Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012733

Physical Location & Seq

Genomic Coordinates Reverse (-)

7642117 .. 7643739

Gene Structure 1623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G17560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAAAGGCGGCGAATCCAAAGCTGAAGCAACGAGCACTGATCAGAGACTCAAAACCAGAGGTAGAAAGGCTGGGAAGAAGACGAAGAAGGATCCAAATCAACCTAAGAGACCTCCAAGTGCTTTCTTCGTCTTCCTTGAGGATTTCCGAAAAGAGTTTAACCTAGCGAATCCTAATAACAAATCCGTCGCTACTGTTGGTAAGGCTGCTGGAGCTAGATGGAAGGCAATGACTGATGAAGATAAAGCTCCTTACGTCGCTAAGGCTGAGAGCAGAAAGACTGAATATATTAAGAATGTGCAACAGTACAACTTGAAACTGGCTAGTGGAACCAATAGAGAAGAGGATGACTCTGACAAATCCAAGTCTGAAGTTGATGAAGCAGTAAGCGAAGAGGAGGCAGAAGACGACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006325 GO:0006333 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030527 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

138

Amino Acids

15.42

Weight (kDa)

7.8

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box_2	PF09011	32 - 104	4e-11	HMG-box domain
HMG_box	PF00505	35 - 104	6.5e-21	HMG (high mobility group) box
HMG_WDHD1	PF24815	38 - 86	2.4e-09	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17560 AT2G17560 AT2G17560 AT4G35570 AT4G35570
fragaria_vesca	FvH4_1g10340
malus_domestica	MD02G1116500.v1.1 MD02G1116600.v1.1 MD15G1231500.v1.1 MD15G1231700.v1.1
prunus_persica	Prupe.7G182700_v2.0.a1 Prupe.7G182800_v2.0.a1
pyrus_communis	pycom02g09050
rosa_chinensis	RchiOBHm_Chr2g0097191
rosa_multiflora	Rmu_sc0001182.1_g000011
rosa_roxburghii	Rroxscaffold_2G00144890
rosa_rugosa	Rorug02G0065500
rosa_wichuraiana	Rw2G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	2 cut(s)	86, 99
AcuI	CTGAAG	2 cut(s)	45, 390
AfaI	GTAC	1 cut(s)	308
AgsI	TTSAA	1 cut(s)	316
AluBI	AGCT	3 cut(s)	23, 215, 248
AluI	AGCT	3 cut(s)	23, 215, 248
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	2 cut(s)	40, 103
AlwI	GGATC	2 cut(s)	86, 99
ApeKI	GCWGC	1 cut(s)	206
BamHI	GGATCC	1 cut(s)	91
BbsI	GAAGAC	3 cut(s)	86, 124, 411
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	1 cut(s)	213
BclI	TGATCA	1 cut(s)	40
BcoDI	GTCTC	2 cut(s)	40, 103
BfaI	CTAG	3 cut(s)	164, 216, 324
BisI	GCNGC	2 cut(s)	10, 207
BlsI	GCNGC	2 cut(s)	11, 208
BmiI	GGNNCC	2 cut(s)	93, 331
BpiI	GAAGAC	3 cut(s)	86, 124, 411
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
BpmI	CTGGAG	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	158
BsaBI	GATNNNNATC	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	324
Bse3DI	GCAATG	1 cut(s)	234
Bse8I	GATNNNNATC	1 cut(s)	96
BseGI	GGATG	1 cut(s)	352
BseJI	GATNNNNATC	1 cut(s)	96
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	324
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	1 cut(s)	193
BseYI	CCCAGC	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	38
BsmAI	GTCTC	2 cut(s)	40, 103
Bso31I	GGTCTC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	40, 91
BspACI	CCGC	1 cut(s)	9
BspCNI	CTCAG	1 cut(s)	259
BspLI	GGNNCC	2 cut(s)	93, 331
BspPI	GGATC	2 cut(s)	86, 99
BspTNI	GGTCTC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	324
