Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008442.1

Orthogroup ID

OG0015461

Physical Location & Seq

Genomic Coordinates Forward (+)

30331 .. 31701

Gene Structure 1371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008442.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

atgggaaagatgtccccctcagtacgttcactagtctcaacctccctcatcagaaagccaccttctttatccccatcccataaaccccataactctcagacccacctcaccggaaaaagcccacctcaaaattccggcaaaacccaactccaaacccagaccaaaaacccattcacctccccaaacctctcagacgccaaaagggtcttcaactccatcaccaccgcaacaaaagcccctctcgatcttcgcgtccacaacgccctcctccaatcctacgccgcaatctccaccgtcaacgactccatcgctctcttcaaccacatgatcaaaacccaacccgcattctcgccggaccggtccacctaccacatcttgctcgcccagtcctgcaccgtacccgatcagaccctccaatctgttcaccaagtcctcaactttatgctcaacaatggcttccacccagataaggtcaccaccgacattgccgtccggtcactctgcttggccggacacgtcgacgaggcagtgcaagtgatgaagcaaatgtcgttgaaaaacgcggtaccggatacttatacttacaattttcttgtcaagtgtctctgcaagtcgagagttttgagtactgttaaagagtttattgacgatatgcgaaagtctttcgatttgaagccggatttggttacttatacgattatgattgacaatgtagctaatagcaagaatttacgtgaggctagccgattagtgaaggagttagataaggaggggtttaagccggattgctatgtttacaatacgattatgaaaggctattgtatgctgagtaagggtaatgaggtggttcaggtgttgaaggacatgcaggagaatggagtggagcctgatcttgttacatataatactctgatttttgggttgtcgaagtgtggcagggttatggaggcgaagaattatttgcggatcatggtggacatggggcatttccccaacgaggtgacttacacttcattgatgaatggattgtgtcggaagggggatgcattgggtgcagtggcattgttggaggagatgcaagcgcaggggtgcagcccgaatgagtgcacctataataccttgcttcatgggttgtgtaagggaaggttgttagagaaagggctggaattgtatggactgatgaaaaaagatgggatgaagcttgacacggcttcgtatagtacacttgtgaggacactttgtagggcaggcagggttgcagacgcttatggagtgtttgattatgcagttgagagtaagagcttaacaaatgtttctgcttacttgactttggaaagtacagttaagcagcttaagaaagcacgaccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

456

Amino Acids

50.62

Weight (kDa)

