FvH4_1g10340

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012733
Physical Location & Seq
Reverse (-)
5637873 .. 5639611
1739 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10340.t1

Sequence Viewer

Length: 450 bp
ATGAAAGGTGGGAAATCCAGAGCCGCGGCGCCGAAGCGGTCCGATACCAAGTTAAAGACGAAAAGCGCAGGGGCGAGCAAGGCGGCGAAGAAGGCTGGGAAGGATCCGAACAAGCCAAAGAGGCCTGCCAGTGCCTTCTTCGTTTTCATGGAGGAGTTTAGGGAGAAGTACAAGAAGGAGCATCCCAACAACAAATCGGTCGCCGCTGTTGGTAAAGCTGGTGGTGAGAAATGGAAATCGTTGTCTGATGCTGAGAAAGCACCTTACCAGGCTAAGGCTGAGAAGAGGAAGGTTGAATACAACAAGAACATGGATGTTTACAACAAGAAACAAGCTGATGGAGATAATGGAGTTGAGGAAGAGGAGTCTGACAAGTCCAAGTCAGAGGTGAATGATGAGGATGAGGATGATGATGAGAGCGCTGGCGAGGATGAGGACGATGATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 ko04140 ko04217 map03410 map04140 map04217
Pfam Domains
Protein Families
HMG_box

Protein Analysis

150

Amino Acids

16.48

Weight (kDa)

5.72

Isoelectric Point (pI)

