Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012733

Physical Location & Seq

Genomic Coordinates Forward (+)

17775204 .. 17776818

Gene Structure 1615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G182800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGGTAAAGCCAGAGCAGCTGCTCCCAAACGAACCGATACGAAGTTGAAGAGTAAGAGTGCTGGAGCAAGCAAGAAGCCAGCGAAGAAAGCTGGAAAGGATCCAAACAAGCCTAAGAGGCCTGCTAGTGCTTTCTTTGTTTTCATGGAGGACTTCAGAGAGAAGTACAAGAAAGAGCATCCAAACAACAAATCGGTTGCCGCTGTTGGAAAAGCTGGAGGTGATAAATGGAAGTCGTTGTCAGAAGCTGAAAAGGCTCCCTATGTAGCCAAGGCAGAGAAGAGGAAGGTTGAATACAACAAGAACATTCAAGCCTACAACAAGAGATTAGCTGAGGGCCCAAATGGAGCTGATGAGGAAGAGTCTGACAAGTCCAAGTCTGAAGTTAATGATGATGATGAAGACGAGGACGAGAGCGGAGAGGTCAGAGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

146

Amino Acids

16.0

Weight (kDa)

9.46

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17560 AT2G17560 AT2G17560 AT4G35570 AT4G35570
fragaria_vesca	FvH4_1g10340
malus_domestica	MD02G1116500.v1.1 MD02G1116600.v1.1 MD15G1231500.v1.1 MD15G1231700.v1.1
prunus_persica	Prupe.7G182700_v2.0.a1 Prupe.7G182800_v2.0.a1
pyrus_communis	pycom02g09050
rosa_chinensis	RchiOBHm_Chr2g0097191
rosa_multiflora	Rmu_sc0001182.1_g000011
rosa_roxburghii	Rroxscaffold_2G00144890
rosa_rugosa	Rorug02G0065500
rosa_wichuraiana	Rw2G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	417
AciI	CCGC	2 cut(s)	201, 417
AclWI	GGATC	2 cut(s)	95, 108
AcuI	CTGAAG	2 cut(s)	139, 402
AfaI	GTAC	1 cut(s)	167
AgsI	TTSAA	3 cut(s)	49, 293, 311
AluBI	AGCT	6 cut(s)	20, 92, 215, 248, 332, 350
AluI	AGCT	6 cut(s)	20, 92, 215, 248, 332, 350
AlwI	GGATC	2 cut(s)	95, 108
AlwNI	CAGNNNCTG	1 cut(s)	248
AoxI	GGCC	2 cut(s)	119, 337
ApaI	GGGCCC	1 cut(s)	341
ApeKI	GCWGC	2 cut(s)	17, 20
AspS9I	GGNCC	2 cut(s)	337, 338
AsuHPI	GGTGA	1 cut(s)	233
BaeGI	GKGCMC	1 cut(s)	341
BamHI	GGATCC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	341
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
BbsI	GAAGAC	1 cut(s)	408
BbvCI	CCTCAGC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	7, 29
BfaI	CTAG	1 cut(s)	126
BglI	GCCNNNNNGGC	1 cut(s)	118
BisI	GCNGC	3 cut(s)	18, 21, 201
BlsI	GCNGC	3 cut(s)	19, 22, 202
BmgT120I	GGNCC	2 cut(s)	337, 338
BmiI	GGNNCC	3 cut(s)	102, 258, 339
BmsI	GCATC	1 cut(s)	187
BpiI	GAAGAC	1 cut(s)	408
BpmI	CTGGAG	2 cut(s)	84, 237
Bpu10I	CCTNAGC	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	324
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	7, 29
BshFI	GGCC	2 cut(s)	121, 339
BsnI	GGCC	2 cut(s)	121, 339
Bsp120I	GGGCCC	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	2 cut(s)	201, 417
BspANI	GGCC	2 cut(s)	121, 339
BspCNI	CTCAG	1 cut(s)	325
BspLI	GGNNCC	3 cut(s)	102, 258, 339
BspPI	GGATC	2 cut(s)	95, 108
BsrBI	CCGCTC	1 cut(s)	417
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	270
Bst6I	CTCTTC	3 cut(s)	44, 275, 354
BstC8I	GCNNGC	3 cut(s)	70, 81, 123
BstDEI	CTNAG	2 cut(s)	114, 333
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 89, 118, 254
