Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012733

Physical Location & Seq

Genomic Coordinates Forward (+)

17771936 .. 17773709

Gene Structure 1774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G182700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGGAAATCCAGAGCTGCTGCTCCTAAAAGAACCGAGACCAAGTTAAAGACCAAAAGTGCTGGAGCGAGTAAGAGGACATCGAAGAAGGCCGGAAAGGATCCAAACAAGCCAAAGAGACCTGCGAGCGCCTTCTTCGTTTTCATGGAGGATTTCAGGGAGAAGTACAAGAAGGAACATCCTAACAACAAATCTGTCGCTGCTGTCGGTAAGGCTGGTGGTGACAAATGGAAATCATTGTCAGATGCTGAGAAAGCTCCCTACGTAGCCAAGGCAGAGAAGAGGAAGACTGAATATAACAAGACCATGCAGGCCTACAACAAGAGTATTGCTGAGGGAGGCAATGGAGCAGAGGAGGAAGAATCTGATAAGTCCAAGTCTGAGGTGAATAACGAAGAAGAAGAAGATGATGAGAGTGCAGAGGATGAAGATGATGACGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

148

Amino Acids

16.28

Weight (kDa)

6.67

Isoelectric Point (pI)

48.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17560 AT2G17560 AT2G17560 AT4G35570 AT4G35570
fragaria_vesca	FvH4_1g10340
malus_domestica	MD02G1116500.v1.1 MD02G1116600.v1.1 MD15G1231500.v1.1 MD15G1231700.v1.1
prunus_persica	Prupe.7G182700_v2.0.a1 Prupe.7G182800_v2.0.a1
pyrus_communis	pycom02g09050
rosa_chinensis	RchiOBHm_Chr2g0097191
rosa_multiflora	Rmu_sc0001182.1_g000011
rosa_roxburghii	Rroxscaffold_2G00144890
rosa_rugosa	Rorug02G0065500
rosa_wichuraiana	Rw2G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	130
AclWI	GGATC	2 cut(s)	95, 108
AfaI	GTAC	1 cut(s)	167
AluBI	AGCT	2 cut(s)	17, 257
AluI	AGCT	2 cut(s)	17, 257
Alw26I	GTCTC	2 cut(s)	32, 112
AlwI	GGATC	2 cut(s)	95, 108
AlwNI	CAGNNNCTG	1 cut(s)	248
AoxI	GGCC	2 cut(s)	90, 312
ApeKI	GCWGC	3 cut(s)	17, 20, 200
AspLEI	GCGC	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	233, 397
BamHI	GGATCC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	293
BbvCI	CCTCAGC	1 cut(s)	333
BbvI	GCAGC	3 cut(s)	4, 7, 187
BcoDI	GTCTC	2 cut(s)	32, 112
BfoI	RGCGCY	1 cut(s)	132
BfuAI	ACCTGC	1 cut(s)	130
BisI	GCNGC	3 cut(s)	18, 21, 201
BlsI	GCNGC	3 cut(s)	19, 22, 202
BmiI	GGNNCC	1 cut(s)	102
BmsI	GCATC	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	84
Bpu10I	CCTNAGC	1 cut(s)	333
BsaAI	YACGTR	1 cut(s)	265
BsaI	GGTCTC	2 cut(s)	32, 112
BsaJI	CCNNGG	1 cut(s)	270
Bse3DI	GCAATG	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	2 cut(s)	178, 430
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	3 cut(s)	240, 324, 372
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	3 cut(s)	4, 7, 187
BsgI	GTGCAG	1 cut(s)	438
BshFI	GGCC	2 cut(s)	92, 314
BsiSI	CCGG	1 cut(s)	93
BsmAI	GTCTC	2 cut(s)	32, 112
BsnI	GGCC	2 cut(s)	92, 314
Bso31I	GGTCTC	2 cut(s)	32, 112
Bsp143I	GATC	1 cut(s)	100
BspANI	GGCC	2 cut(s)	92, 314
BspCNI	CTCAG	3 cut(s)	241, 325, 373
BspLI	GGNNCC	1 cut(s)	102
BspMI	ACCTGC	1 cut(s)	130
BspPI	GGATC	2 cut(s)	95, 108
BspTNI	GGTCTC	2 cut(s)	32, 112
BsrDI	GCAATG	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	270
Bst6I	CTCTTC	1 cut(s)	275
BstBAI	YACGTR	1 cut(s)	265
BstC8I	GCNNGC	2 cut(s)	127, 312
BstDEI	CTNAG	3 cut(s)	249, 333, 381
BstF5I	GGATG	2 cut(s)	178, 430
