Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0015461

Physical Location & Seq

Genomic Coordinates Reverse (-)

17586887 .. 17589680

Gene Structure 2794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G178400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGGGGAAAATCCCACCATCACTTCGATCATCAGTTTCAACCTCACTTATTAAAAAGCCATCTTCTTTAGTCCCAAACGAGTCCCCATCTCACAGACCCCATCACTTTCCCAAAAAAACCACCAAGAAAATCCCACCCCAACTTTCCGAGAAAACCAGAGAACCAACCTTCAGAAACCCCTTCACCTCCGCCAACCTCTCAGACGCGAAGAAGGTCTTCAACTCCATCGTCACCACCACAAAAGTCCCACTTGACCTTCGCGTCCACAACGCCCTCCTCCAATCCTATGCCTCAATCTCCACCCTCAATGACTCCATCTCTCTCTTCAACCACATGATCAAAACCCACCCTACTTTCTCTCCCGACCGATCGACCTACCACGTTTTGCTTTCCCAGTCCTGCAAAGCACCTGATCAGACCCTCAAACCCGTACACCAAGTCCTCAACTTTATGCTCACCAATGGCTTCAGTCCCAATAAGGTCACCACGGATATCGCAGTCCGGTCACTCTGTTCGTCTAATAATGTTGGCCTTGCCGTGGAATTGATCAAAGAAATGTCGCTTAAAAACGCAGCACCGGATTCTTATACCTACAATTTTCTTGTTAAGTGTCTCTGCAAGTCAAGTGCTGTGAGTACTGTTTATGATTTTATTGAAGAATTTAAAACGTCTTTCGGTTTGAAGCCTGATATTATCACTTATACAATTTTGATTGACAATGTGACTAATAGAGAGAATTTACGTGAGGCTACTAGGCTAGTGGATGTGTTGGCAAAGGAGGGAATTAGGCCTGATTGCTATATTTACAATACAATTATGAAAGGTTGTTGTACGTTGAATTTGGGCAATGAGGCACTTGAGGTTTTGAAGAAAATGAAGGAGAATGGTGTGGAGCCTGATCTTGTAACGTACAATACTTTGATTTTTGGGTTATCGAAATGTGGGCGAGTTGTTGAGGCTAAGAAGTATTTGGGTGTCATGGTTGAGATGGGTCATTTCCCGGATGCGGTGACATACACTTCATTGATGAATGGATTGTGTCGGAAAGGGGATGTCTTGGGTGCATTAGGGTTGTTGGAGGAGATGCAAGAAAAGGGGTGTGAACCGAATGTTTGCACGTATAATACATTGCTTCATGGATTGTGTAAAGCAAAATTGTTAGAGAAAGGGCTAGACTTGTATGGGGTGATGAAAGAATGTGGGATGAAGCTTGATACAGCTTCTTATGCTACACTTGTGAGGGCACTTTGTAGGGAGGGGAGGGTGGCAGATGCTTATGAAGTGTTTGATTATGCAGTTGAGAGTAAGAGTGTAACTGATGTTGCTGCTTATACAACTTTGGAGGGTACACTGAAGTGGCTTAAGAAAGCAAGGGAACATGGCCTTGCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

465

Amino Acids

51.42

Weight (kDa)

8.81

Isoelectric Point (pI)