9.07

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17670 AT2G17670
fragaria_vesca	FvH4_1g10671
malus_domestica	MD02G1120600.v1.1
prunus_persica	Prupe.7G178400_v2.0.a1
rosa_laevigata	RLG00000016739
rosa_multiflora	Rmu_co8429607.1_g000001 Rmu_sc0000974.1_g000027 Rmu_sc0008442.1_g000010
rosa_roxburghii	Rroxscaffold_6G00394240
rosa_rugosa	Rorug02G0068500
rosa_samantha	Rh2AG115200 Rh2BG118100 Rh2CG119700 Rh2DG119400
rosa_wichuraiana	Rw2G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	488
Acc65I	GGTACC	1 cut(s)	565
AccB1I	GGYRCC	1 cut(s)	565
AccI	GTMKAC	1 cut(s)	519
AccII	CGCG	2 cut(s)	252, 563
AciI	CCGC	5 cut(s)	225, 282, 342, 563, 964
AclWI	GGATC	1 cut(s)	974
AcoI	YGGCCR	1 cut(s)	507
AcsI	RAATTY	2 cut(s)	130, 727
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	6 cut(s)	24, 399, 567, 628, 1222, 1339
AfiI	CCNNNNNNNGG	2 cut(s)	469, 997
AflII	CTTAAG	1 cut(s)	1352
AflIII	ACRYGT	1 cut(s)	514
AgeI	ACCGGT	1 cut(s)	357
AgsI	TTSAA	5 cut(s)	211, 319, 556, 673, 859
AhlI	ACTAGT	1 cut(s)	31
AjiI	CACGTC	1 cut(s)	517
AjuI	GAANNNNNNNTTGG	6 cut(s)	155, 187, 191, 223, 665, 697
AluBI	AGCT	4 cut(s)	716, 1201, 1302, 1351
AluI	AGCT	4 cut(s)	716, 1201, 1302, 1351
Alw21I	GWGCWC	1 cut(s)	1109
Alw26I	GTCTC	2 cut(s)	40, 608
Alw44I	GTGCAC	1 cut(s)	1105
AlwI	GGATC	1 cut(s)	974
AoxI	GGCC	1 cut(s)	507
ApaLI	GTGCAC	1 cut(s)	1105
ApeKI	GCWGC	2 cut(s)	1092, 1348
ApoI	RAATTY	2 cut(s)	130, 727
AsiGI	ACCGGT	1 cut(s)	357
Asp718I	GGTACC	1 cut(s)	565
AspLEI	GCGC	1 cut(s)	1084
AspS9I	GGNCC	2 cut(s)	355, 360
AsuHPI	GGTGA	6 cut(s)	100, 166, 211, 416, 466, 1012
AsuNHI	GCTAGC	1 cut(s)	740
AvaII	GGWCC	2 cut(s)	355, 360
BaeGI	GKGCMC	1 cut(s)	1109
BanI	GGYRCC	1 cut(s)	565
BbsI	GAAGAC	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	1109
BbvI	GCAGC	2 cut(s)	1104, 1360
BccI	CCATC	4 cut(s)	82, 224, 314, 1184
BceAI	ACGGC	2 cut(s)	473, 1224
BciVI	GTATCC	1 cut(s)	565
BclI	TGATCA	1 cut(s)	327
BcoDI	GTCTC	2 cut(s)	40, 608
BcuI	ACTAGT	1 cut(s)	31
BfaI	CTAG	2 cut(s)	32, 741
BfrI	CTTAAG	1 cut(s)	1352
BfuI	GTATCC	1 cut(s)	565
BisI	GCNGC	3 cut(s)	282, 1093, 1349
BlsI	GCNGC	3 cut(s)	283, 1094, 1350
BmcAI	AGTACT	1 cut(s)	628
Bme18I	GGWCC	2 cut(s)	355, 360
BmgBI	CACGTC	1 cut(s)	517
BmgT120I	GGNCC	2 cut(s)	355, 360
BmiI	GGNNCC	2 cut(s)	567, 885
BmrI	ACTGGG	1 cut(s)	379
BmsI	GCATC	2 cut(s)	1033, 1065
BmtI	GCTAGC	1 cut(s)	744
BmuI	ACTGGG	1 cut(s)	379
BpiI	GAAGAC	1 cut(s)	199
BsaAI	YACGTR	1 cut(s)	734
BsaHI	GRCGYC	1 cut(s)	195
BsaWI	WCCGGW	4 cut(s)	110, 357, 492, 568