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	2 cut(s)	32, 112
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstSNI	TACGTA	1 cut(s)	265
BstV1I	GCAGC	3 cut(s)	4, 7, 187
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	92, 314
BtsCI	GGATG	2 cut(s)	178, 430
BveI	ACCTGC	1 cut(s)	130
Cac8I	GCNNGC	2 cut(s)	127, 312
CaiI	CAGNNNCTG	1 cut(s)	248
CfoI	GCGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	2 cut(s)	145, 307
CviJI	RGCY	7 cut(s)	17, 92, 112, 215, 257, 269, 314
CviKI_1	RGCY	7 cut(s)	17, 92, 112, 215, 257, 269, 314
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	3 cut(s)	249, 333, 381
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Eco105I	TACGTA	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	270
Eco147I	AGGCCT	1 cut(s)	314
Eco31I	GGTCTC	2 cut(s)	32, 112
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	2 cut(s)	148, 310
FaiI	YATR	3 cut(s)	146, 297, 308
FatI	CATG	2 cut(s)	144, 306
Fnu4HI	GCNGC	3 cut(s)	18, 21, 201
FokI	GGATG	2 cut(s)	165, 437
Fsp4HI	GCNGC	3 cut(s)	18, 21, 201
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	3 cut(s)	18, 21, 201
GsuI	CTGGAG	1 cut(s)	84
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	92, 314
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	148, 310
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HinfI	GANTC	1 cut(s)	362
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	233, 397
Hpy188I	TCNGA	3 cut(s)	244, 367, 382
Hpy188III	TCNNGA	1 cut(s)	12
HpyAV	CCTTC	3 cut(s)	82, 142, 166
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	2 cut(s)	310, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	3 cut(s)	249, 333, 381
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	148, 310
HspAI	GCGC	1 cut(s)	129
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	4 cut(s)	28, 65, 262, 347
LpnPI	CCDG	7 cut(s)	25, 48, 106, 135, 142, 201, 296
Lsp1109I	GCAGC	3 cut(s)	4, 7, 187
LweI	GCATC	1 cut(s)	235
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MflI	RGATCY	1 cut(s)	100
MnlI	CCTC	9 cut(s)	69, 142, 276, 328, 332, 346, 349, 376, 415
MseI	TTAA	1 cut(s)	47
MspI	CCGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	2 cut(s)	148, 310
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	221
PceI	AGGCCT	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	362
PkrI	GCNGC	3 cut(s)	19, 22, 202
Ppu21I	YACGTR	1 cut(s)	265
PspN4I	GGNNCC	1 cut(s)	102
PstNI	CAGNNNCTG	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	100
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SaqAI	TTAA	1 cut(s)	47
SatI	GCNGC	3 cut(s)	18, 21, 201
Sau3AI	GATC	1 cut(s)	100
SetI	ASST	5 cut(s)	19, 124, 259, 267, 387
SfaNI	GCATC	1 cut(s)	235
SnaBI	TACGTA	1 cut(s)	265
SseBI	AGGCCT	1 cut(s)	314
StuI	AGGCCT	1 cut(s)	314
StyI	CCWWGG	1 cut(s)	270
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	83
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	3 cut(s)	17, 20, 200
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	133, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.