AT2G17670

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015461
Physical Location & Seq
Forward (+)
7674319 .. 7676276
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17670.2

Sequence Viewer

Length: 1392 bp
ATGGGGAAAGTTCCGTCGTCGTTTCGTAGTATGCCGGCGAACTTATTGGTCAGAAAAACAACACCATCTCCTCCAGCGCCGCCGCGAGATTTTCGCAACAGAACCGCCGTGGGAGGAGATTCAGCCAAACTTCCCCAGAATACTCAAGCCCCTCGCGAGCCCTCCTTGAGGAATCCATTCAAGTCACCAAATCTCTCAGACGCTAAAAGCCTCTTCAATTCAATCGCCGCCACTTCACGAATCCCACTCGATCTCAAGTTCCACAACTCTGTTCTTCAATCATACGGTTCAATCGCCGTCGTCAACGATACGGTGAAACTCTTTCAGCATATTTTGAAATCGCAGCCTAATTTCAGGCCGGGACGTTCAACGTTCCTTATCTTGCTTTCACATGCTTGTAGAGCTCCTGATTCGTCGATTTCGAATGTTCATAGAGTTCTTAATCTCATGGTTAATAATGGTTTAGAGCCTGATCAAGTAACTACCGATATCGCGGTGAGGTCTCTTTGCGAAACGGGTCGGGTTGATGAAGCTAAGGATTTGATGAAGGAGCTCACTGAGAAACACTCTCCTCCGGATACATATACTTATAACTTTCTACTGAAGCATTTGTGCAAATGCAAAGATCTTCATGTTGTTTATGAGTTTGTTGATGAGATGAGAGATGATTTCGATGTTAAGCCGGATCTTGTTAGCTTCACTATCTTGATTGATAATGTTTGTAACTCTAAGAACTTGAGGGAGGCAATGTATCTAGTTAGTAAGTTAGGTAATGCTGGGTTTAAGCCGGATTGTTTCCTCTATAACACGATTATGAAAGGTTTTTGCACACTGAGTAAAGGGAGTGAGGCGGTTGGTGTGTATAAGAAAATGAAGGAAGAAGGTGTTGAGCCAGATCAGATTACCTACAATACTTTGATATTTGGACTGTCGAAAGCTGGTAGAGTTGAGGAAGCTAGGATGTATTTGAAAACTATGGTTGATGCGGGGTATGAGCCGGATACTGCTACTTACACATCACTGATGAATGGAATGTGTAGAAAAGGTGAGTCTTTAGGTGCGTTGAGTTTGTTAGAAGAAATGGAAGCAAGAGGGTGTGCTCCAAATGATTGTACTTATAATACTTTGCTTCATGGATTGTGTAAAGCAAGGTTGATGGATAAAGGGATGGAGTTATATGAAATGATGAAATCAAGTGGTGTAAAGCTTGAGAGTAATGGTTATGCTACACTTGTGAGGTCTCTGGTTAAAAGTGGCAAGGTCGCAGAGGCTTATGAAGTGTTTGATTATGCAGTTGATAGCAAGAGTTTGTCAGATGCTTCTGCGTACTCTACACTTGAAACTACCTTGAAATGGTTGAAAAAAGCTAAAGAACAAGGCTTGGTTCCATAA

Protein Analysis

463

Amino Acids

51.41

Weight (kDa)

8.47

Isoelectric Point (pI)

