MD02G1120600.v1.1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
9858445 .. 9861389
2945 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1120600.v1.1.491

Sequence Viewer

Length: 1467 bp
ATGGGGAAAATCCCACCATCTCTGCGCTCATCAGTTTCAACCTCCATCATCAAAAAGCCACAATCTTTAATCCCAAACGAATCCCCATCTCGCAAGCCCCATAACTTTCCCAAGAAACCCACCAGGAAAATCCCACCCCAACTTTCCGAGAAAACCCAGGAACCCACCTCCTTCCGCAACCCCTTCACCTCCCCAAACATCTCCGACGCCAAGAGTGTCTTCACCTCCATCGTCGCCGCCACGAAATCCCCACTCGACCTCCGCGTCCACAACGCCCTGCTCCAATCCTACGCCGCAATCTCCACCGTCAACGACTCCATATCTCTCTTCAACCACATGATCAAAACACACCCTGCGTTCTCCCCCGACAAATCGACCTACCATGTTTTGCTCTCCCAGTCCTGCAAAGCAGGGGATGAGACACTGGGGTCCGTACACCAGGTACTCAACTTTATGCTCACCAATGGCTTCAGTCCCGATAAGGTCACCACAGATATCGCTGTCCGGTCACTCTGTTCTGCCGGTAATGTTGACCTCGCTGTTGAATTGGTTAAAGAAATGGCGATGAAAAACGCAGCCCCGGACAGTTATACATACAATTTTCTGGTGAAGTGTCTCTGCAAGTCGAGATCTGTGAGTAGTGTTTATGAGTTTATTGAAAGTATGAAAAGTTCTTTGAATTTAAAGCCTGATCTTGTCACTTATACTATTTTGATTGACAATGTGACGAATAGAGAGAATTTACGCGAGGCGACTAAGTTAGTGGAAATGTTAGCTGAGGAGGGATTTAAGCCTGATTGCTATATTTACAATACAATTATGAAAGGTTTTTGTAAATTGAATTTGGGCAAAGAGGCAGTTGATGTTTTCAAGAAAATGAAGGAGGAGGGCGTGGAGCCTGATCTTGTAACGTATAATACTTTGATTTTTGGGTTATCGAAATGTGGAAGGATTATGGAGGCTAAGAAGTATCTGGGTGTCATGGTGGAAATGGGACATTTCCCGGATGCGGTGACATACACTTCATTGATGAATGGAATGTGTCGGAAGGGGGATGTCTTGGGTGCAATGGAGTTGTTGGAGGAGATGCAAGCACAGGGGTGCCAACCAAATGTTTGCACGTATAATACGTTGCTTCATGGATTATGCAAGTCAAAACTTTTAGAGAAAGGGTTAGAATTGTATGGGCTGATGAAAGAATGTGGGATGAAGCTTGATACAGCTTCTTATGCTACACTTGTGAGGGCACTTTGTAGGGAGGGTAGGGTTGCAGATGCTTACGAAGTGTTTGATTATGCAGTTGAGAGTAAGAGTGTAACTGATGTTGCTGCTTACACGACTTTGGAGGGTACACTGAAGTGGCTTAAGAAAGCAAGGGAGCAAGGTCTTGCTTTTCGTTACAGGACTGTTGGAGGTTGTTTGAGTTGTCAACAATGGTCCCTGGTGAAGCAACAAGACTGCATGTAG

Protein Analysis

489

Amino Acids

54.19

Weight (kDa)

8.61

Isoelectric Point (pI)

