Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0012733

Physical Location & Seq

Genomic Coordinates Reverse (-)

9507813 .. 9509703

Gene Structure 1891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1116600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCAAAGTGAGCTTCCGGTTTTGTTGAAGACCAAAAGCGCTGGCGCGAGCAAGAAGGCAGCGAAGGATCCGAACAAGCCTAAGAGGCCTGCAAGCGCCTTCTTCGTTTTCATGGAGGATTTCAGAGTGAAATACAAGAAGGATCATCCTAATAACAAATCCGTCGCCGCTGTCGGTAAAGCTGGTGGTGATAAATGGAAATCGCTTTCAGAGGCTGAGAAAGCTCCCTACGTTGCCAAGGCAGAGAAAAGGAAGACCGAGTACACCAAGACCATGAATGCGTATAACAAGCGCATAGCTGAGGGAGGCAATGGAGCGGAGGACGAAGAGTCTGATAAGTCCAAGTCCGAGGTGCAAAACGAAGACGAAGATGATGACGAGAGCGGAGAGGAAGAAGATGATGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

137

Amino Acids

15.09

Weight (kDa)

5.16

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box_2	PF09011	24 - 96	5.7e-14	HMG-box domain
HMG_box	PF00505	27 - 96	2.8e-22	HMG (high mobility group) box
HMG_WDHD1	PF24815	30 - 78	5.1e-09	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17560 AT2G17560 AT2G17560 AT4G35570 AT4G35570
fragaria_vesca	FvH4_1g10340
malus_domestica	MD02G1116500.v1.1 MD02G1116600.v1.1 MD15G1231500.v1.1 MD15G1231700.v1.1
prunus_persica	Prupe.7G182700_v2.0.a1 Prupe.7G182800_v2.0.a1
pyrus_communis	pycom02g09050
rosa_chinensis	RchiOBHm_Chr2g0097191
rosa_multiflora	Rmu_sc0001182.1_g000011
rosa_roxburghii	Rroxscaffold_2G00144890
rosa_rugosa	Rorug02G0065500
rosa_wichuraiana	Rw2G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	317, 384
AccII	CGCG	1 cut(s)	47
AciI	CCGC	3 cut(s)	168, 317, 384
AclWI	GGATC	3 cut(s)	62, 75, 150
AfaI	GTAC	1 cut(s)	263
AfeI	AGCGCT	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	28
AhdI	GACNNNNNGTC	1 cut(s)	328
AluBI	AGCT	4 cut(s)	13, 182, 224, 299
AluI	AGCT	4 cut(s)	13, 182, 224, 299
AlwI	GGATC	3 cut(s)	62, 75, 150
AlwNI	CAGNNNCTG	1 cut(s)	215
Aor51HI	AGCGCT	1 cut(s)	40
AoxI	GGCC	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	59
AspLEI	GCGC	4 cut(s)	41, 47, 98, 294
AsuHPI	GGTGA	1 cut(s)	200
BamHI	GGATCC	1 cut(s)	67
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
BbsI	GAAGAC	3 cut(s)	35, 260, 369
BbvCI	CCTCAGC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	71
BfoI	RGCGCY	2 cut(s)	42, 99
BglI	GCCNNNNNGGC	1 cut(s)	85
BisI	GCNGC	2 cut(s)	60, 168
BlsI	GCNGC	2 cut(s)	61, 169
BmeRI	GACNNNNNGTC	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	69
BpiI	GAAGAC	3 cut(s)	35, 260, 369
Bpu10I	CCTNAGC	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	237, 348
BsaWI	WCCGGW	1 cut(s)	16
Bse3DI	GCAATG	1 cut(s)	316
BseDI	CCNNGG	2 cut(s)	237, 348
BseGI	GGATG	1 cut(s)	145
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	2 cut(s)	207, 291
BseXI	GCAGC	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	17
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	88
Bsp143I	GATC	2 cut(s)	67, 142
BspACI	CCGC	3 cut(s)	168, 317, 384
BspANI	GGCC	1 cut(s)	88
BspCNI	CTCAG	2 cut(s)	208, 292
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	3 cut(s)	62, 75, 150
BsrBI	CCGCTC	2 cut(s)	317, 384
BsrDI	GCAATG	1 cut(s)	316
BssECI	CCNNGG	2 cut(s)	237, 348
BssMI	GATC	2 cut(s)	67, 142
BssT1I	CCWWGG	1 cut(s)	237
Bst6I	CTCTTC	1 cut(s)	321
BstC8I	GCNNGC	4 cut(s)	43, 49, 90, 94
BstDEI	CTNAG	3 cut(s)	81, 216, 300
BstF5I	GGATG	1 cut(s)	145
BstFNI	CGCG	1 cut(s)	47