29.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17670 AT2G17670
fragaria_vesca	FvH4_1g10671
malus_domestica	MD02G1120600.v1.1
prunus_persica	Prupe.7G178400_v2.0.a1
rosa_laevigata	RLG00000016739
rosa_multiflora	Rmu_co8429607.1_g000001 Rmu_sc0000974.1_g000027 Rmu_sc0008442.1_g000010
rosa_roxburghii	Rroxscaffold_6G00394240
rosa_rugosa	Rorug02G0068500
rosa_samantha	Rh2AG115200 Rh2BG118100 Rh2CG119700 Rh2DG119400
rosa_wichuraiana	Rw2G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AccII	CGCG	2 cut(s)	206, 261
AciI	CCGC	2 cut(s)	189, 1007
AcsI	RAATTY	3 cut(s)	659, 736, 838
AcuI	CTGAAG	3 cut(s)	154, 451, 1373
AfaI	GTAC	5 cut(s)	432, 637, 832, 911, 1348
AfiI	CCNNNNNNNGG	2 cut(s)	538, 1006
AflII	CTTAAG	1 cut(s)	1361
AgsI	TTSAA	7 cut(s)	39, 220, 328, 656, 682, 838, 868
AleI	CACNNNNGTG	1 cut(s)	1354
AluBI	AGCT	2 cut(s)	1210, 1220
AluI	AGCT	2 cut(s)	1210, 1220
Alw26I	GTCTC	1 cut(s)	617
AoxI	GGCC	3 cut(s)	529, 788, 1381
ApeKI	GCWGC	2 cut(s)	572, 1325
ApoI	RAATTY	3 cut(s)	659, 736, 838
Asp700I	GAANNNNTTC	1 cut(s)	215
AsuC2I	CCSGG	1 cut(s)	1001
AsuHPI	GGTGA	6 cut(s)	175, 223, 448, 475, 1021, 1198
BaeGI	GKGCMC	1 cut(s)	1246
BbsI	GAAGAC	1 cut(s)	208
BbvI	GCAGC	2 cut(s)	584, 1312
BccI	CCATC	7 cut(s)	25, 67, 94, 108, 233, 323, 982
BceAI	ACGGC	1 cut(s)	521
BclI	TGATCA	3 cut(s)	336, 412, 546
BcnI	CCSGG	1 cut(s)	1001
BcoDI	GTCTC	1 cut(s)	617
BfaI	CTAG	3 cut(s)	753, 758, 1172
BfrI	CTTAAG	1 cut(s)	1361
BisI	GCNGC	2 cut(s)	573, 1326
BlsI	GCNGC	2 cut(s)	574, 1327
BmcAI	AGTACT	1 cut(s)	637
Bme1390I	CCNGG	1 cut(s)	1001
BmiI	GGNNCC	1 cut(s)	894
BmrFI	CCNGG	1 cut(s)	1001
BmrI	ACTGGG	1 cut(s)	388
BmsI	GCATC	3 cut(s)	994, 1074, 1261
BmuI	ACTGGG	1 cut(s)	388
BpiI	GAAGAC	1 cut(s)	208
BpuEI	CTTGAG	1 cut(s)	878
BpuMI	CCSGG	1 cut(s)	1001
BsaAI	YACGTR	2 cut(s)	743, 1119
BsaJI	CCNNGG	2 cut(s)	486, 537
BsaWI	WCCGGW	2 cut(s)	501, 577
BsaXI	ACNNNNNCTCC	2 cut(s)	343, 373
Bsc4I	CCNNNNNNNGG	2 cut(s)	538, 1006
Bse1I	ACTGG	1 cut(s)	394
Bse3DI	GCAATG	2 cut(s)	853, 1127
BseDI	CCNNGG	2 cut(s)	486, 537
BseGI	GGATG	4 cut(s)	769, 1009, 1057, 1209
BseLI	CCNNNNNNNGG	2 cut(s)	538, 1006
BseMI	GCAATG	2 cut(s)	853, 1127
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	394
BseRI	GAGGAG	2 cut(s)	266, 1094
BseSI	GKGCMC	1 cut(s)	1246
BseXI	GCAGC	2 cut(s)	584, 1312
Bsh1236I	CGCG	2 cut(s)	206, 261
Bsh1285I	CGRYCG	2 cut(s)	367, 371
BshFI	GGCC	3 cut(s)	531, 790, 1383
BsiEI	CGRYCG	2 cut(s)	367, 371
BsiSI	CCGG	3 cut(s)	502, 578, 1001
BslFI	GGGAC	4 cut(s)	56, 67, 230, 456
BslI	CCNNNNNNNGG	2 cut(s)	538, 1006
BsmAI	GTCTC	1 cut(s)	617
BsmFI	GGGAC	4 cut(s)	56, 67, 230, 456
BsnI	GGCC	3 cut(s)	531, 790, 1383
Bsp1286I	GDGCHC	1 cut(s)	1246
Bsp143I	GATC	6 cut(s)	26, 336, 368, 412, 546, 898
BspACI	CCGC	2 cut(s)	189, 1007
BspANI	GGCC	3 cut(s)	531, 790, 1383
BspCNI	CTCAG	1 cut(s)	212
BspFNI	CGCG	2 cut(s)	206, 261
BspLI	GGNNCC	1 cut(s)	894