Bsc4I	CCNNNNNNNGG	2 cut(s)	469, 997
Bse118I	RCCGGY	1 cut(s)	357
Bse1I	ACTGG	1 cut(s)	385
Bse3DI	GCAATG	1 cut(s)	483
BseGI	GGATG	3 cut(s)	74, 1048, 1200
BseLI	CCNNNNNNNGG	2 cut(s)	469, 997
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	4 cut(s)	33, 110, 204, 818
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	2 cut(s)	257, 1085
BseSI	GKGCMC	1 cut(s)	1109
BseXI	GCAGC	2 cut(s)	1104, 1360
BsgI	GTGCAG	3 cut(s)	376, 1074, 1111
Bsh1236I	CGCG	2 cut(s)	252, 563
BshFI	GGCC	1 cut(s)	509
BshNI	GGYRCC	1 cut(s)	565
BshTI	ACCGGT	1 cut(s)	357
BsiHKAI	GWGCWC	1 cut(s)	1109
BsiSI	CCGG	9 cut(s)	111, 135, 353, 358, 493, 510, 569, 677, 782
BslI	CCNNNNNNNGG	2 cut(s)	469, 997
BsmAI	GTCTC	2 cut(s)	40, 608
BsmI	GAATGC	1 cut(s)	344
BsnI	GGCC	1 cut(s)	509
Bsp1286I	GDGCHC	1 cut(s)	1109
Bsp143I	GATC	5 cut(s)	244, 327, 403, 889, 966
BspACI	CCGC	5 cut(s)	225, 282, 342, 563, 964
BspANI	GGCC	1 cut(s)	509
BspCNI	CTCAG	4 cut(s)	32, 109, 203, 819
BspFNI	CGCG	2 cut(s)	252, 563
BspLI	GGNNCC	2 cut(s)	567, 885
BspOI	GCTAGC	1 cut(s)	744
BspPI	GGATC	1 cut(s)	974
BspT107I	GGYRCC	1 cut(s)	565
BspTI	CTTAAG	1 cut(s)	1352
BsrDI	GCAATG	1 cut(s)	483
BsrFI	RCCGGY	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	385
BssAI	RCCGGY	1 cut(s)	357
BssMI	GATC	5 cut(s)	244, 327, 403, 889, 966
BssNI	GRCGYC	1 cut(s)	195
Bst4CI	ACNGT	4 cut(s)	295, 397, 631, 1342
Bst6I	CTCTTC	1 cut(s)	320
BstACI	GRCGYC	1 cut(s)	195
BstAFI	CTTAAG	1 cut(s)	1352
BstAPI	GCANNNNNTGC	1 cut(s)	1052
BstBAI	YACGTR	1 cut(s)	734
BstC8I	GCNNGC	4 cut(s)	381, 742, 1080, 1249
BstDEI	CTNAG	4 cut(s)	19, 96, 190, 827
BstEII	GGTNACC	1 cut(s)	472
BstF5I	GGATG	3 cut(s)	74, 1048, 1200
BstFNI	CGCG	2 cut(s)	252, 563
BstHHI	GCGC	1 cut(s)	1084
BstKTI	GATC	5 cut(s)	247, 330, 406, 892, 969
BstMAI	GTCTC	2 cut(s)	40, 608
BstMBI	GATC	5 cut(s)	244, 327, 403, 889, 966
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 1052
BstNSI	RCATGY	1 cut(s)	868
BstPI	GGTNACC	1 cut(s)	472
BstSLI	GKGCMC	1 cut(s)	1109
BstUI	CGCG	2 cut(s)	252, 563
BstV1I	GCAGC	2 cut(s)	1104, 1360
BstV2I	GAAGAC	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	565
BsuRI	GGCC	1 cut(s)	509
BtgZI	GCGATG	1 cut(s)	292
BtrI	CACGTC	1 cut(s)	517
BtsCI	GGATG	3 cut(s)	74, 1048, 1200
BtsI	GCAGTG	2 cut(s)	534, 1062
BtsIMutI	CAGTG	2 cut(s)	534, 1062
Cac8I	GCNNGC	4 cut(s)	381, 742, 1080, 1249
CfoI	GCGC	1 cut(s)	1084
Cfr10I	RCCGGY	1 cut(s)	357
Cfr13I	GGNCC	2 cut(s)	355, 360
CpoI	CGGWCCG	1 cut(s)	355
CseI	GACGC	3 cut(s)	203, 241, 1271
