Rroxscaffold_2G00142980

Zn-finger in Ran binding protein and others

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008648
Physical Location & Seq
Forward (+)
81035241 .. 81038832
3592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00142980.1

Sequence Viewer

Length: 957 bp
ATGGCCGAAGGAAGAGAAGGGGATTGGGAATGCGGTGGATGCAGAAACCGAAACTACGCCTTCAGATCCTTCTGCAATCGCTGCCGCCAGCCTCGTCTCCTGGTCGACACCAAAACCCCCGCAGACTCCAAATGGCTCCCCCGTATCGGCGATTGGATCTGCACCGGTTGCACTAACAACAATTATGCATCAAGAGAGAAGTGCAAAAAGTGCGGACAAAATAAGGAGTTAGCAGCAATGCCGGCCATTGCAATGCCCGGAACTTCTCTCCCGGCTTATTCAAATTATTTGGGCCGAGGCCAAGGAGGATTGGATCCAAAGATGAGTTTTGGAGTGATGGGGAATGGTCCTCCACAGCAGCCGTTTCCTCTCAACTCGAACTGGCCAGGGGTTGATAAGTATGGAGTCCAGCCGGGTTCTGCTTTGCCCGTAGGTGGAATCCATAATGCTGGACTTCCCTATGCAAACTCTGGTAATGAGATTCCGAAAGGATTTCGCTCTGGTGACTGGATATGTAGCTGTGGTTTTCATAATTACCAGTCTCGTACCCAGTGCAAAAAGTGCAATGCCTTTCCTCCAGCTCTTGGAATCAAACGGTTAGCATCTGAAGAGTTTGTTAACGACTGGGATAACAAGAGATTGAACTTGGGACATGCAATTGGGCAGCAGCAATCTTATCCTGGGTTTGAGGTGTTAGGGGCCAGGGGTCACCCCATAGCTGGACCTTACAGTCATTATCCTCGTCTGAACTCAGTTGGGGCTCCAAATTTGCAAGTCCCCATGCCATTAACACAGCATGCAGCGACACCTACACTCTTTGGGAAAGGAGCAAAGCAATGGCGTAATGGGGATTGGATGTGCACAAATTGCGACAATCACAATTATGCATCTCGATTAAGTTGCAATAGATGCAAGACCGAAAGAGATGCAGCTGCGCAGCCAGTCAATGCCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005642 GO:0005643 GO:0005737 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006403 GO:0006405 GO:0006406 GO:0006464 GO:0006508 GO:0006511 GO:0006606 GO:0006607 GO:0006611 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007088 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0010564 GO:0010638 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016740 GO:0016925 GO:0017016 GO:0017038 GO:0018193 GO:0018205 GO:0019538 GO:0019787 GO:0019789 GO:0019899 GO:0019941 GO:0022402 GO:0030163 GO:0031090 GO:0031267 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032446 GO:0032886 GO:0032991 GO:0033036 GO:0033043 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0042175 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044614 GO:0044615 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0045787 GO:0045840 GO:0045931 GO:0046602 GO:0046604 GO:0046605 GO:0046607 GO:0046907 GO:0048518 GO:0048522 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051020 GO:0051028 GO:0051128 GO:0051130 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051493 GO:0051495 GO:0051603 GO:0051640 GO:0051641 GO:0051642 GO:0051649 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0061842 GO:0065007 GO:0070507 GO:0070647 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0090068 GO:0098589 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903047
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

318

Amino Acids

34.83

Weight (kDa)

9.17

Isoelectric Point (pI)

