Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011910

Physical Location & Seq

Genomic Coordinates Reverse (-)

55364301 .. 55367492

Gene Structure 3192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58879

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1926 bp

ATGACCAACCCAACACCTCGAGAGCAACCCCAAATCCTGGAAACCATCACAACCCTCTTAATCTCCACCAAAACCCCGCAACAGCTCCAATCCCTTAAACCCTACATTCCCCACCTAACGGAGCCCCTCCTCCTCTCTCTCCTCCGCTCCAGAACCCTAGCCTCCCACCCCTCCACTCTCCTCTCCTTCTTCCACTGGGCCCAGGCCCACATCCCCCTCCTCTCCCAAACCCCTCGCCCCCTCCTCACCCTCCTCCCCTCTCTCTTCTCCCACAACAAATTCGCCGACGCCAAAACCCTCCTCGTCCAATTCATCTCCTCCGATTCCCAAAACACCCTCCACCGCCTCATCCTCCACCCGGACGACGCCGTTCCGCGCCGCTGCAAGGCCCTCCTCGACACCTCCATCGGCGCCTATGTCCACGTCGGAAAGCCCCACCTCGCCGCCCAGCTCTTCTCCAAAATGAAGAAGCTCCGGTACCGGCCGAATCTCCTCACCTGCAACACTCTGCTCAATGCTCTGGTAAGGTGTGACTCGTCTCATTCCATTGCAATGTGTGTAGATATAGTTAGGGATGCCATTGGACTAGGGGTTACTGTTAATACCGGAACTTTTAACATTTTGATTTACGGGCATTGCTTGGAGAATAAGTTTAGGGATGCCGTCGATTTGTTGAGCAAGATGAATGAGTTTGGATGCCAACCTGATAATGTGAGCTATAATACGATTTTGGATTGGTTGTGTAAGAAGGGGAAGTTGAGTGAGGCGAGGGAGTTGTTGATGGACATGAAGTTACGAGGGGTGTTGCCGAATAGGAACACGTATAATATTTTGGTTTTCGGGTATTGTAAGCTGGGGTGGTTGAGGGAGGCGGTGCAGGTGGTGGAGTTGATGACACAGGGTAATTTGTTGCCGGATGTTTGGACGTATAATATGTTGATTAGTGGGTTGTGTGGAGCGGGCAGGATGGAGGAGGCGATAAGGCTGAGGGATGAGATGGAGAAGTTGAAGCTGGTGCCAGATGTTGTCACGTATAATACGTTGATTAACTGGTATTTTGAGGGGAACGATGATTCTAAGGCGTTGGAGTTGCTTGAGGAGATGCTTGAACGGGGAGTGAGAGCAAATGAAGTTACTCACAATATAATGGTGAAGTGGTATTGTAAGGAAGGGAAGATGGATGAAGCAAGAGATACTATTAGGAAGATGAAGGAAGAGGGGTTTGCTCCTTGTTCTGTCACTTACAATACTTTGATCAACGGATATTGCAAAGCAGGGAAAATGGAAGAAGCATATAGGGTGATGGATGAGATGTTTAGGAAAGGTTTGGATATGAACACTTTTACCCTCAATACTATTCTTCATGCATTTTGTAGTCAGAAGAAGCTAGACAAGGCATTTACATTGTTCCATACTTCCGTTGAGAGGGGTTATATACTTGATGAGGTGACCTATGGAACTCTGATCATGGGATGCTTTAAGAACGAAAATCCAGACAAGGCTTTGGAGCTTTGGGAAGAGATGAAGGAGAAACAGATCCTTCCTAGCATTGTCACCTACAACTCTATAATTGGAGGCCTATGCCAGTCTGGGAAAACCGATCAAGCACTTGATAAGTTGAATGAGCTTGTAACGACGGATCTAATCCCTGATGAAACTACATACAACACGATAATTCATGGCTATTGCCGTGAGGGTCTGGTTGAGAAAGCATTTCAGTTCCACAACAAAATGGTTGAGAAATCGTTGAAGCCGGATGTGTATACATGTAATATTCTTCTTTCTGGACTATGCAGTCAGGGTATGTTAGAAAAAGCTCGTAGGCTTTTTAACACCTGGATTTCTAAGGGAAAAGACATTGATGCAGTTACTTACAACATATTGATATCCGGCCTTTGCAAAGAACGGAGATGGGGTGACCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