31.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 168 - 206 5.8e-09 PPR repeat family
PPR_2 PF13041 192 - 242 4.5e-11 PPR repeat family
PPR_3 PF13812 217 - 274 1.8e-06 Pentatricopeptide repeat domain
PPR_3 PF13812 252 - 307 3e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 263 - 312 1.1e-14 PPR repeat family
PPR_1 PF12854 295 - 326 1.2e-09 PPR repeat
PPR_2 PF13041 298 - 347 1.8e-15 PPR repeat family
PPR PF01535 301 - 330 1.2e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17670 AT2G17670
fragaria_vesca FvH4_1g10671
malus_domestica MD02G1120600.v1.1
prunus_persica Prupe.7G178400_v2.0.a1
rosa_laevigata RLG00000016739
rosa_multiflora Rmu_co8429607.1_g000001 Rmu_sc0000974.1_g000027 Rmu_sc0008442.1_g000010
rosa_roxburghii Rroxscaffold_6G00394240
rosa_rugosa Rorug02G0068500
rosa_samantha Rh2AG115200 Rh2BG118100 Rh2CG119700 Rh2DG119400
rosa_wichuraiana Rw2G009000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 591, 1119
AccII CGCG 3 cut(s) 85, 156, 494
AccIII TCCGGA 1 cut(s) 574
AciI CCGC 7 cut(s) 80, 83, 105, 228, 494, 851, 986
AclI AACGTT 1 cut(s) 371
AclWI GGATC 1 cut(s) 693
AcuI CTGAAG 1 cut(s) 623
AfaI GTAC 2 cut(s) 1114, 1328
AfiI CCNNNNNNNGG 2 cut(s) 168, 1353
AluBI AGCT 8 cut(s) 404, 533, 553, 696, 938, 956, 1207, 1367
AluI AGCT 8 cut(s) 404, 533, 553, 696, 938, 956, 1207, 1367
Alw21I GWGCWC 3 cut(s) 406, 555, 1102
Alw26I GTCTC 2 cut(s) 507, 1245
AlwI GGATC 1 cut(s) 693
Aor13HI TCCGGA 1 cut(s) 574
AoxI GGCC 1 cut(s) 356
ApeKI GCWGC 1 cut(s) 343
Asp700I GAANNNNTTC 1 cut(s) 176
AspLEI GCGC 1 cut(s) 79
AsuC2I CCSGG 1 cut(s) 360
AsuHPI GGTGA 4 cut(s) 177, 325, 508, 1058
AsuII TTCGAA 1 cut(s) 422
BanII GRGCYC 3 cut(s) 162, 406, 555
Bbv12I GWGCWC 3 cut(s) 406, 555, 1102
BbvI GCAGC 1 cut(s) 355
BccI CCATC 3 cut(s) 73, 1150, 1162
BceAI ACGGC 2 cut(s) 92, 281
BciVI GTATCC 2 cut(s) 571, 994
BclI TGATCA 1 cut(s) 472
BcnI CCSGG 1 cut(s) 360
BcoDI GTCTC 2 cut(s) 507, 1245
BfaI CTAG 2 cut(s) 755, 957
BfoI RGCGCY 1 cut(s) 80
BfuI GTATCC 2 cut(s) 571, 994
BglII AGATCT 1 cut(s) 625
BisI GCNGC 4 cut(s) 80, 83, 228, 344
BlsI GCNGC 4 cut(s) 81, 84, 229, 345
Bme1390I CCNGG 1 cut(s) 360
BmiI GGNNCC 1 cut(s) 1386
BmrFI CCNGG 1 cut(s) 360
BmsI GCATC 2 cut(s) 973, 1306
BplI GAGNNNNNCTC 2 cut(s) 551, 583
BpmI CTGGAG 1 cut(s) 57
Bpu10I CCTNAGC 1 cut(s) 534
Bpu14I TTCGAA 1 cut(s) 422
BpuEI CTTGAG 5 cut(s) 129, 187, 239, 757, 1229
BpuMI CCSGG 1 cut(s) 360
BsaI GGTCTC 2 cut(s) 507, 1245