BspTI	CTTAAG	1 cut(s)	1361
BsrDI	GCAATG	2 cut(s)	853, 1127
BsrI	ACTGG	1 cut(s)	394
BssECI	CCNNGG	2 cut(s)	486, 537
BssMI	GATC	6 cut(s)	26, 336, 368, 412, 546, 898
Bst4CI	ACNGT	1 cut(s)	640
Bst6I	CTCTTC	1 cut(s)	329
BstAFI	CTTAAG	1 cut(s)	1361
BstBAI	YACGTR	2 cut(s)	743, 1119
BstDEI	CTNAG	2 cut(s)	199, 960
BstDSI	CCRYGG	2 cut(s)	486, 537
BstEII	GGTNACC	1 cut(s)	481
BstF5I	GGATG	4 cut(s)	769, 1009, 1057, 1209
BstFNI	CGCG	2 cut(s)	206, 261
BstKTI	GATC	6 cut(s)	29, 339, 371, 415, 549, 901
BstMAI	GTCTC	1 cut(s)	617
BstMBI	GATC	6 cut(s)	26, 336, 368, 412, 546, 898
BstMCI	CGRYCG	2 cut(s)	367, 371
BstMWI	GCNNNNNNNGC	1 cut(s)	1226
BstPI	GGTNACC	1 cut(s)	481
BstSCI	CCNGG	1 cut(s)	999
BstSLI	GKGCMC	1 cut(s)	1246
BstUI	CGCG	2 cut(s)	206, 261
BstV1I	GCAGC	2 cut(s)	584, 1312
BstV2I	GAAGAC	1 cut(s)	208
BsuRI	GGCC	3 cut(s)	531, 790, 1383
BtgI	CCRYGG	2 cut(s)	486, 537
BtsCI	GGATG	4 cut(s)	769, 1009, 1057, 1209
BtsIMutI	CAGTG	1 cut(s)	1349
CseI	GACGC	2 cut(s)	212, 250
Csp6I	GTAC	5 cut(s)	431, 636, 831, 910, 1347
CviAII	CATG	4 cut(s)	334, 979, 1136, 1379
CviQI	GTAC	5 cut(s)	431, 636, 831, 910, 1347
DdeI	CTNAG	2 cut(s)	199, 960
DpnI	GATC	6 cut(s)	28, 338, 370, 414, 548, 900
DpnII	GATC	6 cut(s)	26, 336, 368, 412, 546, 898
DraI	TTTAAA	1 cut(s)	664
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
EciI	GGCGGA	1 cut(s)	178
Eco147I	AGGCCT	1 cut(s)	790
Eco32I	GATATC	1 cut(s)	493
Eco57I	CTGAAG	3 cut(s)	154, 451, 1373
Eco91I	GGTNACC	1 cut(s)	481
EcoO65I	GGTNACC	1 cut(s)	481
EcoRV	GATATC	1 cut(s)	493
FaeI	CATG	4 cut(s)	337, 982, 1139, 1382
FalI	AAGNNNNNCTT	4 cut(s)	200, 232, 234, 266
FaqI	GGGAC	4 cut(s)	56, 67, 230, 456
FatI	CATG	4 cut(s)	333, 978, 1135, 1378
FbaI	TGATCA	3 cut(s)	336, 412, 546
Fnu4HI	GCNGC	2 cut(s)	573, 1326
FokI	GGATG	4 cut(s)	776, 1016, 1064, 1216
Fsp4HI	GCNGC	2 cut(s)	573, 1326
FspBI	CTAG	3 cut(s)	753, 758, 1172
GluI	GCNGC	2 cut(s)	573, 1326
HaeIII	GGCC	3 cut(s)	531, 790, 1383
HapII	CCGG	3 cut(s)	502, 578, 1001
HgaI	GACGC	2 cut(s)	212, 250
Hin1II	CATG	4 cut(s)	337, 982, 1139, 1382
HindIII	AAGCTT	1 cut(s)	1208
HinfI	GANTC	3 cut(s)	80, 311, 581
HpaII	CCGG	3 cut(s)	502, 578, 1001
HphI	GGTGA	6 cut(s)	175, 223, 448, 475, 1021, 1198
Hpy166II	GTNNAC	4 cut(s)	265, 433, 1103, 1349
Hpy188I	TCNGA	5 cut(s)	148, 173, 202, 417, 1044
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	4 cut(s)	265, 433, 1103, 1349
HpyAV	CCTTC	5 cut(s)	178, 190, 205, 266, 871
HpyCH4III	ACNGT	1 cut(s)	640
HpyCH4IV	ACGT	6 cut(s)	381, 668, 742, 833, 908, 1118
HpyCH4V	TGCA	6 cut(s)	402, 618, 1064, 1087, 1116, 1295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1226
HpyF3I	CTNAG	2 cut(s)	199, 960
HpySE526I	ACGT	6 cut(s)	381, 668, 742, 833, 908, 1118
Hsp92II	CATG	4 cut(s)	337, 982, 1139, 1382
Ksp22I	TGATCA	3 cut(s)	336, 412, 546
Kzo9I	GATC	6 cut(s)	26, 336, 368, 412, 546, 898
LmnI	GCTCC	1 cut(s)	892
