AT2G17975

zinc finger (Ran-binding) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008648
Physical Location & Seq
Reverse (-)
7822074 .. 7824121
2048 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17975.2

Sequence Viewer

Length: 807 bp
ATGGGAGACGGAAGAGAAGGAGACTGGGAATGTTTAGGATGCAGAAACAGGAATTATGCGTTTAGATCATTCTGTAACAGATGCAAGCAGCCTCGTCTTATCATGGATAATAATACTTCTCCAAACTCTAAGTGGCTTCCTCGTATCGGCGATTGGATCTGCACTGGTTGTACTAACAACAATTATGCATCACGAGAAAAGTGCAAGAAATGTGGGCAATCTAAGGAAGTAGCAGCATTGTCAGCACTTGCTATCCCTGGAGCTTCTCTTCAAACTCATCTCCATTACTTCACCCGTGGACCTGAGTCACATGATCAACCTGGTTCTTTACTCGCATTCTCTAACGCTACAAATCAAGCTTCGGTTCATAAAGAATGGAGGAGTGGTGACTGGATTTGCAGATGTGGTTTTCACAATTATTCCTCTCGTATACAGTGCAAAAAGTGCAATGAAATAGCTCCACTAGCCCTTGGTACAAAGAGATTAGCATCAGAAGCTTTGGCTCATGAATGGGATAGCAAAAGACTGAATCAAGGATATACAAGCATGCAAACACAGTCAGCGATATATGCATCTTTTCCTGGTATGAGCCTAGGAAGGGTCTCAAATTGGCAACTTCCTCTCCCGTTTCTACAACAACACTCAACACCTGCTTTACTTGGAATGGGAGTGAAACAATGGCGTGATGGCGACTGGATGTGTACAAATTGCAAGAATCACAATTATGCATCACGAGCAGAGTGCAATAGGTGCAAGACTACACGAGATATCCTTGATCAGGACATAACTCCAACAGAACAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005642 GO:0005643 GO:0005737 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006403 GO:0006405 GO:0006406 GO:0006464 GO:0006508 GO:0006511 GO:0006606 GO:0006607 GO:0006611 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007088 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0010564 GO:0010638 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016740 GO:0016925 GO:0017016 GO:0017038 GO:0018193 GO:0018205 GO:0019538 GO:0019787 GO:0019789 GO:0019899 GO:0019941 GO:0022402 GO:0030163 GO:0031090 GO:0031267 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032446 GO:0032886 GO:0032991 GO:0033036 GO:0033043 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0042175 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044614 GO:0044615 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0045787 GO:0045840 GO:0045931 GO:0046602 GO:0046604 GO:0046605 GO:0046607 GO:0046907 GO:0048518 GO:0048522 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051020 GO:0051028 GO:0051128 GO:0051130 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051493 GO:0051495 GO:0051603 GO:0051640 GO:0051641 GO:0051642 GO:0051649 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0061842 GO:0065007 GO:0070507 GO:0070647 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0090068 GO:0098589 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903047
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

268

Amino Acids

30.24

Weight (kDa)

8.93

Isoelectric Point (pI)