BsaJI CCNNGG 1 cut(s) 108
BsaWI WCCGGW 1 cut(s) 574
BsaXI ACNNNNNCTCC 4 cut(s) 52, 82, 734, 764
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 1353
Bse118I RCCGGY 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 753
BseAI TCCGGA 1 cut(s) 574
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 2 cut(s) 966, 1173
BseLI CCNNNNNNNGG 2 cut(s) 168, 1353
BseMI GCAATG 1 cut(s) 753
BseMII CTCAG 3 cut(s) 210, 549, 824
BseRI GAGGAG 3 cut(s) 60, 129, 561
BseXI GCAGC 1 cut(s) 355
BseYI CCCAGC 1 cut(s) 776
Bsh1236I CGCG 3 cut(s) 85, 156, 494
BshFI GGCC 1 cut(s) 358
BsiHKAI GWGCWC 3 cut(s) 406, 555, 1102
BsiSI CCGG 6 cut(s) 35, 359, 575, 683, 788, 998
BslFI GGGAC 1 cut(s) 375
BslI CCNNNNNNNGG 2 cut(s) 168, 1353
BsmAI GTCTC 2 cut(s) 507, 1245
BsmFI GGGAC 1 cut(s) 375
BsnI GGCC 1 cut(s) 358
Bso31I GGTCTC 2 cut(s) 507, 1245
Bsp119I TTCGAA 1 cut(s) 422
Bsp1286I GDGCHC 4 cut(s) 162, 406, 555, 1102
Bsp13I TCCGGA 1 cut(s) 574
Bsp143I GATC 5 cut(s) 250, 472, 625, 685, 895
Bsp68I TCGCGA 1 cut(s) 156
BspACI CCGC 7 cut(s) 80, 83, 105, 228, 494, 851, 986
BspANI GGCC 1 cut(s) 358
BspCNI CTCAG 3 cut(s) 209, 550, 825
BspEI TCCGGA 1 cut(s) 574
BspFNI CGCG 3 cut(s) 85, 156, 494
BspLI GGNNCC 1 cut(s) 1386
BspPI GGATC 1 cut(s) 693
BspT104I TTCGAA 1 cut(s) 422
BspTNI GGTCTC 2 cut(s) 507, 1245
BsrDI GCAATG 1 cut(s) 753
BsrFI RCCGGY 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 5 cut(s) 250, 472, 625, 685, 895
Bst4CI ACNGT 3 cut(s) 287, 313, 930
Bst6I CTCTTC 1 cut(s) 218
BstBI TTCGAA 1 cut(s) 422
BstC8I GCNNGC 2 cut(s) 36, 158
BstDEI CTNAG 5 cut(s) 196, 534, 558, 729, 833
BstDSI CCRYGG 1 cut(s) 108
BstENI CCTNNNNNAGG 1 cut(s) 166
BstF5I GGATG 2 cut(s) 966, 1173
BstFNI CGCG 3 cut(s) 85, 156, 494
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 5 cut(s) 253, 475, 628, 688, 898
BstMAI GTCTC 2 cut(s) 507, 1245
BstMBI GATC 5 cut(s) 250, 472, 625, 685, 895
BstMWI GCNNNNNNNGC 1 cut(s) 401
BstNSI RCATGY 1 cut(s) 395
BstSCI CCNGG 1 cut(s) 358
BstUI CGCG 3 cut(s) 85, 156, 494
BstV1I GCAGC 1 cut(s) 355
BstX2I RGATCY 2 cut(s) 625, 685
BstYI RGATCY 2 cut(s) 625, 685
BsuI GTATCC 2 cut(s) 571, 994
BsuRI GGCC 1 cut(s) 358
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 2 cut(s) 966, 1173
BtsIMutI CAGTG 3 cut(s) 555, 830, 1019
BtuMI TCGCGA 1 cut(s) 156
Cac8I GCNNGC 2 cut(s) 36, 158
CfoI GCGC 1 cut(s) 79
Cfr10I RCCGGY 1 cut(s) 34
CseI GACGC 1 cut(s) 209
Csp6I GTAC 2 cut(s) 1113, 1327