641

Amino Acids

72.99

Weight (kDa)

7.77

Isoelectric Point (pI)

29.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	136 - 176	3.7e-07	PPR repeat family
PPR_1	PF12854	197 - 228	8.1e-07	PPR repeat
PPR_2	PF13041	201 - 244	6.6e-11	PPR repeat family
PPR_3	PF13812	224 - 279	2.5e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	232 - 264	5.1e-10	PPR repeat
PPR_2	PF13041	235 - 284	1.2e-17	PPR repeat family
PPR	PF01535	238 - 268	5.1e-07	PPR repeat
PPR_3	PF13812	259 - 315	2.1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	266 - 298	6.9e-10	PPR repeat
PPR_2	PF13041	274 - 318	1.4e-11	PPR repeat family
PPR_3	PF13812	294 - 352	7.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	302 - 334	5.2e-13	PPR repeat
PPR_2	PF13041	305 - 349	2.6e-15	PPR repeat family
PPR	PF01535	309 - 336	3.6e-07	PPR repeat
PPR_3	PF13812	329 - 388	4.2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	338 - 368	5.6e-07	PPR repeat
PPR_2	PF13041	340 - 389	5.9e-16	PPR repeat family
PPR	PF01535	343 - 373	2.9e-06	PPR repeat
PPR_long	PF17177	359 - 455	2.1e-09	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	362 - 471	5.7e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	364 - 422	1.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	371 - 404	2.3e-07	PPR repeat
PPR_2	PF13041	376 - 410	3e-07	PPR repeat family
PPR	PF01535	378 - 408	1.9e-07	PPR repeat
TPR_24	PF23276	397 - 507	3.5e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	407 - 438	1.2e-13	PPR repeat
PPR_2	PF13041	410 - 458	9.8e-19	PPR repeat family
PPR	PF01535	413 - 443	1.7e-11	PPR repeat
PPR_1	PF12854	441 - 471	1.7e-06	PPR repeat
PPR_2	PF13041	446 - 492	8.8e-10	PPR repeat family
PPR_long	PF17177	458 - 609	9.1e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	469 - 525	4e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	477 - 509	2.4e-07	PPR repeat
PPR_2	PF13041	481 - 529	1.1e-15	PPR repeat family
PPR	PF01535	483 - 512	2.1e-08	PPR repeat
PPR_1	PF12854	512 - 542	4.4e-08	PPR repeat
PPR_2	PF13041	515 - 557	8.1e-10	PPR repeat family
PPR_1	PF12854	548 - 579	1.2e-12	PPR repeat
PPR_2	PF13041	550 - 598	1.2e-19	PPR repeat family
PPR	PF01535	554 - 582	9.1e-09	PPR repeat
PPR_1	PF12854	582 - 611	7.7e-08	PPR repeat
PPR_2	PF13041	589 - 634	1.3e-12	PPR repeat family
PPR_1	PF12854	618 - 637	7.4e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16880
fragaria_vesca	FvH4_7g20132