54.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 198 - 225 1.1e-06 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 658
Acc36I ACCTGC 1 cut(s) 658
AccI GTMKAC 1 cut(s) 430
AclWI GGATC 1 cut(s) 164
AfaI GTAC 3 cut(s) 172, 475, 703
AfiI CCNNNNNNNGG 3 cut(s) 146, 598, 778
AgsI TTSAA 1 cut(s) 272
AjnI CCWGG 3 cut(s) 256, 319, 580
AluBI AGCT 4 cut(s) 263, 359, 458, 497
AluI AGCT 4 cut(s) 263, 359, 458, 497
Alw26I GTCTC 2 cut(s) 15, 607
AlwI GGATC 1 cut(s) 164
ApeKI GCWGC 2 cut(s) 88, 233
AspA2I CCTAGG 1 cut(s) 592
AspS9I GGNCC 1 cut(s) 299
AsuHPI GGTGA 2 cut(s) 283, 398
AvaII GGWCC 1 cut(s) 299
AvrII CCTAGG 1 cut(s) 592
BauI CACGAG 3 cut(s) 192, 732, 762
BbvI GCAGC 2 cut(s) 100, 245
BccI CCATC 1 cut(s) 680
BcgI CGANNNNNNTGC 4 cut(s) 183, 217, 723, 757
BciT130I CCWGG 3 cut(s) 258, 321, 582
BclI TGATCA 2 cut(s) 313, 775
BcoDI GTCTC 2 cut(s) 15, 607
BfaI CTAG 2 cut(s) 464, 593
BfuAI ACCTGC 1 cut(s) 658
BisI GCNGC 2 cut(s) 89, 234
BlnI CCTAGG 1 cut(s) 592
BlsI GCNGC 2 cut(s) 90, 235
Bme1390I CCNGG 3 cut(s) 258, 321, 582
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 299
BmrFI CCNGG 3 cut(s) 258, 321, 582
BmrI ACTGGG 1 cut(s) 34
BmsI GCATC 6 cut(s) 29, 71, 197, 497, 581, 737
BmuI ACTGGG 1 cut(s) 34
BoxI GACNNNNGTC 1 cut(s) 304
BpmI CTGGAG 1 cut(s) 279
BsaBI GATNNNNATC 1 cut(s) 487
BsaI GGTCTC 1 cut(s) 607
BsaJI CCNNGG 4 cut(s) 256, 295, 469, 592
BsaXI ACNNNNNCTCC 4 cut(s) 370, 400, 606, 636
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 598, 778
Bse1I ACTGG 4 cut(s) 29, 169, 395, 698
Bse3DI GCAATG 1 cut(s) 454
Bse8I GATNNNNATC 1 cut(s) 487
BseBI CCWGG 3 cut(s) 258, 321, 582
BseDI CCNNGG 4 cut(s) 256, 295, 469, 592
BseGI GGATG 2 cut(s) 44, 702
BseJI GATNNNNATC 1 cut(s) 487
BseLI CCNNNNNNNGG 3 cut(s) 146, 598, 778
BseMI GCAATG 1 cut(s) 454
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 4 cut(s) 29, 169, 395, 698
BseRI GAGGAG 1 cut(s) 394
BseXI GCAGC 2 cut(s) 100, 245
BsgI GTGCAG 1 cut(s) 145
BslI CCNNNNNNNGG 3 cut(s) 146, 598, 778
BsmAI GTCTC 2 cut(s) 15, 607
BsmI GAATGC 1 cut(s) 335
Bso31I GGTCTC 1 cut(s) 607
Bsp1407I TGTACA 1 cut(s) 701
Bsp143I GATC 4 cut(s) 65, 156, 313, 775
BspCNI CTCAG 1 cut(s) 295
BspHI TCATGA 1 cut(s) 505
BspMI ACCTGC 1 cut(s) 658
BspPI GGATC 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 607
BsrDI GCAATG 1 cut(s) 454
BsrGI TGTACA 1 cut(s) 701
BsrI ACTGG 4 cut(s) 29, 169, 395, 698
BssECI CCNNGG 4 cut(s) 256, 295, 469, 592
BssMI GATC 4 cut(s) 65, 156, 313, 775
BssNAI GTATAC 1 cut(s) 431
BssSI CACGAG 3 cut(s) 192, 732, 762
BssT1I CCWWGG 2 cut(s) 469, 592
