 cut(s)	325
RsaI	GTAC	2 cut(s)	530, 929
RsaNI	GTAC	2 cut(s)	529, 928
SatI	GCNGC	4 cut(s)	6, 318, 444, 470
Sau3AI	GATC	7 cut(s)	322, 334, 882, 1464, 1600, 1927, 2016
Sau96I	GGNCC	8 cut(s)	198, 199, 205, 361, 388, 534, 766, 1966
ScrFI	CCNGG	6 cut(s)	203, 359, 427, 769, 770, 2070
SduI	GDGCHC	5 cut(s)	202, 705, 1581, 1999, 2277
SexAI	ACCWGGT	1 cut(s)	2068
SfaNI	GCATC	9 cut(s)	121, 277, 649, 686, 1005, 1092, 1852, 1996, 2185
SfcI	CTRYAG	1 cut(s)	663
SfuI	TTCGAA	1 cut(s)	1844
SinI	GGWCC	3 cut(s)	361, 534, 1966
SmaI	CCCGGG	1 cut(s)	770
SmlI	CTYRAG	1 cut(s)	2239
SmoI	CTYRAG	1 cut(s)	2239
SphI	GCATGC	1 cut(s)	578
SsiI	CCGC	5 cut(s)	110, 318, 343, 469, 1426
SspMI	CTAG	3 cut(s)	158, 558, 1643
StyD4I	CCNGG	6 cut(s)	201, 357, 425, 767, 768, 2068
TaaI	ACNGT	2 cut(s)	370, 905
TaiI	ACGT	2 cut(s)	929, 1034
TaqI	TCGA	7 cut(s)	383, 545, 796, 885, 1611, 1844, 2245
TaqII	GACCGA	1 cut(s)	2126
TauI	GCSGC	2 cut(s)	320, 472
TfiI	GAWTC	4 cut(s)	793, 2126, 2132, 2216
TscAI	CASTG	3 cut(s)	1195, 1381, 1987
TseFI	GTSAC	4 cut(s)	1027, 1237, 1376, 2107
TseI	GCWGC	2 cut(s)	5, 443
Tsp45I	GTSAC	4 cut(s)	1027, 1237, 1376, 2107
TspMI	CCCGGG	1 cut(s)	768
TspRI	CASTG	3 cut(s)	1195, 1381, 1987
Vha464I	CTTAAG	1 cut(s)	2239
VneI	GTGCAC	1 cut(s)	1995
VpaK11BI	GGWCC	3 cut(s)	361, 534, 1966
VspI	ATTAAT	3 cut(s)	513, 1883, 2259
XapI	RAATTY	2 cut(s)	689, 1003
XbaI	TCTAGA	1 cut(s)	557
XceI	RCATGY	3 cut(s)	578, 1770, 1807
XmaI	CCCGGG	1 cut(s)	768
XmiI	GTMKAC	1 cut(s)	1973
XmnI	GAANNNNTTC	1 cut(s)	1745
XspI	CTAG	3 cut(s)	158, 558, 1643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.