CviAII CATG 4 cut(s) 392, 448, 632, 1133
CviQI GTAC 2 cut(s) 1113, 1327
DdeI CTNAG 5 cut(s) 196, 534, 558, 729, 833
DpnI GATC 5 cut(s) 252, 474, 627, 687, 897
DpnII GATC 5 cut(s) 250, 472, 625, 685, 895
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Ecl136II GAGCTC 2 cut(s) 404, 553
Eco24I GRGCYC 3 cut(s) 162, 406, 555
Eco31I GGTCTC 2 cut(s) 507, 1245
Eco32I GATATC 1 cut(s) 490
Eco53kI GAGCTC 2 cut(s) 404, 553
Eco57I CTGAAG 1 cut(s) 623
EcoICRI GAGCTC 2 cut(s) 404, 553
EcoNI CCTNNNNNAGG 1 cut(s) 166
EcoRV GATATC 1 cut(s) 490
EcoT38I GRGCYC 3 cut(s) 162, 406, 555
FaeI CATG 4 cut(s) 395, 451, 635, 1136
FaqI GGGAC 1 cut(s) 375
FatI CATG 4 cut(s) 391, 447, 631, 1132
FauI CCCGC 1 cut(s) 979
FbaI TGATCA 1 cut(s) 472
Fnu4HI GCNGC 4 cut(s) 80, 83, 228, 344
FokI GGATG 2 cut(s) 973, 1180
FriOI GRGCYC 3 cut(s) 162, 406, 555
Fsp4HI GCNGC 4 cut(s) 80, 83, 228, 344
FspBI CTAG 2 cut(s) 755, 957
GlaI GCGC 1 cut(s) 78
GluI GCNGC 4 cut(s) 80, 83, 228, 344
GsaI CCCAGC 1 cut(s) 780
GsuI CTGGAG 1 cut(s) 57
HaeII RGCGCY 1 cut(s) 80
HaeIII GGCC 1 cut(s) 358
HapII CCGG 6 cut(s) 35, 359, 575, 683, 788, 998
HgaI GACGC 1 cut(s) 209
HhaI GCGC 1 cut(s) 79
Hin1II CATG 4 cut(s) 395, 451, 635, 1136
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 1205
HinfI GANTC 5 cut(s) 119, 172, 240, 410, 1049
HpaII CCGG 6 cut(s) 35, 359, 575, 683, 788, 998
HphI GGTGA 4 cut(s) 177, 325, 508, 1058
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 4 cut(s) 53, 199, 900, 1315
Hpy188III TCNNGA 5 cut(s) 155, 237, 407, 575, 706
Hpy8I GTNNAC 1 cut(s) 304
Hpy99I CGWCG 4 cut(s) 19, 22, 302, 418
HpyAV CCTTC 3 cut(s) 541, 868, 875
HpyCH4III ACNGT 3 cut(s) 287, 313, 930
HpyCH4IV ACGT 2 cut(s) 364, 371
HpyCH4V TGCA 4 cut(s) 615, 621, 828, 1292
HpyF10VI GCNNNNNNNGC 1 cut(s) 401
HpyF3I CTNAG 5 cut(s) 196, 534, 558, 729, 833
HpySE526I ACGT 2 cut(s) 364, 371
Hsp92II CATG 4 cut(s) 395, 451, 635, 1136
HspAI GCGC 1 cut(s) 77
Kpn2I TCCGGA 1 cut(s) 574
KroI GCCGGC 1 cut(s) 34
KroNI GCCGGC 1 cut(s) 36
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 5 cut(s) 250, 472, 625, 685, 895
LmnI GCTCC 3 cut(s) 409, 550, 1105
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 2 cut(s) 973, 1306
MaeI CTAG 2 cut(s) 755, 957
MaeII ACGT 2 cut(s) 364, 371
MaeIII GTNAC 3 cut(s) 183, 478, 722
MalI GATC 5 cut(s) 252, 474, 627, 687, 897
MboI GATC 5 cut(s) 250, 472, 625, 685, 895
MboII GAAGA 5 cut(s) 205, 266, 620, 890, 1088
MflI RGATCY 2 cut(s) 625, 685