Bst1107I GTATAC 1 cut(s) 431
Bst2BI CACGAG 3 cut(s) 192, 732, 762
Bst2UI CCWGG 3 cut(s) 258, 321, 582
Bst4CI ACNGT 2 cut(s) 435, 558
Bst6I CTCTTC 2 cut(s) 7, 273
BstAPI GCANNNNNTGC 2 cut(s) 444, 750
BstAUI TGTACA 1 cut(s) 701
BstC8I GCNNGC 2 cut(s) 86, 548
BstDEI CTNAG 3 cut(s) 129, 222, 303
BstDSI CCRYGG 1 cut(s) 295
BstENI CCTNNNNNAGG 1 cut(s) 776
BstF5I GGATG 2 cut(s) 44, 702
BstKTI GATC 4 cut(s) 68, 159, 316, 778
BstMAI GTCTC 2 cut(s) 15, 607
BstMBI GATC 4 cut(s) 65, 156, 313, 775
BstMWI GCNNNNNNNGC 7 cut(s) 242, 444, 464, 494, 569, 734, 750
BstNI CCWGG 3 cut(s) 258, 321, 582
BstNSI RCATGY 1 cut(s) 550
BstPAI GACNNNNGTC 1 cut(s) 304
BstSCI CCNGG 3 cut(s) 256, 319, 580
BstV1I GCAGC 2 cut(s) 100, 245
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BstZ17I GTATAC 1 cut(s) 431
BtgI CCRYGG 1 cut(s) 295
BtsCI GGATG 2 cut(s) 44, 702
BtsIMutI CAGTG 2 cut(s) 162, 440
BveI ACCTGC 1 cut(s) 658
Cac8I GCNNGC 2 cut(s) 86, 548
CciI TCATGA 1 cut(s) 505
Cfr13I GGNCC 1 cut(s) 299
CsiI ACCWGGT 1 cut(s) 319
Csp6I GTAC 3 cut(s) 171, 474, 702
CspCI CAANNNNNGTGG 2 cut(s) 193, 228
CviAII CATG 4 cut(s) 103, 311, 506, 547
CviJI RGCY 9 cut(s) 91, 136, 263, 359, 458, 467, 497, 503, 591
CviKI_1 RGCY 9 cut(s) 91, 136, 263, 359, 458, 467, 497, 503, 591
CviQI GTAC 3 cut(s) 171, 474, 702
DdeI CTNAG 3 cut(s) 129, 222, 303
DpnI GATC 4 cut(s) 67, 158, 315, 777
DpnII GATC 4 cut(s) 65, 156, 313, 775
Eam1104I CTCTTC 2 cut(s) 7, 273
EarI CTCTTC 2 cut(s) 7, 273
Eco130I CCWWGG 2 cut(s) 469, 592
Eco31I GGTCTC 1 cut(s) 607
Eco32I GATATC 1 cut(s) 769
Eco47I GGWCC 1 cut(s) 299
EcoNI CCTNNNNNAGG 1 cut(s) 776
EcoRII CCWGG 3 cut(s) 256, 319, 580
EcoRV GATATC 1 cut(s) 769
EcoT14I CCWWGG 2 cut(s) 469, 592
EcoT22I ATGCAT 3 cut(s) 190, 574, 730
ErhI CCWWGG 2 cut(s) 469, 592
FaeI CATG 4 cut(s) 106, 314, 509, 550
FatI CATG 4 cut(s) 102, 310, 505, 546
FbaI TGATCA 2 cut(s) 313, 775
FblI GTMKAC 1 cut(s) 430
Fnu4HI GCNGC 2 cut(s) 89, 234
FokI GGATG 2 cut(s) 51, 709
Fsp4HI GCNGC 2 cut(s) 89, 234
FspBI CTAG 2 cut(s) 464, 593
GluI GCNGC 2 cut(s) 89, 234
GsuI CTGGAG 1 cut(s) 279
Hin1II CATG 4 cut(s) 106, 314, 509, 550
HindIII AAGCTT 2 cut(s) 357, 495
HinfI GANTC 3 cut(s) 305, 529, 715
HphI GGTGA 2 cut(s) 283, 398
Hpy166II GTNNAC 3 cut(s) 299, 431, 702
Hpy188I TCNGA 1 cut(s) 493
Hpy188III TCNNGA 5 cut(s) 192, 506, 732, 779, 804
Hpy8I GTNNAC 3 cut(s) 299, 431, 702
HpyAV CCTTC 2 cut(s) 11, 591
HpyCH4III ACNGT 2 cut(s) 435, 558
HpyF10VI GCNNNNNNNGC 7 cut(s) 242, 444, 464, 494, 569, 734, 750
HpyF3I CTNAG 3 cut(s) 129, 222, 303
Hsp92II CATG 4 cut(s) 106, 314, 509, 550