Csp6I	GTAC	6 cut(s)	23, 398, 566, 627, 1221, 1338
CspAI	ACCGGT	1 cut(s)	357
CspCI	CAANNNNNGTGG	2 cut(s)	466, 501
CspI	CGGWCCG	1 cut(s)	355
CviAII	CATG	5 cut(s)	325, 865, 970, 979, 1127
CviQI	GTAC	6 cut(s)	23, 398, 566, 627, 1221, 1338
DdeI	CTNAG	4 cut(s)	19, 96, 190, 827
DpnI	GATC	5 cut(s)	246, 329, 405, 891, 968
DpnII	GATC	5 cut(s)	244, 327, 403, 889, 966
DrdI	GACNNNNNNGTC	1 cut(s)	488
DseDI	GACNNNNNNGTC	1 cut(s)	488
EaeI	YGGCCR	1 cut(s)	507
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
Eco47I	GGWCC	2 cut(s)	355, 360
Eco91I	GGTNACC	1 cut(s)	472
EcoO65I	GGTNACC	1 cut(s)	472
EcoT22I	ATGCAT	1 cut(s)	1048
FaeI	CATG	5 cut(s)	328, 868, 973, 982, 1130
FatI	CATG	5 cut(s)	324, 864, 969, 978, 1126
FauI	CCCGC	1 cut(s)	349
FbaI	TGATCA	1 cut(s)	327
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	3 cut(s)	282, 1093, 1349
FokI	GGATG	3 cut(s)	61, 1055, 1207
Fsp4HI	GCNGC	3 cut(s)	282, 1093, 1349
FspBI	CTAG	2 cut(s)	32, 741
GlaI	GCGC	1 cut(s)	1083
GluI	GCNGC	3 cut(s)	282, 1093, 1349
HaeIII	GGCC	1 cut(s)	509
HapII	CCGG	9 cut(s)	111, 135, 353, 358, 493, 510, 569, 677, 782
HgaI	GACGC	3 cut(s)	203, 241, 1271
HhaI	GCGC	1 cut(s)	1084
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	5 cut(s)	328, 868, 973, 982, 1130
Hin6I	GCGC	1 cut(s)	1082
HinP1I	GCGC	1 cut(s)	1082
HincII	GTYRAC	2 cut(s)	298, 520
HindII	GTYRAC	2 cut(s)	298, 520
HindIII	AAGCTT	1 cut(s)	1199
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	9 cut(s)	111, 135, 353, 358, 493, 510, 569, 677, 782
HphI	GGTGA	6 cut(s)	100, 166, 211, 416, 466, 1012
Hpy188I	TCNGA	6 cut(s)	53, 99, 193, 408, 912, 1035
Hpy188III	TCNNGA	2 cut(s)	242, 615
Hpy99I	CGWCG	2 cut(s)	521, 524
HpyAV	CCTTC	5 cut(s)	72, 748, 853, 1030, 1137
HpyCH4III	ACNGT	4 cut(s)	295, 397, 631, 1342
HpyCH4IV	ACGT	3 cut(s)	25, 516, 733
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 1052
HpyF3I	CTNAG	4 cut(s)	19, 96, 190, 827
HpySE526I	ACGT	3 cut(s)	25, 516, 733
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	5 cut(s)	328, 868, 973, 982, 1130
HspAI	GCGC	1 cut(s)	1082
KpnI	GGTACC	1 cut(s)	569
Ksp22I	TGATCA	1 cut(s)	327
Kzo9I	GATC	5 cut(s)	244, 327, 403, 889, 966
LmnI	GCTCC	1 cut(s)	883
Lsp1109I	GCAGC	2 cut(s)	1104, 1360
LweI	GCATC	2 cut(s)	1033, 1065
MaeI	CTAG	2 cut(s)	32, 741
MaeII	ACGT	3 cut(s)	25, 516, 733
MaeIII	GTNAC	5 cut(s)	472, 495, 685, 895, 1000
MalI	GATC	5 cut(s)	246, 329, 405, 891, 968
MboI	GATC	5 cut(s)	244, 327, 403, 889, 966
MboII	GAAGA	4 cut(s)	199, 239, 307, 964
MhlI	GDGCHC	1 cut(s)	1109