malus_domestica	MD01G1131000.v1.1 MD07G1179000.v1.1
prunus_persica	Prupe.2G218100_v2.0.a1 Prupe.2G218100_v2.0.a1
pyrus_communis	pycom01g13980 pycom07g17270
rosa_chinensis	RchiOBHm_Chr1g0364091
rosa_laevigata	RLG00000027517
rosa_multiflora	Rmu_sc0000071.1_g000021 Rmu_sc0011704.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292650
rosa_rugosa	Rorug01G0313500
rosa_samantha	Rh1AG320900 Rh1BG284100 Rh1CG300500 Rh1DG315500
rosa_wichuraiana	Rw1G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	506, 868
AasI	GACNNNNNNGTC	1 cut(s)	1794
Acc36I	ACCTGC	2 cut(s)	506, 868
Acc65I	GGTACC	1 cut(s)	477
AccB1I	GGYRCC	3 cut(s)	410, 477, 1015
AccB7I	CCANNNNNTGG	1 cut(s)	37
AccBSI	CCGCTC	2 cut(s)	147, 959
AccI	GTMKAC	1 cut(s)	1763
AccII	CGCG	1 cut(s)	376
AciI	CCGC	8 cut(s)	77, 145, 343, 374, 379, 444, 872, 959
AclWI	GGATC	2 cut(s)	1531, 1647
AcoI	YGGCCR	1 cut(s)	482
AcsI	RAATTY	1 cut(s)	278
AcyI	GRCGYC	3 cut(s)	288, 366, 411
AfaI	GTAC	1 cut(s)	479
AfiI	CCNNNNNNNGG	5 cut(s)	37, 118, 358, 385, 1425
AflIII	ACRYGT	2 cut(s)	819, 1766
AgsI	TTSAA	4 cut(s)	1009, 1109, 1621, 1750
AjiI	CACGTC	1 cut(s)	424
AjnI	CCWGG	3 cut(s)	36, 201, 1835
Alw26I	GTCTC	1 cut(s)	543
AlwI	GGATC	2 cut(s)	1531, 1647
Ama87I	CYCGRG	1 cut(s)	18
AoxI	GGCC	6 cut(s)	198, 204, 387, 482, 1576, 1891
ApaI	GGGCCC	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	381
ApoI	RAATTY	1 cut(s)	278
Asp718I	GGTACC	1 cut(s)	477
AspLEI	GCGC	2 cut(s)	378, 413
AspS9I	GGNCC	4 cut(s)	198, 199, 205, 388
AsuC2I	CCSGG	1 cut(s)	359
AsuHPI	GGTGA	6 cut(s)	238, 487, 1162, 1312, 1459, 1546
AvaI	CYCGRG	1 cut(s)	18
BaeGI	GKGCMC	1 cut(s)	202
BanI	GGYRCC	3 cut(s)	410, 477, 1015
BanII	GRGCYC	2 cut(s)	126, 202
BarI	GAAGNNNNNNTAC	2 cut(s)	461, 493
BbvCI	CCTCAGC	1 cut(s)	986
BbvI	GCAGC	1 cut(s)	368
BccI	CCATC	8 cut(s)	53, 413, 775, 961, 991, 1171, 1297, 1905
BceAI	ACGGC	3 cut(s)	353, 647, 1674
BciT130I	CCWGG	3 cut(s)	38, 203, 1837
BclI	TGATCA	2 cut(s)	1254, 1464
BcnI	CCSGG	1 cut(s)	359
BcoDI	GTCTC	1 cut(s)	543
BfaI	CTAG	4 cut(s)	158, 587, 1388, 1545
BfoI	RGCGCY	1 cut(s)	414
BfuAI	ACCTGC	2 cut(s)	506, 868
BisI	GCNGC	3 cut(s)	379, 382, 444
BlsI	GCNGC	3 cut(s)	380, 383, 445
Bme1390I	CCNGG	4 cut(s)	38, 203, 359, 1837
BmeT110I	CYCGRG	1 cut(s)	18
BmgBI	CACGTC	1 cut(s)	424
BmgT120I	GGNCC	4 cut(s)	198, 199, 205, 388
BmiI	GGNNCC	5 cut(s)	123, 200, 412, 479, 1017
BmrFI	CCNGG	4 cut(s)	38, 203, 359, 1837
BmrI	ACTGGG	1 cut(s)	205
