Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8429607.1

Orthogroup ID

OG0015461

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1415

Gene Structure 1415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8429607.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1415 bp

actccaaactcacagagcttccaccaaaaccagaacaaccagaaatgggaaagatgtccccctcagtacgttcactagtctcaacctccctcatcagaaagccaccttctttatccccatctcataaaccccataactctcagacccacctcaccggaaaaagcccacctcaaaattccggcaaaacccaactccaaacccagaccaaaaacccattcacctccccaaacctctcagacgccaaaagggtcttcaactccatcaccaccgcaacaaaagcccctctcgatcttcgcgtccacaacgccctcctccaatcctacgccgcaatctccaccgtcaacgactccatcgctctcttcaaccacatgatcaaaacccaacccgcattctcgccggaccggtccacctaccacatcttgctcgcccagtcctgcaccgtacccgatcagaccctccaatctgttcaccaagtcctcaactttatgctcaacaatggcttccacccagataaggtcaccaccgacattgccgtccggtcactctgcttggccggacacgtcgacgaggcagtgcaagtgatgaagcaaatgtcgttgaaaaacgcggtaccggatacttatacttacaattttcttgtcaagtgtctctgcaagtcgagagttttgagtactgttaaagagtttattgacgatatgcgaaagtctttcgatttgaagccggatttggttacttatacgattatgattgacaatgtagctaatagcaagaatttacgtgaggctagccgattagtgaaggagttagataaggaggggtttaagccggattgctatgtttacaatacgattatgaaaggctattgtatgctgagtaagggtaatgaggtggttcaggtgttgaaggacatgcaggagaatggagtggagcctgatcttgttacatataatactctgatttttgggttgtcgaagtgtggcagggttatggaggcgaagaattatttgcggatcatggtggacatggggcatttccccaacgaggtgacttacacttcattgatgaatggattgtgtcggaagggggatgcattgggtgcagtggcattgttggaggagatgcaagcgcaggggtgcagcccgaatgagtgcacctataataccttgcttcatgggttgtgtaagggaaggttgttagagaaagggctggaattgtatggactgatgaaaaaagatgggatgaagcttgacacggcttcgtatagtacacttgtgaggacactttgtagggcaggcagggttgcagacgcttatggagtgtttgattatgcagttgagagtaagagcttaacaaatgtttctgcttacttgactttggaaagtacagttaagcagcttaagaaagcacgaccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

470

Amino Acids

52.2

Weight (kDa)

