Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001182.1

Orthogroup ID

OG0012733

Physical Location & Seq

Genomic Coordinates Reverse (-)

44789 .. 45959

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001182.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atggagcgattagatctggatcgcgttttgtctttgtgttgtttgtggatgttgatttttgattttgtttgttttttgggtgaattttttgttaggttaaagaccaaaagcgctggggcgagcaagccagccaagaaggctgggaaagatcccaacaagccgaagaggcctgcgagtgccttcttcgttttcatggaggagttccgagagaagtacaagaaggaacaccccaacaacaaatctgtcgccgctgttggtaaagctggtggtgagaaatggaaatcgttgtctgatgctgagaaagcaccctaccaggccaaggcagagaagaggaaggttgaatacaacaagaacatggacgtttacaacaagaaacaagccaaggcagagaagaggaaggttgaatacaacaagaacatggacgtttacaacaagaaacaagctgaaggagacaatggagttgaggaagaggagtctgacaagtccaagtcagaagtgaacgatgaggatgaggacgatgatgagagtggtggcgaggatgaagatgatgatgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

185

Amino Acids

21.22

Weight (kDa)

5.29

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17560 AT2G17560 AT2G17560 AT4G35570 AT4G35570
fragaria_vesca	FvH4_1g10340
malus_domestica	MD02G1116500.v1.1 MD02G1116600.v1.1 MD15G1231500.v1.1 MD15G1231700.v1.1
prunus_persica	Prupe.7G182700_v2.0.a1 Prupe.7G182800_v2.0.a1
pyrus_communis	pycom02g09050
rosa_chinensis	RchiOBHm_Chr2g0097191
rosa_multiflora	Rmu_sc0001182.1_g000011
rosa_roxburghii	Rroxscaffold_2G00144890
rosa_rugosa	Rorug02G0065500
rosa_wichuraiana	Rw2G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	24
AciI	CCGC	1 cut(s)	249
AclWI	GGATC	2 cut(s)	27, 143
AcsI	RAATTY	1 cut(s)	83
AcuI	CTGAAG	1 cut(s)	465
AfaI	GTAC	1 cut(s)	215
AfeI	AGCGCT	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	2 cut(s)	341, 404
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	2 cut(s)	263, 443
AluI	AGCT	2 cut(s)	263, 443
Alw26I	GTCTC	1 cut(s)	444
AlwI	GGATC	2 cut(s)	27, 143
Aor51HI	AGCGCT	1 cut(s)	112
AoxI	GGCC	2 cut(s)	167, 315
ApoI	RAATTY	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	92, 281
BarI	GAAGNNNNNNTAC	4 cut(s)	326, 358, 389, 421
BciT130I	CCWGG	1 cut(s)	314
BcoDI	GTCTC	1 cut(s)	444
BfoI	RGCGCY	1 cut(s)	114
BglI	GCCNNNNNGGC	2 cut(s)	137, 166
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	1 cut(s)	314
BmrFI	CCNGG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	283
BsaBI	GATNNNNATC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	318, 381
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse8I	GATNNNNATC	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	318, 381
BseGI	GGATG	3 cut(s)	54, 514, 544
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMII	CTCAG	1 cut(s)	288
BseRI	GAGGAG	2 cut(s)	212, 485
BseYI	CCCAGC	2 cut(s)	113, 140
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	2 cut(s)	169, 317
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	444
BsnI	GGCC	2 cut(s)	169, 317
Bsp143I	GATC	3 cut(s)	13, 19, 148
BspACI	CCGC	1 cut(s)	249
BspANI	GGCC	2 cut(s)	169, 317
BspCNI	CTCAG	1 cut(s)	289
BspFNI	CGCG	1 cut(s)	24
BspPI	GGATC	2 cut(s)	27, 143
BssECI	CCNNGG	2 cut(s)	318, 381
BssMI	GATC	3 cut(s)	13, 19, 148
BssT1I	CCWWGG	2 cut(s)	318, 381
Bst2UI	CCWGG	1 cut(s)	314
Bst6I	CTCTTC	4 cut(s)	158, 323, 386, 462
BstC8I	GCNNGC	4 cut(s)	121, 125, 129, 171
BstDEI	CTNAG	1 cut(s)	297
BstF5I	GGATG	3 cut(s)	54, 514, 544
BstFNI	CGCG	1 cut(s)	24
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	3 cut(s)	16, 22, 151
BstMAI	GTCTC	1 cut(s)	444
BstMBI	GATC	3 cut(s)	13, 19, 148
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 166, 302