55.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 281 - 308 2.8e-06 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 729
Acc16I TGCGCA 1 cut(s) 936
AccB7I CCANNNNNTGG 1 cut(s) 584
AccI GTMKAC 1 cut(s) 105
AciI CCGC 4 cut(s) 33, 85, 120, 213
AclWI GGATC 4 cut(s) 60, 164, 308, 321
AcoI YGGCCR 3 cut(s) 3, 243, 383
AcsI RAATTY 1 cut(s) 766
AcuI CTGAAG 2 cut(s) 46, 627
AfaI GTAC 1 cut(s) 547
AfiI CCNNNNNNNGG 4 cut(s) 146, 434, 584, 719
AgeI ACCGGT 1 cut(s) 164
AgsI TTSAA 2 cut(s) 282, 643
AjnI CCWGG 4 cut(s) 99, 385, 679, 701
AluBI AGCT 4 cut(s) 519, 581, 719, 932
AluI AGCT 4 cut(s) 519, 581, 719, 932
Alw21I GWGCWC 1 cut(s) 863
Alw26I GTCTC 2 cut(s) 101, 546
Alw44I GTGCAC 1 cut(s) 859
AlwI GGATC 4 cut(s) 60, 164, 308, 321
AoxI GGCC 6 cut(s) 3, 243, 292, 298, 383, 699
ApaLI GTGCAC 1 cut(s) 859
ApeKI GCWGC 9 cut(s) 81, 233, 358, 664, 667, 800, 929, 932, 937
ApoI RAATTY 1 cut(s) 766
AsiGI ACCGGT 1 cut(s) 164
AspLEI GCGC 1 cut(s) 937
AspS9I GGNCC 4 cut(s) 292, 347, 699, 722
AsuC2I CCSGG 3 cut(s) 258, 272, 414
AsuHPI GGTGA 2 cut(s) 515, 701
AvaII GGWCC 2 cut(s) 347, 722
BaeGI GKGCMC 1 cut(s) 863
BalI TGGCCA 1 cut(s) 385
BamHI GGATCC 1 cut(s) 313
BanII GRGCYC 1 cut(s) 763
Bbv12I GWGCWC 1 cut(s) 863
BbvI GCAGC 9 cut(s) 68, 245, 370, 676, 679, 812, 919, 941, 949
BccI CCATC 1 cut(s) 331
BceAI ACGGC 1 cut(s) 346
BcgI CGANNNNNNTGC 4 cut(s) 882, 908, 916, 942
BciT130I CCWGG 4 cut(s) 101, 387, 681, 703
BcnI CCSGG 3 cut(s) 258, 272, 414
BcoDI GTCTC 2 cut(s) 101, 546
Bme1390I CCNGG 7 cut(s) 101, 258, 272, 387, 414, 681, 703
Bme18I GGWCC 2 cut(s) 347, 722
BmgT120I GGNCC 4 cut(s) 292, 347, 699, 722
BmiI GGNNCC 4 cut(s) 137, 315, 700, 762
BmrFI CCNGG 7 cut(s) 101, 258, 272, 387, 414, 681, 703
BmrI ACTGGG 2 cut(s) 544, 634
BmsI GCATC 6 cut(s) 29, 197, 611, 896, 899, 916
BmuI ACTGGG 2 cut(s) 544, 634
BpmI CTGGAG 1 cut(s) 561
BpuMI CCSGG 3 cut(s) 258, 272, 414
BsaJI CCNNGG 5 cut(s) 295, 301, 386, 680, 702
BsaWI WCCGGW 1 cut(s) 164
Bsc4I CCNNNNNNNGG 4 cut(s) 146, 434, 584, 719
Bse118I RCCGGY 2 cut(s) 164, 241
Bse1I ACTGG 6 cut(s) 386, 512, 538, 550, 629, 941
Bse3DI GCAATG 5 cut(s) 243, 246, 258, 571, 842
BseBI CCWGG 4 cut(s) 101, 387, 681, 703
BseDI CCNNGG 5 cut(s) 295, 301, 386, 680, 702
BseGI GGATG 2 cut(s) 44, 861
BseLI CCNNNNNNNGG 4 cut(s) 146, 434, 584, 719
BseMI GCAATG 5 cut(s) 243, 246, 258, 571, 842
BseMII CTCAG 1 cut(s) 765
BseNI ACTGG 6 cut(s) 386, 512, 538, 550, 629, 941
BseSI GKGCMC 1 cut(s) 863