BmsI	GCATC	6 cut(s)	565, 649, 686, 1092, 1463, 1852
BmuI	ACTGGG	1 cut(s)	205
BpmI	CTGGAG	1 cut(s)	133
Bpu10I	CCTNAGC	1 cut(s)	986
BpuEI	CTTGAG	1 cut(s)	1115
BpuMI	CCSGG	1 cut(s)	359
BsaAI	YACGTR	2 cut(s)	822, 1032
BsaHI	GRCGYC	3 cut(s)	288, 366, 411
BsaJI	CCNNGG	1 cut(s)	201
BsaWI	WCCGGW	2 cut(s)	474, 605
BsaXI	ACNNNNNCTCC	3 cut(s)	635, 665, 1900
Bsc4I	CCNNNNNNNGG	5 cut(s)	37, 118, 358, 385, 1425
Bse118I	RCCGGY	1 cut(s)	480
Bse1I	ACTGG	3 cut(s)	200, 1055, 1585
Bse3DI	GCAATG	3 cut(s)	546, 558, 634
BseBI	CCWGG	3 cut(s)	38, 203, 1837
BseDI	CCNNGG	1 cut(s)	201
BseLI	CCNNNNNNNGG	5 cut(s)	37, 118, 358, 385, 1425
BseMI	GCAATG	3 cut(s)	546, 558, 634
BseMII	CTCAG	1 cut(s)	977
BseNI	ACTGG	3 cut(s)	200, 1055, 1585
BseSI	GKGCMC	1 cut(s)	202
BseX3I	CGGCCG	1 cut(s)	482
BseXI	GCAGC	1 cut(s)	368
BseYI	CCCAGC	2 cut(s)	447, 853
BsgI	GTGCAG	1 cut(s)	896
Bsh1236I	CGCG	1 cut(s)	376
Bsh1285I	CGRYCG	1 cut(s)	485
BshFI	GGCC	6 cut(s)	200, 206, 389, 484, 1578, 1893
BshNI	GGYRCC	3 cut(s)	410, 477, 1015
BsiEI	CGRYCG	1 cut(s)	485
BsiHKCI	CYCGRG	1 cut(s)	18
BsiSI	CCGG	7 cut(s)	359, 475, 481, 606, 914, 1754, 1890
BslI	CCNNNNNNNGG	5 cut(s)	37, 118, 358, 385, 1425
BsmAI	GTCTC	1 cut(s)	543
BsmBI	CGTCTC	1 cut(s)	543
BsnI	GGCC	6 cut(s)	200, 206, 389, 484, 1578, 1893
BsoBI	CYCGRG	1 cut(s)	18
Bsp120I	GGGCCC	1 cut(s)	198
Bsp1286I	GDGCHC	2 cut(s)	126, 202
Bsp143I	GATC	5 cut(s)	1254, 1464, 1536, 1600, 1639
BspACI	CCGC	8 cut(s)	77, 145, 343, 374, 379, 444, 872, 959
BspANI	GGCC	6 cut(s)	200, 206, 389, 484, 1578, 1893
BspCNI	CTCAG	1 cut(s)	978
BspFNI	CGCG	1 cut(s)	376
BspLI	GGNNCC	5 cut(s)	123, 200, 412, 479, 1017
BspMI	ACCTGC	2 cut(s)	506, 868
BspPI	GGATC	2 cut(s)	1531, 1647
BspQI	GCTCTTC	1 cut(s)	458
BspT107I	GGYRCC	3 cut(s)	410, 477, 1015
BsrBI	CCGCTC	2 cut(s)	147, 959
BsrDI	GCAATG	3 cut(s)	546, 558, 634
BsrFI	RCCGGY	1 cut(s)	480
BsrI	ACTGG	3 cut(s)	200, 1055, 1585
BssAI	RCCGGY	1 cut(s)	480
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	5 cut(s)	1254, 1464, 1536, 1600, 1639
BssNAI	GTATAC	1 cut(s)	1764
BssNI	GRCGYC	3 cut(s)	288, 366, 411
Bst1107I	GTATAC	1 cut(s)	1764
Bst2UI	CCWGG	3 cut(s)	38, 203, 1837
Bst4CI	ACNGT	1 cut(s)	598
Bst6I	CTCTTC	4 cut(s)	269, 458, 1209, 1512
BstACI	GRCGYC	3 cut(s)	288, 366, 411
BstBAI	YACGTR	2 cut(s)	822, 1032
BstC8I	GCNNGC	1 cut(s)	961
BstDEI	CTNAG	3 cut(s)	986, 1077, 1845
BstEII	GGTNACC	2 cut(s)	1447, 1916
BstFNI	CGCG	1 cut(s)	376