32.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 108 - 225 1.4e-07 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 155 - 187 1e-05 PPR repeat
PPR_2 PF13041 159 - 208 9.5e-11 PPR repeat family
TPR_24 PF23276 174 - 293 4e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 198 - 241 2.2e-08 PPR repeat family
PPR_3 PF13812 226 - 277 8.1e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 230 - 279 1.9e-09 PPR repeat family
PPR_3 PF13812 260 - 309 6.7e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 262 - 294 5.6e-09 PPR repeat
PPR_2 PF13041 265 - 314 2.1e-16 PPR repeat family
PPR PF01535 269 - 298 3.3e-08 PPR repeat
PPR_long PF17177 285 - 438 6.7e-14 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 286 - 396 4e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 297 - 328 3e-09 PPR repeat
PPR_2 PF13041 300 - 349 2.6e-14 PPR repeat family
PPR PF01535 303 - 332 5e-06 PPR repeat
PPR_3 PF13812 330 - 380 6.2e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 331 - 364 2.1e-12 PPR repeat
PPR_2 PF13041 335 - 384 1.2e-19 PPR repeat family
PPR PF01535 338 - 368 2.4e-08 PPR repeat
PPR_1 PF12854 367 - 398 1.9e-09 PPR repeat
PPR_2 PF13041 370 - 419 1.1e-13 PPR repeat family
PPR PF01535 374 - 402 2.6e-07 PPR repeat
PPR_1 PF12854 402 - 432 2.2e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015461)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 263, 427
AccB1I GGYRCC 1 cut(s) 1101
AccII CGCG 2 cut(s) 264, 747
AciI CCGC 5 cut(s) 175, 237, 262, 294, 1010
AcsI RAATTY 3 cut(s) 679, 739, 841
AcuI CTGAAG 2 cut(s) 454, 1376
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 3 cut(s) 435, 444, 1351
AfiI CCNNNNNNNGG 1 cut(s) 1009
AflII CTTAAG 1 cut(s) 1364
AgsI TTSAA 7 cut(s) 39, 331, 545, 659, 679, 841, 871
AjnI CCWGG 4 cut(s) 122, 156, 438, 1440
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AleI CACNNNNGTG 2 cut(s) 1099, 1357
AluBI AGCT 3 cut(s) 776, 1213, 1223
AluI AGCT 3 cut(s) 776, 1213, 1223
Alw26I GTCTC 2 cut(s) 413, 620
ApeKI GCWGC 2 cut(s) 575, 1328
ApoI RAATTY 3 cut(s) 679, 739, 841
AspLEI GCGC 1 cut(s) 27
AspS9I GGNCC 2 cut(s) 429, 1437
AsuC2I CCSGG 2 cut(s) 581, 1004
AsuHPI GGTGA 7 cut(s) 178, 214, 451, 478, 619, 1024, 1456
AvaII GGWCC 2 cut(s) 429, 1437
BaeGI GKGCMC 1 cut(s) 1249
BanI GGYRCC 1 cut(s) 1101
BbsI GAAGAC 1 cut(s) 211
BbvCI CCTCAGC 1 cut(s) 777
BbvI GCAGC 2 cut(s) 587, 1315
BccI CCATC 4 cut(s) 25, 53, 94, 236
BciT130I CCWGG 4 cut(s) 124, 158, 440, 1442
BclI TGATCA 1 cut(s) 339
BcnI CCSGG 2 cut(s) 581, 1004
BcoDI GTCTC 2 cut(s) 413, 620
BfrI CTTAAG 1 cut(s) 1364
BglII AGATCT 1 cut(s) 629
BisI GCNGC 4 cut(s) 237, 294, 576, 1329
BlsI GCNGC 4 cut(s) 238, 295, 577, 1330
Bme1390I CCNGG 6 cut(s) 124, 158, 440, 581, 1004, 1442