42.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMG_box_2 PF09011 36 - 108 6.1e-15 HMG-box domain
HMG_box PF00505 39 - 108 7.2e-24 HMG (high mobility group) box
HMG_WDHD1 PF24815 42 - 92 5.8e-11 WDHD1 HMG box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012733)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17560 AT2G17560 AT2G17560 AT4G35570 AT4G35570
fragaria_vesca FvH4_1g10340
malus_domestica MD02G1116500.v1.1 MD02G1116600.v1.1 MD15G1231500.v1.1 MD15G1231700.v1.1
prunus_persica Prupe.7G182700_v2.0.a1 Prupe.7G182800_v2.0.a1
pyrus_communis pycom02g09050
rosa_chinensis RchiOBHm_Chr2g0097191
rosa_multiflora Rmu_sc0001182.1_g000011
rosa_roxburghii Rroxscaffold_2G00144890
rosa_rugosa Rorug02G0065500
rosa_wichuraiana Rw2G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 28
AccII CGCG 1 cut(s) 26
AciI CCGC 5 cut(s) 24, 26, 37, 83, 204
AclWI GGATC 2 cut(s) 98, 111
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 1 cut(s) 170
AfeI AGCGCT 1 cut(s) 421
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 1 cut(s) 296
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 2 cut(s) 218, 335
AluI AGCT 2 cut(s) 218, 335
AlwI GGATC 2 cut(s) 98, 111
Aor51HI AGCGCT 1 cut(s) 421
AoxI GGCC 1 cut(s) 122
AspLEI GCGC 3 cut(s) 31, 68, 422
AspS9I GGNCC 1 cut(s) 39
AsuHPI GGTGA 2 cut(s) 236, 400
AvaII GGWCC 1 cut(s) 39
BamHI GGATCC 1 cut(s) 103
BanI GGYRCC 1 cut(s) 28
BarI GAAGNNNNNNTAC 2 cut(s) 281, 313
BccI CCATC 1 cut(s) 332
BciT130I CCWGG 1 cut(s) 269
BfoI RGCGCY 2 cut(s) 32, 423
BglI GCCNNNNNGGC 1 cut(s) 121
BisI GCNGC 4 cut(s) 24, 27, 84, 204
BlsI GCNGC 4 cut(s) 25, 28, 85, 205
Bme1390I CCNGG 1 cut(s) 269
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 2 cut(s) 30, 105
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 2 cut(s) 190, 238
Bpu10I CCTNAGC 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 24
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 129
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 5 cut(s) 181, 319, 406, 412, 436
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 2 cut(s) 243, 270
BseNI ACTGG 1 cut(s) 129
BseRI GAGGAG 2 cut(s) 167, 377
BseYI CCCAGC 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 26
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 1 cut(s) 124
BshNI GGYRCC 1 cut(s) 28
BsiEI CGRYCG 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 274
BsnI GGCC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 5 cut(s) 24, 26, 37, 83, 204
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 2 cut(s) 244, 271
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 2 cut(s) 30, 105
BspPI GGATC 2 cut(s) 98, 111
BspT107I GGYRCC 1 cut(s) 28
BsrI ACTGG 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 1 cut(s) 103
BssNI GRCGYC 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 269
Bst6I CTCTTC 2 cut(s) 278, 354
BstACI GRCGYC 1 cut(s) 29
BstC8I GCNNGC 3 cut(s) 76, 126, 424
BstDEI CTNAG 3 cut(s) 252, 273, 279
BstDSI CCRYGG 1 cut(s) 24
BstF5I GGATG 5 cut(s) 181, 319, 406, 412, 436
BstFNI CGCG 1 cut(s) 26
BstH2I RGCGCY 2 cut(s) 32, 423
BstHHI GCGC 3 cut(s) 31, 68, 422
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 4 cut(s) 80, 92, 121, 257
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 267
BstUI CGCG 1 cut(s) 26
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BsuRI GGCC 1 cut(s) 124
BtgI CCRYGG 1 cut(s) 24
BtsCI GGATG 5 cut(s) 181, 319, 406, 412, 436
BtsIMutI CAGTG 1 cut(s) 136
Cac8I GCNNGC 3 cut(s) 76, 126, 424
CfoI GCGC 3 cut(s) 31, 68, 422
Cfr13I GGNCC 1 cut(s) 39
Cfr42I CCGCGG 1 cut(s) 27
CpoI CGGWCCG 1 cut(s) 39
Csp6I GTAC 1 cut(s) 169
CspI CGGWCCG 1 cut(s) 39
CviAII CATG 2 cut(s) 148, 310
CviJI RGCY 8 cut(s) 23, 95, 115, 124, 218, 272, 278, 335
CviKI_1 RGCY 8 cut(s) 23, 95, 115, 124, 218, 272, 278, 335
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 3 cut(s) 252, 273, 279
DinI GGCGCC 1 cut(s) 30
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eam1104I CTCTTC 2 cut(s) 278, 354
EarI CTCTTC 2 cut(s) 278, 354
Eco147I AGGCCT 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 39
Eco47III AGCGCT 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 267
EgeI GGCGCC 1 cut(s) 30
EheI GGCGCC 1 cut(s) 30
FaeI CATG 2 cut(s) 151, 313
FaiI YATR 2 cut(s) 149, 311
FatI CATG 2 cut(s) 147, 309
Fnu4HI GCNGC 4 cut(s) 24, 27, 84, 204
FokI GGATG 5 cut(s) 168, 326, 413, 419, 443
Fsp4HI GCNGC 4 cut(s) 24, 27, 84, 204
GlaI GCGC 3 cut(s) 30, 67, 421
GluI GCNGC 4 cut(s) 24, 27, 84, 204
GsaI CCCAGC 1 cut(s) 99
HaeII RGCGCY 2 cut(s) 32, 423
HaeIII GGCC 1 cut(s) 124
HhaI GCGC 3 cut(s) 31, 68, 422
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 2 cut(s) 151, 313
Hin6I GCGC 3 cut(s) 29, 66, 420
HinP1I GCGC 3 cut(s) 29, 66, 420
HinfI GANTC 1 cut(s) 365
HphI GGTGA 2 cut(s) 236, 400
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 5 cut(s) 43, 108, 247, 370, 385
Hpy188III TCNNGA 1 cut(s) 18
Hpy8I GTNNAC 1 cut(s) 319
HpyAV CCTTC 5 cut(s) 85, 94, 145, 169, 283
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 92, 121, 257
HpyF3I CTNAG 3 cut(s) 252, 273, 279
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 2 cut(s) 151, 313
HspAI GCGC 3 cut(s) 29, 66, 420
KasI GGCGCC 1 cut(s) 28
KspI CCGCGG 1 cut(s) 27
Kzo9I GATC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 9 cut(s) 31, 54, 81, 138, 142, 204, 254, 281, 408
LweI GCATC 2 cut(s) 190, 238
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 4 cut(s) 100, 130, 295, 371
MflI RGATCY 1 cut(s) 103
Mly113I GGCGCC 1 cut(s) 29
MlyI GAGTC 1 cut(s) 374
MseI TTAA 1 cut(s) 53
MspA1I CMGCKG 2 cut(s) 26, 206
MspR9I CCNGG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 269
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 4 cut(s) 80, 92, 121, 257
NarI GGCGCC 1 cut(s) 29
NdeII GATC 1 cut(s) 103
NlaIII CATG 2 cut(s) 151, 313
NlaIV GGNNCC 2 cut(s) 30, 105
PceI AGGCCT 1 cut(s) 124
PkrI GCNGC 4 cut(s) 25, 28, 85, 205
PleI GAGTC 1 cut(s) 373
PluTI GGCGCC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 267
PspFI CCCAGC 1 cut(s) 95
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 2 cut(s) 30, 105
PspPI GGNCC 1 cut(s) 39
PsuI RGATCY 1 cut(s) 103
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
Rsr2I CGGWCCG 1 cut(s) 39
RsrII CGGWCCG 1 cut(s) 39
SacII CCGCGG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 4 cut(s) 24, 27, 84, 204
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 1 cut(s) 39
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 1 cut(s) 269
SetI ASST 6 cut(s) 10, 220, 265, 294, 337, 390
SfaNI GCATC 2 cut(s) 190, 238
SfoI GGCGCC 1 cut(s) 30
Sfr303I CCGCGG 1 cut(s) 27
SgrBI CCGCGG 1 cut(s) 27
SinI GGWCC 1 cut(s) 39
SseBI AGGCCT 1 cut(s) 124
SsiI CCGC 5 cut(s) 24, 26, 37, 83, 204
SspDI GGCGCC 1 cut(s) 28
StuI AGGCCT 1 cut(s) 124
StyD4I CCNGG 1 cut(s) 267
TaqII GACCGA 1 cut(s) 187
TatI WGTACW 1 cut(s) 168
TauI GCSGC 4 cut(s) 26, 29, 86, 206
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TscAI CASTG 1 cut(s) 136
TspDTI ATGAA 2 cut(s) 17, 136
TspRI CASTG 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.