MluCI	AATT	5 cut(s)	130, 586, 727, 955, 1166
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	2 cut(s)	1013, 1047
Mph1103I	ATGCAT	1 cut(s)	1048
MseI	TTAA	5 cut(s)	633, 777, 1304, 1344, 1353
MspCI	CTTAAG	1 cut(s)	1352
MspI	CCGG	9 cut(s)	111, 135, 353, 358, 493, 510, 569, 677, 782
Mva1269I	GAATGC	1 cut(s)	344
MvnI	CGCG	2 cut(s)	252, 563
MwoI	GCNNNNNNNGC	2 cut(s)	233, 1052
NdeII	GATC	5 cut(s)	244, 327, 403, 889, 966
NheI	GCTAGC	1 cut(s)	740
NlaIII	CATG	5 cut(s)	328, 868, 973, 982, 1130
NlaIV	GGNNCC	2 cut(s)	567, 885
NmuCI	GTSAC	3 cut(s)	472, 495, 1000
NsiI	ATGCAT	1 cut(s)	1048
NspI	RCATGY	1 cut(s)	868
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PctI	GAATGC	1 cut(s)	344
PinAI	ACCGGT	1 cut(s)	357
PkrI	GCNGC	3 cut(s)	283, 1094, 1350
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
Ppu21I	YACGTR	1 cut(s)	734
PspEI	GGTNACC	1 cut(s)	472
PspN4I	GGNNCC	2 cut(s)	567, 885
PspPI	GGNCC	2 cut(s)	355, 360
RsaI	GTAC	6 cut(s)	24, 399, 567, 628, 1222, 1339
RsaNI	GTAC	6 cut(s)	23, 398, 566, 627, 1221, 1338
Rsr2I	CGGWCCG	1 cut(s)	355
RsrII	CGGWCCG	1 cut(s)	355
SalI	GTCGAC	1 cut(s)	518
SaqAI	TTAA	5 cut(s)	633, 777, 1304, 1344, 1353
SatI	GCNGC	3 cut(s)	282, 1093, 1349
Sau3AI	GATC	5 cut(s)	244, 327, 403, 889, 966
Sau96I	GGNCC	2 cut(s)	355, 360
ScaI	AGTACT	1 cut(s)	628
SchI	GAGTC	1 cut(s)	296
SduI	GDGCHC	1 cut(s)	1109
SfaNI	GCATC	2 cut(s)	1033, 1065
SgrDI	CGTCGACG	1 cut(s)	518
SinI	GGWCC	2 cut(s)	355, 360
SmlI	CTYRAG	1 cut(s)	1352
SmoI	CTYRAG	1 cut(s)	1352
SpeI	ACTAGT	1 cut(s)	31
Sse9I	AATT	5 cut(s)	130, 586, 727, 955, 1166
SsiI	CCGC	5 cut(s)	225, 282, 342, 563, 964
SspMI	CTAG	2 cut(s)	32, 741
TaaI	ACNGT	4 cut(s)	295, 397, 631, 1342
TaiI	ACGT	3 cut(s)	28, 519, 736
TaqI	TCGA	5 cut(s)	243, 519, 614, 666, 926
TasI	AATT	5 cut(s)	130, 586, 727, 955, 1166
TatI	WGTACW	3 cut(s)	626, 1220, 1337
TauI	GCSGC	1 cut(s)	284
Tru1I	TTAA	5 cut(s)	633, 777, 1304, 1344, 1353
Tru9I	TTAA	5 cut(s)	633, 777, 1304, 1344, 1353
TscAI	CASTG	2 cut(s)	534, 1062
TseFI	GTSAC	3 cut(s)	472, 495, 1000
TseI	GCWGC	2 cut(s)	1092, 1348
Tsp45I	GTSAC	3 cut(s)	472, 495, 1000
TspDTI	ATGAA	7 cut(s)	554, 824, 1002, 1034, 1115, 1196, 1211
TspRI	CASTG	2 cut(s)	534, 1062
Vha464I	CTTAAG	1 cut(s)	1352
VneI	GTGCAC	1 cut(s)	1105
VpaK11BI	GGWCC	2 cut(s)	355, 360
XapI	RAATTY	2 cut(s)	130, 727
XceI	RCATGY	1 cut(s)	868
XmiI	GTMKAC	1 cut(s)	519
XspI	CTAG	2 cut(s)	32, 741
ZrmI	AGTACT	1 cut(s)	628
Zsp2I	ATGCAT	1 cut(s)	1048

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.