pycom02g10480

Zn-finger in Ran binding protein and others

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0008648
Physical Location & Seq
Reverse (-)
7276781 .. 7277624
844 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g10480.2

Sequence Viewer

Length: 471 bp
ATGCTCACTTTTTTACGTCCTCATTTTTCGTATAAAGCTCTTGGAATGAAGCGATTAGCATCCGAAGAGCTTGTTCATGACTGGGATAACAAGAGACTGAACGTAGGACGTTATCCTTTGCTTTCTTCTCCTCCTCCTAGTTGTTTCCTTGTTCTTTTCACTAAATTGCAGACAGTTGGGCAGCAGCAATCCTATCCTGGGTTTGAGCGAGTGGTAGGGACCAGTGGTAACCTCGCAACTGGACCTTACGCTCCTTATCATCCCAATATAAGCTCAGGCATGGCTCTGAATTTGCAAGTGCCCATGCCATTCACACAGCAAGCAATGACACCTGCACTCCTTGGAAAAGGAGCAAAGCAATGGCGTGATGGGGATTGGATGTGCACAAATTGCAACAATCATAATTATGCATCTCGATTGAACTGCAGTAGGTTAGTGTATACACTAAGCATTGATTCCTCTTTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005642 GO:0005643 GO:0005737 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006403 GO:0006405 GO:0006406 GO:0006464 GO:0006508 GO:0006511 GO:0006606 GO:0006607 GO:0006611 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007088 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0010564 GO:0010638 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016740 GO:0016925 GO:0017016 GO:0017038 GO:0018193 GO:0018205 GO:0019538 GO:0019787 GO:0019789 GO:0019899 GO:0019941 GO:0022402 GO:0030163 GO:0031090 GO:0031267 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032446 GO:0032886 GO:0032991 GO:0033036 GO:0033043 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0042175 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044614 GO:0044615 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0045787 GO:0045840 GO:0045931 GO:0046602 GO:0046604 GO:0046605 GO:0046607 GO:0046907 GO:0048518 GO:0048522 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051020 GO:0051028 GO:0051128 GO:0051130 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051493 GO:0051495 GO:0051603 GO:0051640 GO:0051641 GO:0051642 GO:0051649 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0061842 GO:0065007 GO:0070507 GO:0070647 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0090068 GO:0098589 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903047
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

157

Amino Acids

17.45

Weight (kDa)

9.33

Isoelectric Point (pI)