BstSLI	GKGCMC	1 cut(s)	341
BstV1I	GCAGC	2 cut(s)	7, 29
BstV2I	GAAGAC	1 cut(s)	408
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	121, 339
BtsCI	GGATG	1 cut(s)	178
Cac8I	GCNNGC	3 cut(s)	70, 81, 123
CaiI	CAGNNNCTG	1 cut(s)	248
Cfr13I	GGNCC	2 cut(s)	337, 338
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	1 cut(s)	145
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	2 cut(s)	114, 333
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
Eam1104I	CTCTTC	3 cut(s)	44, 275, 354
EarI	CTCTTC	3 cut(s)	44, 275, 354
Eco130I	CCWWGG	1 cut(s)	270
Eco147I	AGGCCT	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	341
Eco57I	CTGAAG	2 cut(s)	139, 402
EcoO109I	RGGNCCY	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	1 cut(s)	148
FaiI	YATR	2 cut(s)	146, 264
FatI	CATG	1 cut(s)	144
Fnu4HI	GCNGC	3 cut(s)	18, 21, 201
FokI	GGATG	1 cut(s)	165
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	3 cut(s)	18, 21, 201
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	3 cut(s)	18, 21, 201
GsuI	CTGGAG	2 cut(s)	84, 237
HaeIII	GGCC	2 cut(s)	121, 339
Hin1II	CATG	1 cut(s)	148
HinfI	GANTC	1 cut(s)	362
HphI	GGTGA	1 cut(s)	233
Hpy188I	TCNGA	5 cut(s)	158, 244, 367, 382, 428
HpyAV	CCTTC	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 89, 118, 254
HpyF3I	CTNAG	2 cut(s)	114, 333
Hsp92II	CATG	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	4 cut(s)	28, 65, 262, 347
LpnPI	CCDG	6 cut(s)	25, 48, 78, 93, 135, 201
Lsp1109I	GCAGC	2 cut(s)	7, 29
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	126
MalI	GATC	1 cut(s)	102
MbiI	CCGCTC	1 cut(s)	417
MboI	GATC	1 cut(s)	100
MboII	GAAGA	5 cut(s)	61, 97, 292, 371, 413
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	341
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	9 cut(s)	111, 142, 212, 276, 328, 349, 400, 415, 422
MseI	TTAA	1 cut(s)	387
MspA1I	CMGCKG	2 cut(s)	20, 203
MwoI	GCNNNNNNNGC	4 cut(s)	17, 89, 118, 254
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	3 cut(s)	102, 258, 339
PceI	AGGCCT	1 cut(s)	121
PkrI	GCNGC	3 cut(s)	19, 22, 202
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PspN4I	GGNNCC	3 cut(s)	102, 258, 339
PspOMI	GGGCCC	1 cut(s)	337
PspPI	GGNCC	2 cut(s)	337, 338
PstNI	CAGNNNCTG	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	3 cut(s)	18, 21, 201
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	2 cut(s)	337, 338
SchI	GAGTC	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	9 cut(s)	22, 94, 217, 223, 250, 291, 334, 352, 426
SfaNI	GCATC	1 cut(s)	187
SseBI	AGGCCT	1 cut(s)	121
SsiI	CCGC	2 cut(s)	201, 417
SspMI	CTAG	1 cut(s)	126
StuI	AGGCCT	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	270
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	1 cut(s)	203
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TseI	GCWGC	2 cut(s)	17, 20
TspDTI	ATGAA	2 cut(s)	133, 414
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.