9.0

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17670 AT2G17670
fragaria_vesca	FvH4_1g10671
malus_domestica	MD02G1120600.v1.1
prunus_persica	Prupe.7G178400_v2.0.a1
rosa_laevigata	RLG00000016739
rosa_multiflora	Rmu_co8429607.1_g000001 Rmu_sc0000974.1_g000027 Rmu_sc0008442.1_g000010
rosa_roxburghii	Rroxscaffold_6G00394240
rosa_rugosa	Rorug02G0068500
rosa_samantha	Rh2AG115200 Rh2BG118100 Rh2CG119700 Rh2DG119400
rosa_wichuraiana	Rw2G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	532
Acc65I	GGTACC	1 cut(s)	609
AccB1I	GGYRCC	1 cut(s)	609
AccI	GTMKAC	1 cut(s)	563
AccII	CGCG	2 cut(s)	296, 607
AciI	CCGC	5 cut(s)	269, 326, 386, 607, 1008
AclWI	GGATC	1 cut(s)	1018
AcoI	YGGCCR	1 cut(s)	551
AcsI	RAATTY	2 cut(s)	174, 771
AcyI	GRCGYC	1 cut(s)	239
AfaI	GTAC	6 cut(s)	68, 443, 611, 672, 1266, 1383
AfiI	CCNNNNNNNGG	3 cut(s)	46, 513, 1041
AflII	CTTAAG	1 cut(s)	1396
AflIII	ACRYGT	1 cut(s)	558
AgeI	ACCGGT	1 cut(s)	401
AgsI	TTSAA	5 cut(s)	255, 363, 600, 717, 903
AhlI	ACTAGT	1 cut(s)	75
AjiI	CACGTC	1 cut(s)	561
AjuI	GAANNNNNNNTTGG	6 cut(s)	199, 231, 235, 267, 709, 741
AluBI	AGCT	5 cut(s)	18, 760, 1245, 1346, 1395
AluI	AGCT	5 cut(s)	18, 760, 1245, 1346, 1395
Alw21I	GWGCWC	1 cut(s)	1153
Alw26I	GTCTC	2 cut(s)	84, 652
Alw44I	GTGCAC	1 cut(s)	1149
AlwI	GGATC	1 cut(s)	1018
AoxI	GGCC	1 cut(s)	551
ApaLI	GTGCAC	1 cut(s)	1149
ApeKI	GCWGC	2 cut(s)	1136, 1392
ApoI	RAATTY	2 cut(s)	174, 771
AsiGI	ACCGGT	1 cut(s)	401
Asp718I	GGTACC	1 cut(s)	609
AspLEI	GCGC	1 cut(s)	1128
AspS9I	GGNCC	2 cut(s)	399, 404
AsuHPI	GGTGA	6 cut(s)	144, 210, 255, 460, 510, 1056
AsuNHI	GCTAGC	1 cut(s)	784
AvaII	GGWCC	2 cut(s)	399, 404
BaeGI	GKGCMC	1 cut(s)	1153
BanI	GGYRCC	1 cut(s)	609
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	1153
BbvI	GCAGC	2 cut(s)	1148, 1404
BccI	CCATC	4 cut(s)	126, 268, 358, 1228
BceAI	ACGGC	2 cut(s)	517, 1268
BciVI	GTATCC	1 cut(s)	609
BclI	TGATCA	1 cut(s)	371
BcoDI	GTCTC	2 cut(s)	84, 652
BcuI	ACTAGT	1 cut(s)	75
BfaI	CTAG	2 cut(s)	76, 785
BfrI	CTTAAG	1 cut(s)	1396
BfuI	GTATCC	1 cut(s)	609
BisI	GCNGC	3 cut(s)	326, 1137, 1393
BlsI	GCNGC	3 cut(s)	327, 1138, 1394
BmcAI	AGTACT	1 cut(s)	672
Bme18I	GGWCC	2 cut(s)	399, 404
BmgBI	CACGTC	1 cut(s)	561
BmgT120I	GGNCC	2 cut(s)	399, 404
BmiI	GGNNCC	2 cut(s)	611, 929
BmrI	ACTGGG	1 cut(s)	423
BmsI	GCATC	2 cut(s)	1077, 1109
BmtI	GCTAGC	1 cut(s)	788
BmuI	ACTGGG	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	243
BsaAI	YACGTR	1 cut(s)	778
BsaHI	GRCGYC	1 cut(s)	239
BsaWI	WCCGGW	4 cut(s)	154, 401, 536, 612