61.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 340
Acc36I ACCTGC 1 cut(s) 340
AccI GTMKAC 1 cut(s) 440
AcsI RAATTY 1 cut(s) 289
AfiI CCNNNNNNNGG 1 cut(s) 198
AgsI TTSAA 1 cut(s) 421
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 3 cut(s) 38, 70, 273
AluI AGCT 3 cut(s) 38, 70, 273
Alw21I GWGCWC 1 cut(s) 386
Alw26I GTCTC 1 cut(s) 88
Alw44I GTGCAC 1 cut(s) 382
ApaLI GTGCAC 1 cut(s) 382
ApeKI GCWGC 2 cut(s) 181, 184
ApoI RAATTY 1 cut(s) 289
AspS9I GGNCC 2 cut(s) 219, 242
AvaII GGWCC 2 cut(s) 219, 242
BaeGI GKGCMC 2 cut(s) 303, 386
Bbv12I GWGCWC 1 cut(s) 386
BbvI GCAGC 2 cut(s) 193, 196
BccI CCATC 1 cut(s) 362
BcgI CGANNNNNNTGC 2 cut(s) 405, 439
BciT130I CCWGG 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 424
BfuAI ACCTGC 1 cut(s) 340
BisI GCNGC 2 cut(s) 182, 185
BlsI GCNGC 2 cut(s) 183, 186
Bme1390I CCNGG 1 cut(s) 198
Bme18I GGWCC 2 cut(s) 219, 242
BmgT120I GGNCC 2 cut(s) 219, 242
BmiI GGNNCC 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 198
BmrI ACTGGG 1 cut(s) 91
BmsI GCATC 2 cut(s) 68, 419
BmuI ACTGGG 1 cut(s) 91
Bpu10I CCTNAGC 1 cut(s) 274
BsaBI GATNNNNATC 1 cut(s) 58
BsaJI CCNNGG 2 cut(s) 197, 340
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bsc4I CCNNNNNNNGG 1 cut(s) 198
Bse1I ACTGG 3 cut(s) 86, 222, 244
Bse3DI GCAATG 2 cut(s) 330, 365
Bse8I GATNNNNATC 1 cut(s) 58
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 2 cut(s) 197, 340
BseGI GGATG 3 cut(s) 59, 259, 384
BseJI GATNNNNATC 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 198
BseMI GCAATG 2 cut(s) 330, 365
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 3 cut(s) 86, 222, 244
BseRI GAGGAG 2 cut(s) 120, 123
BseSI GKGCMC 2 cut(s) 303, 386
BseXI GCAGC 2 cut(s) 193, 196
BsgI GTGCAG 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 386
BslFI GGGAC 1 cut(s) 232
BslI CCNNNNNNNGG 1 cut(s) 198
BsmAI GTCTC 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 232
Bsp1286I GDGCHC 2 cut(s) 303, 386
BspCNI CTCAG 1 cut(s) 287
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 220
BspMAI CTGCAG 1 cut(s) 428
BspMI ACCTGC 1 cut(s) 340
BspQI GCTCTTC 1 cut(s) 60
BsrDI GCAATG 2 cut(s) 330, 365
BsrI ACTGG 3 cut(s) 86, 222, 244
BssECI CCNNGG 2 cut(s) 197, 340
BssNAI GTATAC 1 cut(s) 441
BssT1I CCWWGG 1 cut(s) 340
Bst1107I GTATAC 1 cut(s) 441
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 1 cut(s) 60
BstAPI GCANNNNNTGC 1 cut(s) 390
BstC8I GCNNGC 1 cut(s) 321
BstDEI CTNAG 2 cut(s) 274, 446
BstEII GGTNACC 1 cut(s) 227
BstF5I GGATG 3 cut(s) 59, 259, 384
BstMAI GTCTC 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 390
BstNI CCWGG 1 cut(s) 198
BstPI GGTNACC 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 196
BstSFI CTRYAG 1 cut(s) 424
BstSLI GKGCMC 2 cut(s) 303, 386
BstV1I GCAGC 2 cut(s) 193, 196
BstZ17I GTATAC 1 cut(s) 441
BtsCI GGATG 3 cut(s) 59, 259, 384
BtsIMutI CAGTG 1 cut(s) 229
BveI ACCTGC 1 cut(s) 340
Cac8I GCNNGC 1 cut(s) 321
CciI TCATGA 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 219, 242
CviAII CATG 3 cut(s) 77, 280, 304
CviJI RGCY 4 cut(s) 38, 70, 273, 284
CviKI_1 RGCY 4 cut(s) 38, 70, 273, 284
DdeI CTNAG 2 cut(s) 274, 446
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 340
Eco47I GGWCC 2 cut(s) 219, 242
Eco91I GGTNACC 1 cut(s) 227
EcoO65I GGTNACC 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 340
EcoT22I ATGCAT 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 340
FaeI CATG 3 cut(s) 80, 283, 307
FaiI YATR 8 cut(s) 33, 78, 269, 281, 305, 402, 408, 441
FaqI GGGAC 1 cut(s) 232
FatI CATG 3 cut(s) 76, 279, 303
FblI GTMKAC 1 cut(s) 440
Fnu4HI GCNGC 2 cut(s) 182, 185
FokI GGATG 3 cut(s) 46, 246, 391
Fsp4HI GCNGC 2 cut(s) 182, 185
FspBI CTAG 1 cut(s) 138
GluI GCNGC 2 cut(s) 182, 185
Hin1II CATG 3 cut(s) 80, 283, 307
HinfI GANTC 1 cut(s) 455
Hpy166II GTNNAC 2 cut(s) 384, 441
Hpy188I TCNGA 2 cut(s) 64, 288
Hpy188III TCNNGA 2 cut(s) 77, 414
Hpy8I GTNNAC 2 cut(s) 384, 441
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 3 cut(s) 16, 102, 109
HpyCH4V TGCA 7 cut(s) 169, 295, 335, 384, 393, 410, 426
HpyF10VI GCNNNNNNNGC 1 cut(s) 390
HpyF3I CTNAG 2 cut(s) 274, 446
HpySE526I ACGT 3 cut(s) 16, 102, 109
Hsp92II CATG 3 cut(s) 80, 283, 307
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 2 cut(s) 256, 350
LpnPI CCDG 7 cut(s) 67, 183, 210, 225, 235, 261, 345
Lsp1109I GCAGC 2 cut(s) 193, 196
LweI GCATC 2 cut(s) 68, 419
MaeI CTAG 1 cut(s) 138
MaeII ACGT 3 cut(s) 16, 102, 109
MaeIII GTNAC 1 cut(s) 227
MboII GAAGA 2 cut(s) 77, 117
MhlI GDGCHC 2 cut(s) 303, 386
MluCI AATT 4 cut(s) 164, 289, 388, 403
MnlI CCTC 5 cut(s) 30, 141, 144, 242, 469
Mph1103I ATGCAT 1 cut(s) 412
MseI TTAA 1 cut(s) 469
MslI CAYNNNNRTG 1 cut(s) 405
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 390
NlaIII CATG 3 cut(s) 80, 283, 307
NlaIV GGNNCC 1 cut(s) 220
NsiI ATGCAT 1 cut(s) 412
PagI TCATGA 1 cut(s) 76
PaqCI CACCTGC 1 cut(s) 340
PciSI GCTCTTC 1 cut(s) 60
PfeI GAWTC 1 cut(s) 455
PkrI GCNGC 2 cut(s) 183, 186
Psp6I CCWGG 1 cut(s) 196
PspEI GGTNACC 1 cut(s) 227
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 220
PspPI GGNCC 2 cut(s) 219, 242
PstI CTGCAG 1 cut(s) 428
RseI CAYNNNNRTG 1 cut(s) 405
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 469
SatI GCNGC 2 cut(s) 182, 185
Sau96I GGNCC 2 cut(s) 219, 242
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 2 cut(s) 303, 386
SfaNI GCATC 2 cut(s) 68, 419
SfcI CTRYAG 1 cut(s) 424
SinI GGWCC 2 cut(s) 219, 242
SmiMI CAYNNNNRTG 1 cut(s) 405
Sse9I AATT 4 cut(s) 164, 289, 388, 403
SspMI CTAG 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 196
StyI CCWWGG 1 cut(s) 340
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 3 cut(s) 19, 105, 112
TaqI TCGA 1 cut(s) 415
TasI AATT 4 cut(s) 164, 289, 388, 403
TfiI GAWTC 1 cut(s) 455
Tru1I TTAA 1 cut(s) 469
Tru9I TTAA 1 cut(s) 469
TscAI CASTG 1 cut(s) 229
TseI GCWGC 2 cut(s) 181, 184
TspDTI ATGAA 2 cut(s) 62, 65
TspRI CASTG 1 cut(s) 229
VneI GTGCAC 1 cut(s) 382
VpaK11BI GGWCC 2 cut(s) 219, 242
XapI RAATTY 1 cut(s) 289
XmiI GTMKAC 1 cut(s) 440
XspI CTAG 1 cut(s) 138
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.