MhlI GDGCHC 4 cut(s) 162, 406, 555, 1102
MluCI AATT 2 cut(s) 217, 349
MlyI GAGTC 1 cut(s) 1058
MroI TCCGGA 1 cut(s) 574
MroNI GCCGGC 1 cut(s) 34
MroXI GAANNNNTTC 1 cut(s) 176
MseI TTAA 5 cut(s) 441, 453, 678, 783, 1248
MslI CAYNNNNRTG 1 cut(s) 812
MspI CCGG 6 cut(s) 35, 359, 575, 683, 788, 998
MspR9I CCNGG 1 cut(s) 360
MvnI CGCG 3 cut(s) 85, 156, 494
MwoI GCNNNNNNNGC 1 cut(s) 401
NaeI GCCGGC 1 cut(s) 36
NciI CCSGG 1 cut(s) 360
NdeII GATC 5 cut(s) 250, 472, 625, 685, 895
NgoMIV GCCGGC 1 cut(s) 34
NlaIII CATG 4 cut(s) 395, 451, 635, 1136
NlaIV GGNNCC 1 cut(s) 1386
NmuCI GTSAC 1 cut(s) 183
NruI TCGCGA 1 cut(s) 156
NspI RCATGY 1 cut(s) 395
NspV TTCGAA 1 cut(s) 422
PcsI WCGNNNNNNNCGW 1 cut(s) 419
PdiI GCCGGC 1 cut(s) 36
PdmI GAANNNNTTC 1 cut(s) 176
PfeI GAWTC 4 cut(s) 119, 172, 240, 410
PkrI GCNGC 4 cut(s) 81, 84, 229, 345
PleI GAGTC 1 cut(s) 1057
PpsI GAGTC 1 cut(s) 1057
PsiI TTATAA 2 cut(s) 591, 1119
Psp124BI GAGCTC 2 cut(s) 406, 555
Psp1406I AACGTT 1 cut(s) 371
PspFI CCCAGC 1 cut(s) 776
PspN4I GGNNCC 1 cut(s) 1386
PsuI RGATCY 2 cut(s) 625, 685
RruI TCGCGA 1 cut(s) 156
RsaI GTAC 2 cut(s) 1114, 1328
RsaNI GTAC 2 cut(s) 1113, 1327
RseI CAYNNNNRTG 1 cut(s) 812
SacI GAGCTC 2 cut(s) 406, 555
SaqAI TTAA 5 cut(s) 441, 453, 678, 783, 1248
SatI GCNGC 4 cut(s) 80, 83, 228, 344
Sau3AI GATC 5 cut(s) 250, 472, 625, 685, 895
SchI GAGTC 1 cut(s) 1058
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 4 cut(s) 162, 406, 555, 1102
SfaNI GCATC 2 cut(s) 973, 1306
SfuI TTCGAA 1 cut(s) 422
SmiMI CAYNNNNRTG 1 cut(s) 812
SmlI CTYRAG 5 cut(s) 144, 166, 254, 736, 1208
SmoI CTYRAG 5 cut(s) 144, 166, 254, 736, 1208
Sse9I AATT 2 cut(s) 217, 349
SsiI CCGC 7 cut(s) 80, 83, 105, 228, 494, 851, 986
SspMI CTAG 2 cut(s) 755, 957
SstI GAGCTC 2 cut(s) 406, 555
StyD4I CCNGG 1 cut(s) 358
TaaI ACNGT 3 cut(s) 287, 313, 930
TaiI ACGT 2 cut(s) 367, 374
TaqI TCGA 5 cut(s) 249, 416, 422, 672, 932
TasI AATT 2 cut(s) 217, 349
TatI WGTACW 1 cut(s) 1112
TauI GCSGC 3 cut(s) 82, 85, 230
TfiI GAWTC 4 cut(s) 119, 172, 240, 410
Tru1I TTAA 5 cut(s) 441, 453, 678, 783, 1248
Tru9I TTAA 5 cut(s) 441, 453, 678, 783, 1248
TscAI CASTG 3 cut(s) 562, 837, 1026
TseFI GTSAC 1 cut(s) 183
TseI GCWGC 1 cut(s) 343
Tsp45I GTSAC 1 cut(s) 183
TspRI CASTG 3 cut(s) 562, 837, 1026
XagI CCTNNNNNAGG 1 cut(s) 166
XceI RCATGY 1 cut(s) 395
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 2 cut(s) 755, 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.