BssMI	GATC	2 cut(s)	40, 91
Bst4CI	ACNGT	2 cut(s)	196, 306
Bst6I	CTCTTC	2 cut(s)	336, 387
BstDEI	CTNAG	3 cut(s)	105, 261, 267
BstF5I	GGATG	1 cut(s)	352
BstKTI	GATC	2 cut(s)	43, 94
BstMAI	GTCTC	2 cut(s)	40, 103
BstMBI	GATC	2 cut(s)	40, 91
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	193
BstV2I	GAAGAC	3 cut(s)	86, 124, 411
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	307
CviJI	RGCY	7 cut(s)	23, 71, 206, 215, 248, 266, 323
CviKI_1	RGCY	7 cut(s)	23, 71, 206, 215, 248, 266, 323
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	3 cut(s)	105, 261, 267
DpnI	GATC	2 cut(s)	42, 93
DpnII	GATC	2 cut(s)	40, 91
Eam1104I	CTCTTC	2 cut(s)	336, 387
EarI	CTCTTC	2 cut(s)	336, 387
Eco31I	GGTCTC	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	45, 390
FaiI	YATR	1 cut(s)	288
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	2 cut(s)	10, 207
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	2 cut(s)	10, 207
FspBI	CTAG	3 cut(s)	164, 216, 324
GluI	GCNGC	2 cut(s)	10, 207
GsaI	CCCAGC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	231
HinfI	GANTC	4 cut(s)	14, 48, 169, 350
Hpy188I	TCNGA	4 cut(s)	45, 149, 355, 370
Hpy99I	CGWCG	3 cut(s)	191, 260, 413
HpyAV	CCTTC	2 cut(s)	82, 217
HpyCH4III	ACNGT	2 cut(s)	196, 306
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	1 cut(s)	301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	3 cut(s)	105, 261, 267
HpySE526I	ACGT	1 cut(s)	255
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	40, 91
LmnI	GCTCC	2 cut(s)	212, 253
LpnPI	CCDG	4 cut(s)	57, 70, 195, 305
Lsp1109I	GCAGC	1 cut(s)	193
MaeI	CTAG	3 cut(s)	164, 216, 324
MaeII	ACGT	1 cut(s)	255
MalI	GATC	2 cut(s)	42, 93
MboI	GATC	2 cut(s)	40, 91
MboII	GAAGA	9 cut(s)	88, 91, 97, 118, 124, 251, 353, 404, 416
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	38
MlyI	GAGTC	2 cut(s)	42, 344
MnlI	CCTC	6 cut(s)	53, 123, 133, 337, 388, 391
MseI	TTAA	2 cut(s)	159, 291
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	2 cut(s)	40, 91
NlaIV	GGNNCC	2 cut(s)	93, 331
PfeI	GAWTC	2 cut(s)	14, 169
PkrI	GCNGC	2 cut(s)	11, 208
PleI	GAGTC	2 cut(s)	42, 344
PpsI	GAGTC	2 cut(s)	42, 344
PspFI	CCCAGC	1 cut(s)	71
PspN4I	GGNNCC	2 cut(s)	93, 331
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SaqAI	TTAA	2 cut(s)	159, 291
SatI	GCNGC	2 cut(s)	10, 207
Sau3AI	GATC	2 cut(s)	40, 91
SchI	GAGTC	2 cut(s)	42, 344
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	8 cut(s)	25, 64, 106, 115, 165, 217, 250, 258
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	3 cut(s)	164, 216, 324
TaaI	ACNGT	2 cut(s)	196, 306
TaiI	ACGT	1 cut(s)	258
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	1 cut(s)	12
TfiI	GAWTC	2 cut(s)	14, 169
Tru1I	TTAA	2 cut(s)	159, 291
Tru9I	TTAA	2 cut(s)	159, 291
TscAI	CASTG	1 cut(s)	43
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	3 cut(s)	17, 252, 393
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	1 cut(s)	43
XspI	CTAG	3 cut(s)	164, 216, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.