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 513, 1041
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	1 cut(s)	429
Bse3DI	GCAATG	1 cut(s)	527
BseGI	GGATG	2 cut(s)	1092, 1244
BseLI	CCNNNNNNNGG	3 cut(s)	46, 513, 1041
BseMI	GCAATG	1 cut(s)	527
BseMII	CTCAG	4 cut(s)	77, 154, 248, 862
BseNI	ACTGG	1 cut(s)	429
BseRI	GAGGAG	2 cut(s)	301, 1129
BseSI	GKGCMC	1 cut(s)	1153
BseXI	GCAGC	2 cut(s)	1148, 1404
BsgI	GTGCAG	3 cut(s)	420, 1118, 1155
Bsh1236I	CGCG	2 cut(s)	296, 607
BshFI	GGCC	1 cut(s)	553
BshNI	GGYRCC	1 cut(s)	609
BshTI	ACCGGT	1 cut(s)	401
BsiHKAI	GWGCWC	1 cut(s)	1153
BsiSI	CCGG	9 cut(s)	155, 179, 397, 402, 537, 554, 613, 721, 826
BslFI	GGGAC	1 cut(s)	42
BslI	CCNNNNNNNGG	3 cut(s)	46, 513, 1041
BsmAI	GTCTC	2 cut(s)	84, 652
BsmFI	GGGAC	1 cut(s)	42
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	1 cut(s)	553
Bsp1286I	GDGCHC	1 cut(s)	1153
Bsp143I	GATC	5 cut(s)	288, 371, 447, 933, 1010
BspACI	CCGC	5 cut(s)	269, 326, 386, 607, 1008
BspANI	GGCC	1 cut(s)	553
BspCNI	CTCAG	4 cut(s)	76, 153, 247, 863
BspFNI	CGCG	2 cut(s)	296, 607
BspLI	GGNNCC	2 cut(s)	611, 929
BspOI	GCTAGC	1 cut(s)	788
BspPI	GGATC	1 cut(s)	1018
BspT107I	GGYRCC	1 cut(s)	609
BspTI	CTTAAG	1 cut(s)	1396
BsrDI	GCAATG	1 cut(s)	527
BsrFI	RCCGGY	1 cut(s)	401
BsrI	ACTGG	1 cut(s)	429
BssAI	RCCGGY	1 cut(s)	401
BssMI	GATC	5 cut(s)	288, 371, 447, 933, 1010
BssNI	GRCGYC	1 cut(s)	239
Bst4CI	ACNGT	4 cut(s)	339, 441, 675, 1386
Bst6I	CTCTTC	1 cut(s)	364
BstACI	GRCGYC	1 cut(s)	239
BstAFI	CTTAAG	1 cut(s)	1396
BstAPI	GCANNNNNTGC	1 cut(s)	1096
BstBAI	YACGTR	1 cut(s)	778
BstC8I	GCNNGC	4 cut(s)	425, 786, 1124, 1293
BstDEI	CTNAG	4 cut(s)	63, 140, 234, 871
BstEII	GGTNACC	1 cut(s)	516
BstF5I	GGATG	2 cut(s)	1092, 1244
BstFNI	CGCG	2 cut(s)	296, 607
BstHHI	GCGC	1 cut(s)	1128
BstKTI	GATC	5 cut(s)	291, 374, 450, 936, 1013
BstMAI	GTCTC	2 cut(s)	84, 652
BstMBI	GATC	5 cut(s)	288, 371, 447, 933, 1010
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 1096
BstNSI	RCATGY	1 cut(s)	912
BstPI	GGTNACC	1 cut(s)	516
BstSLI	GKGCMC	1 cut(s)	1153
BstUI	CGCG	2 cut(s)	296, 607
BstV1I	GCAGC	2 cut(s)	1148, 1404
BstV2I	GAAGAC	1 cut(s)	243
BsuI	GTATCC	1 cut(s)	609
BsuRI	GGCC	1 cut(s)	553
BtgZI	GCGATG	1 cut(s)	336
BtrI	CACGTC	1 cut(s)	561
BtsCI	GGATG	2 cut(s)	1092, 1244
BtsI	GCAGTG	2 cut(s)	578, 1106
BtsIMutI	CAGTG	2 cut(s)	578, 1106
Cac8I	GCNNGC	4 cut(s)	425, 786, 1124, 1293
CfoI	GCGC	1 cut(s)	1128
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	2 cut(s)	399, 404
CpoI	CGGWCCG	1 cut(s)	399