BseXI GCAGC 9 cut(s) 68, 245, 370, 676, 679, 812, 919, 941, 949
BsgI GTGCAG 1 cut(s) 145
BshFI GGCC 6 cut(s) 5, 245, 294, 300, 385, 701
BshTI ACCGGT 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 863
BsiSI CCGG 5 cut(s) 165, 242, 258, 272, 413
BslFI GGGAC 2 cut(s) 663, 761
BslI CCNNNNNNNGG 4 cut(s) 146, 434, 584, 719
BsmAI GTCTC 2 cut(s) 101, 546
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 2 cut(s) 663, 761
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 6 cut(s) 5, 245, 294, 300, 385, 701
Bsp1286I GDGCHC 2 cut(s) 763, 863
Bsp143I GATC 3 cut(s) 65, 156, 313
BspACI CCGC 4 cut(s) 33, 85, 120, 213
BspANI GGCC 6 cut(s) 5, 245, 294, 300, 385, 701
BspCNI CTCAG 1 cut(s) 764
BspLI GGNNCC 4 cut(s) 137, 315, 700, 762
BspPI GGATC 4 cut(s) 60, 164, 308, 321
BsrDI GCAATG 5 cut(s) 243, 246, 258, 571, 842
BsrFI RCCGGY 2 cut(s) 164, 241
BsrI ACTGG 6 cut(s) 386, 512, 538, 550, 629, 941
BssAI RCCGGY 2 cut(s) 164, 241
BssECI CCNNGG 5 cut(s) 295, 301, 386, 680, 702
BssMI GATC 3 cut(s) 65, 156, 313
BssT1I CCWWGG 1 cut(s) 301
Bst2UI CCWGG 4 cut(s) 101, 387, 681, 703
Bst4CI ACNGT 2 cut(s) 597, 731
Bst6I CTCTTC 2 cut(s) 7, 603
BstAPI GCANNNNNTGC 6 cut(s) 81, 168, 210, 561, 867, 909
BstC8I GCNNGC 3 cut(s) 89, 243, 798
BstDEI CTNAG 1 cut(s) 751
BstEII GGTNACC 1 cut(s) 707
BstF5I GGATG 2 cut(s) 44, 861
BstHHI GCGC 1 cut(s) 937
BstKTI GATC 3 cut(s) 68, 159, 316
BstMAI GTCTC 2 cut(s) 101, 546
BstMBI GATC 3 cut(s) 65, 156, 313
BstMWI GCNNNNNNNGC 8 cut(s) 39, 81, 168, 210, 242, 561, 867, 909
BstNI CCWGG 4 cut(s) 101, 387, 681, 703
BstNSI RCATGY 2 cut(s) 656, 800
BstPI GGTNACC 1 cut(s) 707
BstSCI CCNGG 7 cut(s) 99, 256, 270, 385, 412, 679, 701
BstSLI GKGCMC 1 cut(s) 863
BstV1I GCAGC 9 cut(s) 68, 245, 370, 676, 679, 812, 919, 941, 949
BstX2I RGATCY 3 cut(s) 65, 156, 313
BstXI CCANNNNNNTGG 1 cut(s) 449
BstYI RGATCY 3 cut(s) 65, 156, 313
BsuRI GGCC 6 cut(s) 5, 245, 294, 300, 385, 701
BtsCI GGATG 2 cut(s) 44, 861
BtsIMutI CAGTG 1 cut(s) 557
Cac8I GCNNGC 3 cut(s) 89, 243, 798
CfoI GCGC 1 cut(s) 937
Cfr10I RCCGGY 2 cut(s) 164, 241
Cfr13I GGNCC 4 cut(s) 292, 347, 699, 722
Csp6I GTAC 1 cut(s) 546
CspAI ACCGGT 1 cut(s) 164
CviAII CATG 4 cut(s) 653, 781, 797, 952
CviQI GTAC 1 cut(s) 546
DdeI CTNAG 1 cut(s) 751
DpnI GATC 3 cut(s) 67, 158, 315
DpnII GATC 3 cut(s) 65, 156, 313
DrdI GACNNNNNNGTC 1 cut(s) 729
DseDI GACNNNNNNGTC 1 cut(s) 729
EaeI YGGCCR 3 cut(s) 3, 243, 383
Eam1104I CTCTTC 2 cut(s) 7, 603
EarI CTCTTC 2 cut(s) 7, 603