BstH2I	RGCGCY	2 cut(s)	42, 99
BstHHI	GCGC	4 cut(s)	41, 47, 98, 294
BstKTI	GATC	2 cut(s)	70, 145
BstMBI	GATC	2 cut(s)	67, 142
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 85, 221
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	3 cut(s)	35, 260, 369
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	145
Cac8I	GCNNGC	4 cut(s)	43, 49, 90, 94
CaiI	CAGNNNCTG	1 cut(s)	215
CfoI	GCGC	4 cut(s)	41, 47, 98, 294
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	2 cut(s)	112, 274
CviJI	RGCY	7 cut(s)	13, 79, 88, 182, 215, 224, 299
CviKI_1	RGCY	7 cut(s)	13, 79, 88, 182, 215, 224, 299
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	3 cut(s)	81, 216, 300
DpnI	GATC	2 cut(s)	69, 144
DpnII	GATC	2 cut(s)	67, 142
DriI	GACNNNNNGTC	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	321
Eam1105I	GACNNNNNGTC	1 cut(s)	328
EarI	CTCTTC	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	237
Eco147I	AGGCCT	1 cut(s)	88
Eco47III	AGCGCT	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	2 cut(s)	115, 277
FaiI	YATR	4 cut(s)	113, 275, 285, 296
FatI	CATG	2 cut(s)	111, 273
Fnu4HI	GCNGC	2 cut(s)	60, 168
FokI	GGATG	1 cut(s)	132
Fsp4HI	GCNGC	2 cut(s)	60, 168
GlaI	GCGC	4 cut(s)	40, 46, 97, 293
GluI	GCNGC	2 cut(s)	60, 168
HaeII	RGCGCY	2 cut(s)	42, 99
HaeIII	GGCC	1 cut(s)	88
HapII	CCGG	1 cut(s)	17
HhaI	GCGC	4 cut(s)	41, 47, 98, 294
Hin1II	CATG	2 cut(s)	115, 277
Hin6I	GCGC	4 cut(s)	39, 45, 96, 292
HinP1I	GCGC	4 cut(s)	39, 45, 96, 292
HinfI	GANTC	1 cut(s)	329
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	264
Hpy188I	TCNGA	5 cut(s)	72, 125, 211, 334, 349
Hpy8I	GTNNAC	1 cut(s)	264
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	4 cut(s)	49, 58, 109, 133
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	3 cut(s)	4, 92, 355
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 85, 221
HpyF3I	CTNAG	3 cut(s)	81, 216, 300
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	115, 277
HspAI	GCGC	4 cut(s)	39, 45, 96, 292
Kzo9I	GATC	2 cut(s)	67, 142
LmnI	GCTCC	2 cut(s)	229, 314
LpnPI	CCDG	4 cut(s)	27, 30, 102, 168
Lsp1109I	GCAGC	1 cut(s)	71
MaeII	ACGT	1 cut(s)	231
MalI	GATC	2 cut(s)	69, 144
MbiI	CCGCTC	2 cut(s)	317, 384
MboI	GATC	2 cut(s)	67, 142
MboII	GAAGA	8 cut(s)	40, 94, 265, 338, 374, 380, 404, 407
MflI	RGATCY	1 cut(s)	67
MlyI	GAGTC	1 cut(s)	338
MnlI	CCTC	8 cut(s)	78, 109, 205, 295, 299, 313, 343, 382
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	1 cut(s)	17
Mva1269I	GAATGC	1 cut(s)	283
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	3 cut(s)	10, 85, 221
NdeII	GATC	2 cut(s)	67, 142
NlaIII	CATG	2 cut(s)	115, 277
NlaIV	GGNNCC	1 cut(s)	69
PceI	AGGCCT	1 cut(s)	88
PctI	GAATGC	1 cut(s)	283
PkrI	GCNGC	2 cut(s)	61, 169
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	69
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SatI	GCNGC	2 cut(s)	60, 168
Sau3AI	GATC	2 cut(s)	67, 142
SchI	GAGTC	1 cut(s)	338
SetI	ASST	6 cut(s)	15, 184, 226, 234, 301, 354
SseBI	AGGCCT	1 cut(s)	88
SsiI	CCGC	3 cut(s)	168, 317, 384
StuI	AGGCCT	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	237
TaiI	ACGT	1 cut(s)	234
TaqII	GACCGA	1 cut(s)	272
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	1 cut(s)	170
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	2 cut(s)	100, 290
TspGWI	ACGGA	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.