CseI	GACGC	3 cut(s)	247, 285, 1315
Csp6I	GTAC	6 cut(s)	67, 442, 610, 671, 1265, 1382
CspAI	ACCGGT	1 cut(s)	401
CspCI	CAANNNNNGTGG	2 cut(s)	510, 545
CspI	CGGWCCG	1 cut(s)	399
CviAII	CATG	5 cut(s)	369, 909, 1014, 1023, 1171
CviQI	GTAC	6 cut(s)	67, 442, 610, 671, 1265, 1382
DdeI	CTNAG	4 cut(s)	63, 140, 234, 871
DpnI	GATC	5 cut(s)	290, 373, 449, 935, 1012
DpnII	GATC	5 cut(s)	288, 371, 447, 933, 1010
DrdI	GACNNNNNNGTC	1 cut(s)	532
DseDI	GACNNNNNNGTC	1 cut(s)	532
EaeI	YGGCCR	1 cut(s)	551
Eam1104I	CTCTTC	1 cut(s)	364
EarI	CTCTTC	1 cut(s)	364
Eco47I	GGWCC	2 cut(s)	399, 404
Eco91I	GGTNACC	1 cut(s)	516
EcoO65I	GGTNACC	1 cut(s)	516
EcoT22I	ATGCAT	1 cut(s)	1092
FaeI	CATG	5 cut(s)	372, 912, 1017, 1026, 1174
FaqI	GGGAC	1 cut(s)	42
FatI	CATG	5 cut(s)	368, 908, 1013, 1022, 1170
FauI	CCCGC	1 cut(s)	393
FbaI	TGATCA	1 cut(s)	371
FblI	GTMKAC	1 cut(s)	563
Fnu4HI	GCNGC	3 cut(s)	326, 1137, 1393
FokI	GGATG	2 cut(s)	1099, 1251
Fsp4HI	GCNGC	3 cut(s)	326, 1137, 1393
FspBI	CTAG	2 cut(s)	76, 785
GlaI	GCGC	1 cut(s)	1127
GluI	GCNGC	3 cut(s)	326, 1137, 1393
HaeIII	GGCC	1 cut(s)	553
HapII	CCGG	9 cut(s)	155, 179, 397, 402, 537, 554, 613, 721, 826
HgaI	GACGC	3 cut(s)	247, 285, 1315
HhaI	GCGC	1 cut(s)	1128
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	5 cut(s)	372, 912, 1017, 1026, 1174
Hin6I	GCGC	1 cut(s)	1126
HinP1I	GCGC	1 cut(s)	1126
HincII	GTYRAC	2 cut(s)	342, 564
HindII	GTYRAC	2 cut(s)	342, 564
HindIII	AAGCTT	1 cut(s)	1243
HinfI	GANTC	1 cut(s)	346
HpaII	CCGG	9 cut(s)	155, 179, 397, 402, 537, 554, 613, 721, 826
HphI	GGTGA	6 cut(s)	144, 210, 255, 460, 510, 1056
Hpy188I	TCNGA	6 cut(s)	97, 143, 237, 452, 956, 1079
Hpy188III	TCNNGA	2 cut(s)	286, 659
Hpy99I	CGWCG	2 cut(s)	565, 568
HpyAV	CCTTC	5 cut(s)	116, 792, 897, 1074, 1181
HpyCH4III	ACNGT	4 cut(s)	339, 441, 675, 1386
HpyCH4IV	ACGT	3 cut(s)	69, 560, 777
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 1096
HpyF3I	CTNAG	4 cut(s)	63, 140, 234, 871
HpySE526I	ACGT	3 cut(s)	69, 560, 777
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	5 cut(s)	372, 912, 1017, 1026, 1174
HspAI	GCGC	1 cut(s)	1126
KpnI	GGTACC	1 cut(s)	613
Ksp22I	TGATCA	1 cut(s)	371
Kzo9I	GATC	5 cut(s)	288, 371, 447, 933, 1010
LmnI	GCTCC	1 cut(s)	927
Lsp1109I	GCAGC	2 cut(s)	1148, 1404
LweI	GCATC	2 cut(s)	1077, 1109
MaeI	CTAG	2 cut(s)	76, 785
MaeII	ACGT	3 cut(s)	69, 560, 777
MaeIII	GTNAC	5 cut(s)	516, 539, 729, 939, 1044
MalI	GATC	5 cut(s)	290, 373, 449, 935, 1012
MboI	GATC	5 cut(s)	288, 371, 447, 933, 1010
MboII	GAAGA	4 cut(s)	243, 283, 351, 1008