Bme18I GGWCC 2 cut(s) 429, 1437
BmgT120I GGNCC 2 cut(s) 429, 1437
BmiI GGNNCC 5 cut(s) 162, 430, 897, 1103, 1439
BmrFI CCNGG 6 cut(s) 124, 158, 440, 581, 1004, 1442
BmrI ACTGGG 2 cut(s) 391, 434
BmsI GCATC 3 cut(s) 997, 1077, 1264
BmuI ACTGGG 2 cut(s) 391, 434
BpiI GAAGAC 1 cut(s) 211
Bpu10I CCTNAGC 1 cut(s) 777
BpuMI CCSGG 2 cut(s) 581, 1004
BsaAI YACGTR 1 cut(s) 1122
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 3 cut(s) 156, 579, 1440
BsaWI WCCGGW 1 cut(s) 504
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 1009
Bse118I RCCGGY 1 cut(s) 521
Bse1I ACTGG 2 cut(s) 397, 429
Bse3DI GCAATG 1 cut(s) 1074
BseBI CCWGG 4 cut(s) 124, 158, 440, 1442
BseDI CCNNGG 3 cut(s) 156, 579, 1440
BseGI GGATG 4 cut(s) 421, 1012, 1060, 1212
BseLI CCNNNNNNNGG 1 cut(s) 1009
BseMI GCAATG 1 cut(s) 1074
BseMII CTCAG 1 cut(s) 768
BseNI ACTGG 2 cut(s) 397, 429
BseRI GAGGAG 3 cut(s) 794, 899, 1097
BseSI GKGCMC 1 cut(s) 1249
BseXI GCAGC 2 cut(s) 587, 1315
Bsh1236I CGCG 2 cut(s) 264, 747
BshNI GGYRCC 1 cut(s) 1101
BsiSI CCGG 4 cut(s) 505, 522, 581, 1004
BslFI GGGAC 3 cut(s) 459, 1008, 1423
BslI CCNNNNNNNGG 1 cut(s) 1009
BsmAI GTCTC 2 cut(s) 413, 620
BsmFI GGGAC 3 cut(s) 459, 1008, 1423
Bsp1286I GDGCHC 1 cut(s) 1249
Bsp143I GATC 4 cut(s) 339, 629, 691, 901
BspACI CCGC 5 cut(s) 175, 237, 262, 294, 1010
BspCNI CTCAG 1 cut(s) 769
BspFNI CGCG 2 cut(s) 264, 747
BspLI GGNNCC 5 cut(s) 162, 430, 897, 1103, 1439
BspT107I GGYRCC 1 cut(s) 1101
BspTI CTTAAG 1 cut(s) 1364
BsrDI GCAATG 1 cut(s) 1074
BsrFI RCCGGY 1 cut(s) 521
BsrI ACTGG 2 cut(s) 397, 429
BssAI RCCGGY 1 cut(s) 521
BssECI CCNNGG 3 cut(s) 156, 579, 1440
BssMI GATC 4 cut(s) 339, 629, 691, 901
BssNI GRCGYC 1 cut(s) 207
Bst2UI CCWGG 4 cut(s) 124, 158, 440, 1442
Bst4CI ACNGT 3 cut(s) 307, 587, 1408
Bst6I CTCTTC 1 cut(s) 332
BstACI GRCGYC 1 cut(s) 207
BstAFI CTTAAG 1 cut(s) 1364
BstBAI YACGTR 1 cut(s) 1122
BstC8I GCNNGC 2 cut(s) 95, 1092
BstDEI CTNAG 3 cut(s) 756, 777, 963
BstEII GGTNACC 1 cut(s) 484
BstF5I GGATG 4 cut(s) 421, 1012, 1060, 1212
BstFNI CGCG 2 cut(s) 264, 747
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 4 cut(s) 342, 632, 694, 904
BstMAI GTCTC 2 cut(s) 413, 620
BstMBI GATC 4 cut(s) 339, 629, 691, 901
BstMWI GCNNNNNNNGC 1 cut(s) 1229
BstNI CCWGG 4 cut(s) 124, 158, 440, 1442
BstNSI RCATGY 1 cut(s) 1465
BstPI GGTNACC 1 cut(s) 484
BstSCI CCNGG 6 cut(s) 122, 156, 438, 579, 1002, 1440
BstSLI GKGCMC 1 cut(s) 1249
BstUI CGCG 2 cut(s) 264, 747
BstV1I GCAGC 2 cut(s) 587, 1315
BstV2I GAAGAC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 629
BstYI RGATCY 1 cut(s) 629
BtgZI GCGATG 1 cut(s) 578
BtsCI GGATG 4 cut(s) 421, 1012, 1060, 1212
BtsIMutI CAGTG 2 cut(s) 422, 1352