Eco130I CCWWGG 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 763
Eco47I GGWCC 2 cut(s) 347, 722
Eco57I CTGAAG 2 cut(s) 46, 627
Eco91I GGTNACC 1 cut(s) 707
EcoO65I GGTNACC 1 cut(s) 707
EcoRII CCWGG 4 cut(s) 99, 385, 679, 701
EcoT14I CCWWGG 1 cut(s) 301
EcoT22I ATGCAT 2 cut(s) 190, 889
EcoT38I GRGCYC 1 cut(s) 763
ErhI CCWWGG 1 cut(s) 301
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 4 cut(s) 656, 784, 800, 955
FaqI GGGAC 2 cut(s) 663, 761
FatI CATG 4 cut(s) 652, 780, 796, 951
FauI CCCGC 1 cut(s) 127
FblI GTMKAC 1 cut(s) 105
FokI GGATG 2 cut(s) 51, 868
FriOI GRGCYC 1 cut(s) 763
FspI TGCGCA 1 cut(s) 936
GlaI GCGC 1 cut(s) 936
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 6 cut(s) 5, 245, 294, 300, 385, 701
HapII CCGG 5 cut(s) 165, 242, 258, 272, 413
HhaI GCGC 1 cut(s) 937
Hin1II CATG 4 cut(s) 656, 784, 800, 955
Hin6I GCGC 1 cut(s) 935
HinP1I GCGC 1 cut(s) 935
HincII GTYRAC 2 cut(s) 106, 619
HindII GTYRAC 2 cut(s) 106, 619
HinfI GANTC 5 cut(s) 125, 405, 438, 481, 588
HpaI GTTAAC 1 cut(s) 619
HpaII CCGG 5 cut(s) 165, 242, 258, 272, 413
HphI GGTGA 2 cut(s) 515, 701
Hpy166II GTNNAC 3 cut(s) 106, 619, 861
Hpy188I TCNGA 4 cut(s) 65, 486, 607, 747
Hpy188III TCNNGA 2 cut(s) 192, 891
Hpy8I GTNNAC 3 cut(s) 106, 619, 861
HpyAV CCTTC 3 cut(s) 11, 70, 79
HpyCH4III ACNGT 2 cut(s) 597, 731
HpyF10VI GCNNNNNNNGC 8 cut(s) 39, 81, 168, 210, 242, 561, 867, 909
HpyF3I CTNAG 1 cut(s) 751
Hsp92II CATG 4 cut(s) 656, 784, 800, 955
HspAI GCGC 1 cut(s) 935
KroI GCCGGC 1 cut(s) 241
KroNI GCCGGC 1 cut(s) 243
KspAI GTTAAC 1 cut(s) 619
Kzo9I GATC 3 cut(s) 65, 156, 313
LmnI GCTCC 3 cut(s) 141, 766, 827
Lsp1109I GCAGC 9 cut(s) 68, 245, 370, 676, 679, 812, 919, 941, 949
LweI GCATC 6 cut(s) 29, 197, 611, 896, 899, 916
MaeIII GTNAC 2 cut(s) 503, 707
MalI GATC 3 cut(s) 67, 158, 315
MboI GATC 3 cut(s) 65, 156, 313
MboII GAAGA 2 cut(s) 24, 620
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 3 cut(s) 65, 156, 313
MhlI GDGCHC 2 cut(s) 763, 863
MlsI TGGCCA 1 cut(s) 385
MluCI AATT 7 cut(s) 181, 283, 532, 657, 766, 865, 880
MluNI TGGCCA 1 cut(s) 385
MlyI GAGTC 2 cut(s) 119, 414
MnlI CCTC 8 cut(s) 102, 290, 299, 360, 378, 585, 682, 750
Mox20I TGGCCA 1 cut(s) 385
Mph1103I ATGCAT 2 cut(s) 190, 889
MroNI GCCGGC 1 cut(s) 241
MscI TGGCCA 1 cut(s) 385
MseI TTAA 3 cut(s) 618, 788, 896
MslI CAYNNNNRTG 2 cut(s) 251, 882
Msp20I TGGCCA 1 cut(s) 385
MspA1I CMGCKG 1 cut(s) 932
MspI CCGG 5 cut(s) 165, 242, 258, 272, 413