BstH2I	RGCGCY	1 cut(s)	414
BstHHI	GCGC	2 cut(s)	378, 413
BstKTI	GATC	5 cut(s)	1257, 1467, 1539, 1603, 1642
BstMAI	GTCTC	1 cut(s)	543
BstMBI	GATC	5 cut(s)	1254, 1464, 1536, 1600, 1639
BstMCI	CGRYCG	1 cut(s)	485
BstNI	CCWGG	3 cut(s)	38, 203, 1837
BstNSI	RCATGY	1 cut(s)	1770
BstPI	GGTNACC	2 cut(s)	1447, 1916
BstSCI	CCNGG	4 cut(s)	36, 201, 357, 1835
BstSLI	GKGCMC	1 cut(s)	202
BstUI	CGCG	1 cut(s)	376
BstV1I	GCAGC	1 cut(s)	368
BstX2I	RGATCY	2 cut(s)	1536, 1639
BstYI	RGATCY	2 cut(s)	1536, 1639
BstZ17I	GTATAC	1 cut(s)	1764
BstZI	CGGCCG	1 cut(s)	482
BsuRI	GGCC	6 cut(s)	200, 206, 389, 484, 1578, 1893
BtrI	CACGTC	1 cut(s)	424
BtsIMutI	CAGTG	1 cut(s)	193
BveI	ACCTGC	2 cut(s)	506, 868
Cac8I	GCNNGC	1 cut(s)	961
CfoI	GCGC	2 cut(s)	378, 413
Cfr10I	RCCGGY	1 cut(s)	480
Cfr13I	GGNCC	4 cut(s)	198, 199, 205, 388
CseI	GACGC	2 cut(s)	296, 374
Csp6I	GTAC	1 cut(s)	478
CviAII	CATG	5 cut(s)	787, 1364, 1468, 1679, 1767
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	3 cut(s)	986, 1077, 1845
DinI	GGCGCC	1 cut(s)	412
DpnI	GATC	5 cut(s)	1256, 1466, 1538, 1602, 1641
DpnII	GATC	5 cut(s)	1254, 1464, 1536, 1600, 1639
DrdI	GACNNNNNNGTC	1 cut(s)	1794
DseDI	GACNNNNNNGTC	1 cut(s)	1794
EaeI	YGGCCR	1 cut(s)	482
EagI	CGGCCG	1 cut(s)	482
Eam1104I	CTCTTC	4 cut(s)	269, 458, 1209, 1512
EarI	CTCTTC	4 cut(s)	269, 458, 1209, 1512
EclXI	CGGCCG	1 cut(s)	482
Eco147I	AGGCCT	1 cut(s)	1578
Eco24I	GRGCYC	2 cut(s)	126, 202
Eco32I	GATATC	1 cut(s)	1887
Eco52I	CGGCCG	1 cut(s)	482
Eco88I	CYCGRG	1 cut(s)	18
Eco91I	GGTNACC	2 cut(s)	1447, 1916
EcoO109I	RGGNCCY	1 cut(s)	388
EcoO65I	GGTNACC	2 cut(s)	1447, 1916
EcoRII	CCWGG	3 cut(s)	36, 201, 1835
EcoRV	GATATC	1 cut(s)	1887
EcoT22I	ATGCAT	1 cut(s)	1369
EcoT38I	GRGCYC	2 cut(s)	126, 202
EgeI	GGCGCC	1 cut(s)	412
EheI	GGCGCC	1 cut(s)	412
Esp3I	CGTCTC	1 cut(s)	543
FaeI	CATG	5 cut(s)	790, 1367, 1471, 1682, 1770
FatI	CATG	5 cut(s)	786, 1363, 1467, 1678, 1766
FauI	CCCGC	2 cut(s)	84, 952
FbaI	TGATCA	2 cut(s)	1254, 1464
FblI	GTMKAC	1 cut(s)	1763
Fnu4HI	GCNGC	3 cut(s)	379, 382, 444
FriOI	GRGCYC	2 cut(s)	126, 202
Fsp4HI	GCNGC	3 cut(s)	379, 382, 444
FspBI	CTAG	4 cut(s)	158, 587, 1388, 1545
GlaI	GCGC	2 cut(s)	377, 412
GluI	GCNGC	3 cut(s)	379, 382, 444
GsaI	CCCAGC	2 cut(s)	451, 857
GsuI	CTGGAG	1 cut(s)	133
HaeII	RGCGCY	1 cut(s)	414
HaeIII	GGCC	6 cut(s)	200, 206, 389, 484, 1578, 1893
HapII	CCGG	7 cut(s)	359, 475, 481, 606, 914, 1754, 1890