MhlI	GDGCHC	1 cut(s)	1153
MluCI	AATT	5 cut(s)	174, 630, 771, 999, 1210
MlyI	GAGTC	1 cut(s)	340
MmeI	TCCRAC	2 cut(s)	1057, 1091
Mph1103I	ATGCAT	1 cut(s)	1092
MseI	TTAA	5 cut(s)	677, 821, 1348, 1388, 1397
MspCI	CTTAAG	1 cut(s)	1396
MspI	CCGG	9 cut(s)	155, 179, 397, 402, 537, 554, 613, 721, 826
Mva1269I	GAATGC	1 cut(s)	388
MvnI	CGCG	2 cut(s)	296, 607
MwoI	GCNNNNNNNGC	2 cut(s)	277, 1096
NdeII	GATC	5 cut(s)	288, 371, 447, 933, 1010
NheI	GCTAGC	1 cut(s)	784
NlaIII	CATG	5 cut(s)	372, 912, 1017, 1026, 1174
NlaIV	GGNNCC	2 cut(s)	611, 929
NmuCI	GTSAC	3 cut(s)	516, 539, 1044
NsiI	ATGCAT	1 cut(s)	1092
NspI	RCATGY	1 cut(s)	912
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PctI	GAATGC	1 cut(s)	388
PinAI	ACCGGT	1 cut(s)	401
PkrI	GCNGC	3 cut(s)	327, 1138, 1394
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
Ppu21I	YACGTR	1 cut(s)	778
PspEI	GGTNACC	1 cut(s)	516
PspN4I	GGNNCC	2 cut(s)	611, 929
PspPI	GGNCC	2 cut(s)	399, 404
RsaI	GTAC	6 cut(s)	68, 443, 611, 672, 1266, 1383
RsaNI	GTAC	6 cut(s)	67, 442, 610, 671, 1265, 1382
Rsr2I	CGGWCCG	1 cut(s)	399
RsrII	CGGWCCG	1 cut(s)	399
SalI	GTCGAC	1 cut(s)	562
SaqAI	TTAA	5 cut(s)	677, 821, 1348, 1388, 1397
SatI	GCNGC	3 cut(s)	326, 1137, 1393
Sau3AI	GATC	5 cut(s)	288, 371, 447, 933, 1010
Sau96I	GGNCC	2 cut(s)	399, 404
ScaI	AGTACT	1 cut(s)	672
SchI	GAGTC	1 cut(s)	340
SduI	GDGCHC	1 cut(s)	1153
SfaNI	GCATC	2 cut(s)	1077, 1109
SgrDI	CGTCGACG	1 cut(s)	562
SinI	GGWCC	2 cut(s)	399, 404
SmlI	CTYRAG	1 cut(s)	1396
SmoI	CTYRAG	1 cut(s)	1396
SpeI	ACTAGT	1 cut(s)	75
Sse9I	AATT	5 cut(s)	174, 630, 771, 999, 1210
SsiI	CCGC	5 cut(s)	269, 326, 386, 607, 1008
SspMI	CTAG	2 cut(s)	76, 785
TaaI	ACNGT	4 cut(s)	339, 441, 675, 1386
TaiI	ACGT	3 cut(s)	72, 563, 780
TaqI	TCGA	5 cut(s)	287, 563, 658, 710, 970
TasI	AATT	5 cut(s)	174, 630, 771, 999, 1210
TatI	WGTACW	3 cut(s)	670, 1264, 1381
TauI	GCSGC	1 cut(s)	328
Tru1I	TTAA	5 cut(s)	677, 821, 1348, 1388, 1397
Tru9I	TTAA	5 cut(s)	677, 821, 1348, 1388, 1397
TscAI	CASTG	2 cut(s)	578, 1106
TseFI	GTSAC	3 cut(s)	516, 539, 1044
TseI	GCWGC	2 cut(s)	1136, 1392
Tsp45I	GTSAC	3 cut(s)	516, 539, 1044
TspDTI	ATGAA	7 cut(s)	598, 868, 1046, 1078, 1159, 1240, 1255
TspRI	CASTG	2 cut(s)	578, 1106
Vha464I	CTTAAG	1 cut(s)	1396
VneI	GTGCAC	1 cut(s)	1149
VpaK11BI	GGWCC	2 cut(s)	399, 404
XapI	RAATTY	2 cut(s)	174, 771
XceI	RCATGY	1 cut(s)	912
XmiI	GTMKAC	1 cut(s)	563
XspI	CTAG	2 cut(s)	76, 785
ZrmI	AGTACT	1 cut(s)	672
Zsp2I	ATGCAT	1 cut(s)	1092

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.