Ksp22I TGATCA 2 cut(s) 313, 775
Kzo9I GATC 4 cut(s) 65, 156, 313, 775
LmnI GCTCC 2 cut(s) 260, 463
Lsp1109I GCAGC 2 cut(s) 100, 245
LweI GCATC 6 cut(s) 29, 71, 197, 497, 581, 737
MabI ACCWGGT 1 cut(s) 319
MaeI CTAG 2 cut(s) 464, 593
MaeIII GTNAC 3 cut(s) 74, 306, 386
MalI GATC 4 cut(s) 67, 158, 315, 777
MboI GATC 4 cut(s) 65, 156, 313, 775
MboII GAAGA 2 cut(s) 24, 260
MflI RGATCY 1 cut(s) 156
MluCI AATT 6 cut(s) 52, 181, 415, 607, 706, 721
MlyI GAGTC 1 cut(s) 314
MnlI CCTC 5 cut(s) 102, 150, 372, 433, 630
Mph1103I ATGCAT 3 cut(s) 190, 574, 730
MslI CAYNNNNRTG 1 cut(s) 723
MspR9I CCNGG 3 cut(s) 258, 321, 582
Mva1269I GAATGC 1 cut(s) 335
MvaI CCWGG 3 cut(s) 258, 321, 582
MwoI GCNNNNNNNGC 7 cut(s) 242, 444, 464, 494, 569, 734, 750
NdeII GATC 4 cut(s) 65, 156, 313, 775
NlaIII CATG 4 cut(s) 106, 314, 509, 550
NmuCI GTSAC 2 cut(s) 306, 386
NsiI ATGCAT 3 cut(s) 190, 574, 730
NspI RCATGY 1 cut(s) 550
PaeI GCATGC 1 cut(s) 550
PagI TCATGA 1 cut(s) 505
PaqCI CACCTGC 1 cut(s) 658
PctI GAATGC 1 cut(s) 335
PfeI GAWTC 2 cut(s) 529, 715
PkrI GCNGC 2 cut(s) 90, 235
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
PshAI GACNNNNGTC 1 cut(s) 304
Psp6I CCWGG 3 cut(s) 256, 319, 580
PspGI CCWGG 3 cut(s) 256, 319, 580
PspPI GGNCC 1 cut(s) 299
PsuI RGATCY 1 cut(s) 156
RsaI GTAC 3 cut(s) 172, 475, 703
RsaNI GTAC 3 cut(s) 171, 474, 702
RseI CAYNNNNRTG 1 cut(s) 723
SatI GCNGC 2 cut(s) 89, 234
Sau3AI GATC 4 cut(s) 65, 156, 313, 775
Sau96I GGNCC 1 cut(s) 299
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 3 cut(s) 258, 321, 582
SetI ASST 8 cut(s) 265, 304, 322, 361, 460, 499, 652, 752
SexAI ACCWGGT 1 cut(s) 319
SfaNI GCATC 6 cut(s) 29, 71, 197, 497, 581, 737
SinI GGWCC 1 cut(s) 299
SmiMI CAYNNNNRTG 1 cut(s) 723
SphI GCATGC 1 cut(s) 550
Sse9I AATT 6 cut(s) 52, 181, 415, 607, 706, 721
SspMI CTAG 2 cut(s) 464, 593
StyD4I CCNGG 3 cut(s) 256, 319, 580
StyI CCWWGG 2 cut(s) 469, 592
TaaI ACNGT 2 cut(s) 435, 558
TasI AATT 6 cut(s) 52, 181, 415, 607, 706, 721
TatI WGTACW 2 cut(s) 170, 701
TfiI GAWTC 2 cut(s) 529, 715
TscAI CASTG 2 cut(s) 169, 440
TseFI GTSAC 2 cut(s) 306, 386
TseI GCWGC 2 cut(s) 88, 233
Tsp45I GTSAC 2 cut(s) 306, 386
TspDTI ATGAA 3 cut(s) 356, 465, 522
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 2 cut(s) 169, 440
VpaK11BI GGWCC 1 cut(s) 299
XagI CCTNNNNNAGG 1 cut(s) 776
XceI RCATGY 1 cut(s) 550
XcmI CCANNNNNNNNNTGG 1 cut(s) 129
XmaJI CCTAGG 1 cut(s) 592
XmiI GTMKAC 1 cut(s) 430
XspI CTAG 2 cut(s) 464, 593
Zsp2I ATGCAT 3 cut(s) 190, 574, 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.