HgaI	GACGC	2 cut(s)	296, 374
HhaI	GCGC	2 cut(s)	378, 413
Hin1I	GRCGYC	3 cut(s)	288, 366, 411
Hin1II	CATG	5 cut(s)	790, 1367, 1471, 1682, 1770
Hin6I	GCGC	2 cut(s)	376, 411
HinP1I	GCGC	2 cut(s)	376, 411
HinfI	GANTC	4 cut(s)	323, 487, 533, 1073
HpaII	CCGG	7 cut(s)	359, 475, 481, 606, 914, 1754, 1890
HphI	GGTGA	6 cut(s)	238, 487, 1162, 1312, 1459, 1546
Hpy166II	GTNNAC	2 cut(s)	421, 1764
Hpy188I	TCNGA	4 cut(s)	322, 428, 1380, 1464
Hpy188III	TCNNGA	4 cut(s)	20, 150, 1493, 1785
Hpy8I	GTNNAC	2 cut(s)	421, 1764
Hpy99I	CGWCG	5 cut(s)	290, 368, 428, 668, 1639
HpyAV	CCTTC	6 cut(s)	196, 742, 1163, 1204, 1519, 1550
HpyCH4III	ACNGT	1 cut(s)	598
HpyCH4IV	ACGT	5 cut(s)	423, 821, 926, 1031, 1040
HpyCH4V	TGCA	9 cut(s)	384, 501, 551, 877, 1269, 1367, 1794, 1865, 1899
HpyF3I	CTNAG	3 cut(s)	986, 1077, 1845
HpySE526I	ACGT	5 cut(s)	423, 821, 926, 1031, 1040
Hsp92I	GRCGYC	3 cut(s)	288, 366, 411
Hsp92II	CATG	5 cut(s)	790, 1367, 1471, 1682, 1770
HspAI	GCGC	2 cut(s)	376, 411
KasI	GGCGCC	1 cut(s)	410
KpnI	GGTACC	1 cut(s)	481
Ksp22I	TGATCA	2 cut(s)	1254, 1464
Kzo9I	GATC	5 cut(s)	1254, 1464, 1536, 1600, 1639
LguI	GCTCTTC	1 cut(s)	458
LmnI	GCTCC	7 cut(s)	90, 121, 152, 477, 956, 1231, 1507
Lsp1109I	GCAGC	1 cut(s)	368
LweI	GCATC	6 cut(s)	565, 649, 686, 1092, 1463, 1852
MaeI	CTAG	4 cut(s)	158, 587, 1388, 1545
MaeII	ACGT	5 cut(s)	423, 821, 926, 1031, 1040
MalI	GATC	5 cut(s)	1256, 1466, 1538, 1602, 1641
MbiI	CCGCTC	2 cut(s)	147, 959
MboI	GATC	5 cut(s)	1254, 1464, 1536, 1600, 1639
MflI	RGATCY	2 cut(s)	1536, 1639
MhlI	GDGCHC	2 cut(s)	126, 202
MluCI	AATT	5 cut(s)	278, 308, 904, 1569, 1674
Mly113I	GGCGCC	1 cut(s)	411
MlyI	GAGTC	1 cut(s)	527
MmeI	TCCRAC	2 cut(s)	406, 1065
Mph1103I	ATGCAT	1 cut(s)	1369
MseI	TTAA	7 cut(s)	59, 96, 600, 615, 1047, 1479, 1830
MslI	CAYNNNNRTG	1 cut(s)	551
MspA1I	CMGCKG	1 cut(s)	381
MspI	CCGG	7 cut(s)	359, 475, 481, 606, 914, 1754, 1890
MspR9I	CCNGG	4 cut(s)	38, 203, 359, 1837
MvaI	CCWGG	3 cut(s)	38, 203, 1837
MvnI	CGCG	1 cut(s)	376
NarI	GGCGCC	1 cut(s)	411
NciI	CCSGG	1 cut(s)	359
NdeII	GATC	5 cut(s)	1254, 1464, 1536, 1600, 1639
NlaIII	CATG	5 cut(s)	790, 1367, 1471, 1682, 1770
NlaIV	GGNNCC	5 cut(s)	123, 200, 412, 479, 1017
NmuCI	GTSAC	6 cut(s)	530, 1027, 1237, 1447, 1552, 1916
NsiI	ATGCAT	1 cut(s)	1369
NspI	RCATGY	1 cut(s)	1770
PaeR7I	CTCGAG	1 cut(s)	18
PaqCI	CACCTGC	2 cut(s)	506, 868
PceI	AGGCCT	1 cut(s)	1578
PciI	ACATGT	1 cut(s)	1766