BstNI	CCWGG	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	312
BstUI	CGCG	1 cut(s)	24
BstX2I	RGATCY	2 cut(s)	13, 148
BstYI	RGATCY	2 cut(s)	13, 148
BsuRI	GGCC	2 cut(s)	169, 317
BtsCI	GGATG	3 cut(s)	54, 514, 544
Cac8I	GCNNGC	4 cut(s)	121, 125, 129, 171
CfoI	GCGC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	3 cut(s)	193, 355, 418
CviJI	RGCY	9 cut(s)	127, 131, 140, 160, 169, 263, 317, 380, 443
CviKI_1	RGCY	9 cut(s)	127, 131, 140, 160, 169, 263, 317, 380, 443
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	3 cut(s)	15, 21, 150
DpnII	GATC	3 cut(s)	13, 19, 148
Eam1104I	CTCTTC	4 cut(s)	158, 323, 386, 462
EarI	CTCTTC	4 cut(s)	158, 323, 386, 462
Eco130I	CCWWGG	2 cut(s)	318, 381
Eco147I	AGGCCT	1 cut(s)	169
Eco47III	AGCGCT	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	465
EcoRII	CCWGG	1 cut(s)	312
EcoT14I	CCWWGG	2 cut(s)	318, 381
ErhI	CCWWGG	2 cut(s)	318, 381
FaeI	CATG	3 cut(s)	196, 358, 421
FaiI	YATR	3 cut(s)	194, 356, 419
FatI	CATG	3 cut(s)	192, 354, 417
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	3 cut(s)	61, 521, 551
Fsp4HI	GCNGC	1 cut(s)	249
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	1 cut(s)	249
GsaI	CCCAGC	2 cut(s)	117, 144
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	169, 317
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	3 cut(s)	196, 358, 421
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HinfI	GANTC	1 cut(s)	473
HphI	GGTGA	2 cut(s)	92, 281
Hpy166II	GTNNAC	3 cut(s)	364, 427, 499
Hpy188I	TCNGA	4 cut(s)	206, 292, 478, 493
Hpy188III	TCNNGA	1 cut(s)	17
Hpy8I	GTNNAC	3 cut(s)	364, 427, 499
HpyAV	CCTTC	6 cut(s)	130, 190, 214, 328, 391, 440
HpyCH4IV	ACGT	2 cut(s)	360, 423
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 166, 302
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	2 cut(s)	360, 423
Hsp92II	CATG	3 cut(s)	196, 358, 421
HspAI	GCGC	1 cut(s)	111
Kzo9I	GATC	3 cut(s)	13, 19, 148
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	8 cut(s)	2, 99, 126, 141, 183, 249, 299, 326
LweI	GCATC	1 cut(s)	283
MaeII	ACGT	2 cut(s)	360, 423
MalI	GATC	3 cut(s)	15, 21, 150
MboI	GATC	3 cut(s)	13, 19, 148
MboII	GAAGA	6 cut(s)	175, 175, 340, 403, 479, 554
MflI	RGATCY	2 cut(s)	13, 148
MluCI	AATT	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	482
MnlI	CCTC	9 cut(s)	159, 190, 324, 387, 457, 463, 499, 505, 529
MseI	TTAA	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	251
MspR9I	CCNGG	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	314
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	3 cut(s)	137, 166, 302
NdeII	GATC	3 cut(s)	13, 19, 148
NlaIII	CATG	3 cut(s)	196, 358, 421
PceI	AGGCCT	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
Psp6I	CCWGG	1 cut(s)	312
PspFI	CCCAGC	2 cut(s)	113, 140
PspGI	CCWGG	1 cut(s)	312
PsuI	RGATCY	2 cut(s)	13, 148
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	3 cut(s)	13, 19, 148
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	314
SetI	ASST	7 cut(s)	98, 265, 339, 363, 402, 426, 445
SfaNI	GCATC	1 cut(s)	283
Sse9I	AATT	1 cut(s)	83
SseBI	AGGCCT	1 cut(s)	169
SsiI	CCGC	1 cut(s)	249
StuI	AGGCCT	1 cut(s)	169
StyD4I	CCNGG	1 cut(s)	312
StyI	CCWWGG	2 cut(s)	318, 381
TaiI	ACGT	2 cut(s)	363, 426
TasI	AATT	1 cut(s)	83
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	1 cut(s)	251
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TspDTI	ATGAA	2 cut(s)	181, 555
XapI	RAATTY	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.