Lsp1109I	GCAGC	2 cut(s)	584, 1312
LweI	GCATC	3 cut(s)	994, 1074, 1261
MaeI	CTAG	3 cut(s)	753, 758, 1172
MaeII	ACGT	6 cut(s)	381, 668, 742, 833, 908, 1118
MaeIII	GTNAC	7 cut(s)	229, 481, 504, 721, 904, 1009, 1312
MalI	GATC	6 cut(s)	28, 338, 370, 414, 548, 900
MboI	GATC	6 cut(s)	26, 336, 368, 412, 546, 898
MboII	GAAGA	6 cut(s)	54, 208, 220, 316, 668, 880
MhlI	GDGCHC	1 cut(s)	1246
MluCI	AATT	9 cut(s)	542, 595, 659, 705, 736, 783, 813, 838, 1154
MlyI	GAGTC	2 cut(s)	89, 305
MmeI	TCCRAC	2 cut(s)	1022, 1056
MroXI	GAANNNNTTC	1 cut(s)	215
MseI	TTAA	5 cut(s)	51, 564, 606, 663, 1362
MslI	CAYNNNNRTG	1 cut(s)	1354
MspCI	CTTAAG	1 cut(s)	1361
MspI	CCGG	3 cut(s)	502, 578, 1001
MspR9I	CCNGG	1 cut(s)	1001
MvnI	CGCG	2 cut(s)	206, 261
MwoI	GCNNNNNNNGC	1 cut(s)	1226
NciI	CCSGG	1 cut(s)	1001
NdeII	GATC	6 cut(s)	26, 336, 368, 412, 546, 898
NlaIII	CATG	4 cut(s)	337, 982, 1139, 1382
NlaIV	GGNNCC	1 cut(s)	894
NmuCI	GTSAC	5 cut(s)	229, 481, 504, 721, 1009
OliI	CACNNNNGTG	1 cut(s)	1354
PceI	AGGCCT	1 cut(s)	790
PdmI	GAANNNNTTC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	581
PfoI	TCCNGGA	1 cut(s)	999
PkrI	GCNGC	2 cut(s)	574, 1327
Ple19I	CGATCG	1 cut(s)	371
PleI	GAGTC	2 cut(s)	88, 305
PpsI	GAGTC	2 cut(s)	88, 305
Ppu21I	YACGTR	2 cut(s)	743, 1119
PspEI	GGTNACC	1 cut(s)	481
PspN4I	GGNNCC	1 cut(s)	894
PvuI	CGATCG	1 cut(s)	371
RsaI	GTAC	5 cut(s)	432, 637, 832, 911, 1348
RsaNI	GTAC	5 cut(s)	431, 636, 831, 910, 1347
RseI	CAYNNNNRTG	1 cut(s)	1354
SaqAI	TTAA	5 cut(s)	51, 564, 606, 663, 1362
SatI	GCNGC	2 cut(s)	573, 1326
Sau3AI	GATC	6 cut(s)	26, 336, 368, 412, 546, 898
ScaI	AGTACT	1 cut(s)	637
SchI	GAGTC	2 cut(s)	89, 305
ScrFI	CCNGG	1 cut(s)	1001
SduI	GDGCHC	1 cut(s)	1246
SfaNI	GCATC	3 cut(s)	994, 1074, 1261
SmiMI	CAYNNNNRTG	1 cut(s)	1354
SmlI	CTYRAG	2 cut(s)	857, 1361
SmoI	CTYRAG	2 cut(s)	857, 1361
Sse9I	AATT	9 cut(s)	542, 595, 659, 705, 736, 783, 813, 838, 1154
SseBI	AGGCCT	1 cut(s)	790
SsiI	CCGC	2 cut(s)	189, 1007
SspMI	CTAG	3 cut(s)	753, 758, 1172
StuI	AGGCCT	1 cut(s)	790
StyD4I	CCNGG	1 cut(s)	999
TaaI	ACNGT	1 cut(s)	640
TaiI	ACGT	6 cut(s)	384, 671, 745, 836, 911, 1121
TaqI	TCGA	3 cut(s)	25, 371, 935
TaqII	GACCGA	1 cut(s)	381
TasI	AATT	9 cut(s)	542, 595, 659, 705, 736, 783, 813, 838, 1154
TatI	WGTACW	1 cut(s)	635
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	5 cut(s)	51, 564, 606, 663, 1362
Tru9I	TTAA	5 cut(s)	51, 564, 606, 663, 1362
TscAI	CASTG	1 cut(s)	1356
TseFI	GTSAC	5 cut(s)	229, 481, 504, 721, 1009
TseI	GCWGC	2 cut(s)	572, 1325
Tsp45I	GTSAC	5 cut(s)	229, 481, 504, 721, 1009
TspDTI	ATGAA	8 cut(s)	833, 890, 1011, 1043, 1124, 1205, 1220, 1293
TspGWI	ACGGA	1 cut(s)	503
TspRI	CASTG	1 cut(s)	1356
Vha464I	CTTAAG	1 cut(s)	1361
XapI	RAATTY	3 cut(s)	659, 736, 838
XmnI	GAANNNNTTC	1 cut(s)	215
XspI	CTAG	3 cut(s)	753, 758, 1172
ZrmI	AGTACT	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.