Cac8I GCNNGC 2 cut(s) 95, 1092
CfoI GCGC 1 cut(s) 27
Cfr10I RCCGGY 1 cut(s) 521
Cfr13I GGNCC 2 cut(s) 429, 1437
CseI GACGC 2 cut(s) 215, 253
CsiI ACCWGGT 1 cut(s) 438
Csp6I GTAC 3 cut(s) 434, 443, 1350
CviAII CATG 5 cut(s) 337, 383, 982, 1139, 1462
CviQI GTAC 3 cut(s) 434, 443, 1350
DdeI CTNAG 3 cut(s) 756, 777, 963
DpnI GATC 4 cut(s) 341, 631, 693, 903
DpnII GATC 4 cut(s) 339, 629, 691, 901
DraI TTTAAA 1 cut(s) 684
DrdI GACNNNNNNGTC 2 cut(s) 263, 427
DseDI GACNNNNNNGTC 2 cut(s) 263, 427
Eam1104I CTCTTC 1 cut(s) 332
EarI CTCTTC 1 cut(s) 332
Eco32I GATATC 1 cut(s) 496
Eco47I GGWCC 2 cut(s) 429, 1437
Eco57I CTGAAG 2 cut(s) 454, 1376
Eco91I GGTNACC 1 cut(s) 484
EcoO65I GGTNACC 1 cut(s) 484
EcoRII CCWGG 4 cut(s) 122, 156, 438, 1440
EcoRV GATATC 1 cut(s) 496
FaeI CATG 5 cut(s) 340, 386, 985, 1142, 1465
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FaqI GGGAC 3 cut(s) 459, 1008, 1423
FatI CATG 5 cut(s) 336, 382, 981, 1138, 1461
FbaI TGATCA 1 cut(s) 339
Fnu4HI GCNGC 4 cut(s) 237, 294, 576, 1329
FokI GGATG 4 cut(s) 428, 1019, 1067, 1219
Fsp4HI GCNGC 4 cut(s) 237, 294, 576, 1329
GlaI GCGC 1 cut(s) 26
GluI GCNGC 4 cut(s) 237, 294, 576, 1329
HapII CCGG 4 cut(s) 505, 522, 581, 1004
HgaI GACGC 2 cut(s) 215, 253
HhaI GCGC 1 cut(s) 27
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 5 cut(s) 340, 386, 985, 1142, 1465
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HincII GTYRAC 3 cut(s) 310, 532, 1430
HindII GTYRAC 3 cut(s) 310, 532, 1430
HindIII AAGCTT 1 cut(s) 1211
HinfI GANTC 2 cut(s) 80, 314
HpaII CCGG 4 cut(s) 505, 522, 581, 1004
HphI GGTGA 7 cut(s) 178, 214, 451, 478, 619, 1024, 1456
Hpy166II GTNNAC 6 cut(s) 268, 310, 436, 532, 1352, 1430
Hpy188I TCNGA 3 cut(s) 148, 205, 1047
Hpy188III TCNNGA 3 cut(s) 476, 627, 871
Hpy8I GTNNAC 6 cut(s) 268, 310, 436, 532, 1352, 1430
Hpy99I CGWCG 2 cut(s) 209, 236
HpyAV CCTTC 5 cut(s) 181, 193, 874, 942, 1042
HpyCH4III ACNGT 3 cut(s) 307, 587, 1408
HpyCH4IV ACGT 3 cut(s) 911, 1121, 1130
HpyCH4V TGCA 9 cut(s) 405, 621, 1067, 1090, 1119, 1149, 1271, 1298, 1461
HpyF10VI GCNNNNNNNGC 1 cut(s) 1229
HpyF3I CTNAG 3 cut(s) 756, 777, 963
HpySE526I ACGT 3 cut(s) 911, 1121, 1130
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 5 cut(s) 340, 386, 985, 1142, 1465
HspAI GCGC 1 cut(s) 25
Ksp22I TGATCA 1 cut(s) 339
Kzo9I GATC 4 cut(s) 339, 629, 691, 901
LmnI GCTCC 3 cut(s) 285, 895, 1378
Lsp1109I GCAGC 2 cut(s) 587, 1315
LweI GCATC 3 cut(s) 997, 1077, 1264
MabI ACCWGGT 1 cut(s) 438
MaeII ACGT 3 cut(s) 911, 1121, 1130
MaeIII GTNAC 8 cut(s) 484, 507, 697, 724, 907, 1012, 1315, 1397
MalI GATC 4 cut(s) 341, 631, 693, 903
MboI GATC 4 cut(s) 339, 629, 691, 901
MboII GAAGA 2 cut(s) 211, 319
MflI RGATCY 1 cut(s) 629
MhlI GDGCHC 1 cut(s) 1249