MspR9I CCNGG 7 cut(s) 101, 258, 272, 387, 414, 681, 703
MunI CAATTG 1 cut(s) 657
Mva1269I GAATGC 1 cut(s) 35
MvaI CCWGG 4 cut(s) 101, 387, 681, 703
MwoI GCNNNNNNNGC 8 cut(s) 39, 81, 168, 210, 242, 561, 867, 909
NaeI GCCGGC 1 cut(s) 243
NciI CCSGG 3 cut(s) 258, 272, 414
NdeII GATC 3 cut(s) 65, 156, 313
NgoMIV GCCGGC 1 cut(s) 241
NlaIII CATG 4 cut(s) 656, 784, 800, 955
NlaIV GGNNCC 4 cut(s) 137, 315, 700, 762
NmeAIII GCCGAG 1 cut(s) 320
NmuCI GTSAC 2 cut(s) 503, 707
NsbI TGCGCA 1 cut(s) 936
NsiI ATGCAT 2 cut(s) 190, 889
NspI RCATGY 2 cut(s) 656, 800
PaeI GCATGC 1 cut(s) 800
PctI GAATGC 1 cut(s) 35
PdiI GCCGGC 1 cut(s) 243
PfeI GAWTC 3 cut(s) 438, 481, 588
PflMI CCANNNNNTGG 1 cut(s) 584
PinAI ACCGGT 1 cut(s) 164
PleI GAGTC 2 cut(s) 119, 413
PpsI GAGTC 2 cut(s) 119, 413
Psp6I CCWGG 4 cut(s) 99, 385, 679, 701
PspEI GGTNACC 1 cut(s) 707
PspGI CCWGG 4 cut(s) 99, 385, 679, 701
PspN4I GGNNCC 4 cut(s) 137, 315, 700, 762
PspPI GGNCC 4 cut(s) 292, 347, 699, 722
PsuI RGATCY 3 cut(s) 65, 156, 313
PvuII CAGCTG 1 cut(s) 932
RsaI GTAC 1 cut(s) 547
RsaNI GTAC 1 cut(s) 546
RseI CAYNNNNRTG 2 cut(s) 251, 882
SalI GTCGAC 1 cut(s) 104
SaqAI TTAA 3 cut(s) 618, 788, 896
Sau3AI GATC 3 cut(s) 65, 156, 313
Sau96I GGNCC 4 cut(s) 292, 347, 699, 722
SchI GAGTC 2 cut(s) 119, 414
ScrFI CCNGG 7 cut(s) 101, 258, 272, 387, 414, 681, 703
SduI GDGCHC 2 cut(s) 763, 863
SetI ASST 8 cut(s) 436, 521, 583, 693, 721, 727, 811, 934
SfaNI GCATC 6 cut(s) 29, 197, 611, 896, 899, 916
SinI GGWCC 2 cut(s) 347, 722
SmiMI CAYNNNNRTG 2 cut(s) 251, 882
SphI GCATGC 1 cut(s) 800
Sse9I AATT 7 cut(s) 181, 283, 532, 657, 766, 865, 880
SsiI CCGC 4 cut(s) 33, 85, 120, 213
StyD4I CCNGG 7 cut(s) 99, 256, 270, 385, 412, 679, 701
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 2 cut(s) 597, 731
TaqI TCGA 3 cut(s) 105, 377, 892
TaqII GACCGA 1 cut(s) 932
TasI AATT 7 cut(s) 181, 283, 532, 657, 766, 865, 880
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 3 cut(s) 438, 481, 588
Tru1I TTAA 3 cut(s) 618, 788, 896
Tru9I TTAA 3 cut(s) 618, 788, 896
TscAI CASTG 1 cut(s) 557
TseFI GTSAC 2 cut(s) 503, 707
TseI GCWGC 9 cut(s) 81, 233, 358, 664, 667, 800, 929, 932, 937
Tsp45I GTSAC 2 cut(s) 503, 707
TspDTI ATGAA 1 cut(s) 518
TspRI CASTG 1 cut(s) 557
Van91I CCANNNNNTGG 1 cut(s) 584
VneI GTGCAC 1 cut(s) 859
VpaK11BI GGWCC 2 cut(s) 347, 722
XapI RAATTY 1 cut(s) 766
XceI RCATGY 2 cut(s) 656, 800
XmiI GTMKAC 1 cut(s) 105
Zsp2I ATGCAT 2 cut(s) 190, 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.