PciSI	GCTCTTC	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	1 cut(s)	1037
PfeI	GAWTC	3 cut(s)	323, 487, 1073
PflMI	CCANNNNNTGG	1 cut(s)	37
PfoI	TCCNGGA	1 cut(s)	36
PkrI	GCNGC	3 cut(s)	380, 383, 445
PleI	GAGTC	1 cut(s)	527
PluTI	GGCGCC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	527
Ppu21I	YACGTR	2 cut(s)	822, 1032
PscI	ACATGT	1 cut(s)	1766
Psp6I	CCWGG	3 cut(s)	36, 201, 1835
PspEI	GGTNACC	2 cut(s)	1447, 1916
PspFI	CCCAGC	2 cut(s)	447, 853
PspGI	CCWGG	3 cut(s)	36, 201, 1835
PspN4I	GGNNCC	5 cut(s)	123, 200, 412, 479, 1017
PspOMI	GGGCCC	1 cut(s)	198
PspPI	GGNCC	4 cut(s)	198, 199, 205, 388
PsuI	RGATCY	2 cut(s)	1536, 1639
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
RseI	CAYNNNNRTG	1 cut(s)	551
SapI	GCTCTTC	1 cut(s)	458
SaqAI	TTAA	7 cut(s)	59, 96, 600, 615, 1047, 1479, 1830
SatI	GCNGC	3 cut(s)	379, 382, 444
Sau3AI	GATC	5 cut(s)	1254, 1464, 1536, 1600, 1639
Sau96I	GGNCC	4 cut(s)	198, 199, 205, 388
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	4 cut(s)	38, 203, 359, 1837
SduI	GDGCHC	2 cut(s)	126, 202
SfaNI	GCATC	6 cut(s)	565, 649, 686, 1092, 1463, 1852
SfoI	GGCGCC	1 cut(s)	412
Sfr274I	CTCGAG	1 cut(s)	18
SlaI	CTCGAG	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	551
SmlI	CTYRAG	2 cut(s)	18, 1094
SmoI	CTYRAG	2 cut(s)	18, 1094
Sse9I	AATT	5 cut(s)	278, 308, 904, 1569, 1674
SseBI	AGGCCT	1 cut(s)	1578
SsiI	CCGC	8 cut(s)	77, 145, 343, 374, 379, 444, 872, 959
SspDI	GGCGCC	1 cut(s)	410
SspI	AATATT	2 cut(s)	829, 1774
SspMI	CTAG	4 cut(s)	158, 587, 1388, 1545
StuI	AGGCCT	1 cut(s)	1578
StyD4I	CCNGG	4 cut(s)	36, 201, 357, 1835
TaaI	ACNGT	1 cut(s)	598
TaiI	ACGT	5 cut(s)	426, 824, 929, 1034, 1043
TaqI	TCGA	3 cut(s)	19, 396, 666
TasI	AATT	5 cut(s)	278, 308, 904, 1569, 1674
TauI	GCSGC	2 cut(s)	381, 446
TfiI	GAWTC	3 cut(s)	323, 487, 1073
Tru1I	TTAA	7 cut(s)	59, 96, 600, 615, 1047, 1479, 1830
Tru9I	TTAA	7 cut(s)	59, 96, 600, 615, 1047, 1479, 1830
TscAI	CASTG	1 cut(s)	200
TseFI	GTSAC	6 cut(s)	530, 1027, 1237, 1447, 1552, 1916
TseI	GCWGC	1 cut(s)	381
Tsp45I	GTSAC	6 cut(s)	530, 1027, 1237, 1447, 1552, 1916
TspGWI	ACGGA	5 cut(s)	134, 1275, 1408, 1652, 1921
TspRI	CASTG	1 cut(s)	200
Van91I	CCANNNNNTGG	1 cut(s)	37
XapI	RAATTY	1 cut(s)	278
XceI	RCATGY	1 cut(s)	1770
XhoI	CTCGAG	1 cut(s)	18
XmiI	GTMKAC	1 cut(s)	1763
XspI	CTAG	4 cut(s)	158, 587, 1388, 1545
Zsp2I	ATGCAT	1 cut(s)	1369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.