MluCI AATT 8 cut(s) 545, 598, 679, 739, 816, 836, 841, 1178
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 4 cut(s) 228, 1025, 1059, 1390
MseI TTAA 5 cut(s) 68, 552, 683, 789, 1365
MslI CAYNNNNRTG 2 cut(s) 1099, 1357
MspCI CTTAAG 1 cut(s) 1364
MspI CCGG 4 cut(s) 505, 522, 581, 1004
MspR9I CCNGG 6 cut(s) 124, 158, 440, 581, 1004, 1442
MvaI CCWGG 4 cut(s) 124, 158, 440, 1442
MvnI CGCG 2 cut(s) 264, 747
MwoI GCNNNNNNNGC 1 cut(s) 1229
NciI CCSGG 2 cut(s) 581, 1004
NdeII GATC 4 cut(s) 339, 629, 691, 901
NlaIII CATG 5 cut(s) 340, 386, 985, 1142, 1465
NlaIV GGNNCC 5 cut(s) 162, 430, 897, 1103, 1439
NmuCI GTSAC 5 cut(s) 484, 507, 697, 724, 1012
NspI RCATGY 1 cut(s) 1465
OliI CACNNNNGTG 2 cut(s) 1099, 1357
PcsI WCGNNNNNNNCGW 2 cut(s) 261, 1127
PfeI GAWTC 1 cut(s) 80
PfoI TCCNGGA 1 cut(s) 1002
PkrI GCNGC 4 cut(s) 238, 295, 577, 1330
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
Ppu21I YACGTR 1 cut(s) 1122
Psp6I CCWGG 4 cut(s) 122, 156, 438, 1440
PspEI GGTNACC 1 cut(s) 484
PspGI CCWGG 4 cut(s) 122, 156, 438, 1440
PspN4I GGNNCC 5 cut(s) 162, 430, 897, 1103, 1439
PspPI GGNCC 2 cut(s) 429, 1437
PsrI GAACNNNNNNTAC 2 cut(s) 655, 687
PsuI RGATCY 1 cut(s) 629
RsaI GTAC 3 cut(s) 435, 444, 1351
RsaNI GTAC 3 cut(s) 434, 443, 1350
RseI CAYNNNNRTG 2 cut(s) 1099, 1357
SaqAI TTAA 5 cut(s) 68, 552, 683, 789, 1365
SatI GCNGC 4 cut(s) 237, 294, 576, 1329
Sau3AI GATC 4 cut(s) 339, 629, 691, 901
Sau96I GGNCC 2 cut(s) 429, 1437
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 6 cut(s) 124, 158, 440, 581, 1004, 1442
SduI GDGCHC 1 cut(s) 1249
SexAI ACCWGGT 1 cut(s) 438
SfaNI GCATC 3 cut(s) 997, 1077, 1264
SinI GGWCC 2 cut(s) 429, 1437
SmiMI CAYNNNNRTG 2 cut(s) 1099, 1357
SmlI CTYRAG 1 cut(s) 1364
SmoI CTYRAG 1 cut(s) 1364
Sse9I AATT 8 cut(s) 545, 598, 679, 739, 816, 836, 841, 1178
SsiI CCGC 5 cut(s) 175, 237, 262, 294, 1010
StyD4I CCNGG 6 cut(s) 122, 156, 438, 579, 1002, 1440
TaaI ACNGT 3 cut(s) 307, 587, 1408
TaiI ACGT 3 cut(s) 914, 1124, 1133
TaqI TCGA 4 cut(s) 255, 374, 626, 938
TasI AATT 8 cut(s) 545, 598, 679, 739, 816, 836, 841, 1178
TauI GCSGC 2 cut(s) 239, 296
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 5 cut(s) 68, 552, 683, 789, 1365
Tru9I TTAA 5 cut(s) 68, 552, 683, 789, 1365
TscAI CASTG 2 cut(s) 429, 1359
TseFI GTSAC 5 cut(s) 484, 507, 697, 724, 1012
TseI GCWGC 2 cut(s) 575, 1328
Tsp45I GTSAC 5 cut(s) 484, 507, 697, 724, 1012
TspDTI ATGAA 9 cut(s) 581, 680, 836, 893, 1014, 1046, 1127, 1208, 1223
TspGWI ACGGA 1 cut(s) 421
TspRI CASTG 2 cut(s) 429, 1359
Vha464I CTTAAG 1 cut(s) 1364
VpaK11BI GGWCC 2 cut(s) 429, 1437
XapI RAATTY 3 cut(s) 679, 739, 841
XceI RCATGY 1 cut(s) 1465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.