Rh2DG134400

Zn-finger in Ran binding protein and others

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008648
Physical Location & Seq
Reverse (-)
11346090 .. 11349168
3079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG134400.1

Sequence Viewer

Length: 720 bp
ATGCCGGCCATTGCAATGCCCGGAACTTCTCTCCCGGCTTATTCAAATTATTTGGGCCGAGGCCAAGGAGGATTGGATCCAAAGATGAGTTTTGGAGTGATGGGGAATGGTCCTCCACAGCAGCCGTTTCCTCTGAACTCGAACTGGCCAGGGGTTGATAAGTATGGAGTCCAGCCGGGTTCTGCTTTGCCCGTAGGTGGAATCCATAATGCTGGACTTCCGTATGCAAACCCTGGTAATGAGATTCCGAAAGGATTTCGCTCTGGTGACTGGATATGTAGCTGTGGTTTTCATAATTACCAGTCTCGTACCCAGTGCAAAAGGTGCAATGCCTTTCCTCCAGCTCTTGGAATCAAACGGTTAGCATCTGAAGAGTTTGTTAATGATTGGGATAACAAGAGATTGAACTTGGGACATGCAATTGGGCAGCAGCAATCTTATCCTGGGTTTGAGGTGGTAGGGGCCAGGGGTCATCCCATAGCTGGACCTTACGGTCATTATCCTGGTCTGAACTCAGTTGGGGCTCCAAATTTGCAAGTCCCCATGCCATTAACACAGCATGCAACGACACCTACACTCTTTGGGAAAGGAGCAAAGCAATGGCGTAATGGGGATTGGATGTGCACAAATTGCGACAATCACAATTATGCATCTCGATTAAGTTGCAATAGATGCAAGACCGAAAGAGATGCAGCTGCTCAGCCAGTCAATGTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005642 GO:0005643 GO:0005737 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006403 GO:0006405 GO:0006406 GO:0006464 GO:0006508 GO:0006511 GO:0006606 GO:0006607 GO:0006611 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007088 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0010564 GO:0010638 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016740 GO:0016925 GO:0017016 GO:0017038 GO:0018193 GO:0018205 GO:0019538 GO:0019787 GO:0019789 GO:0019899 GO:0019941 GO:0022402 GO:0030163 GO:0031090 GO:0031267 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032446 GO:0032886 GO:0032991 GO:0033036 GO:0033043 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0042175 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044614 GO:0044615 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0045787 GO:0045840 GO:0045931 GO:0046602 GO:0046604 GO:0046605 GO:0046607 GO:0046907 GO:0048518 GO:0048522 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051020 GO:0051028 GO:0051128 GO:0051130 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051493 GO:0051495 GO:0051603 GO:0051640 GO:0051641 GO:0051642 GO:0051649 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0061842 GO:0065007 GO:0070507 GO:0070647 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0090068 GO:0098589 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903047
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

239

Amino Acids

25.75

Weight (kDa)

9.04

Isoelectric Point (pI)

58.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 202 - 229 1.9e-06 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 492
AccB7I CCANNNNNTGG 1 cut(s) 347
AclWI GGATC 2 cut(s) 71, 84
AcoI YGGCCR 2 cut(s) 6, 146
AcsI RAATTY 1 cut(s) 529
AcuI CTGAAG 1 cut(s) 390
AfaI GTAC 1 cut(s) 310
AfiI CCNNNNNNNGG 3 cut(s) 197, 347, 482
AgsI TTSAA 2 cut(s) 45, 406
AjnI CCWGG 5 cut(s) 148, 232, 442, 464, 502
AluBI AGCT 4 cut(s) 282, 344, 482, 695
AluI AGCT 4 cut(s) 282, 344, 482, 695
Alw21I GWGCWC 1 cut(s) 626
Alw26I GTCTC 1 cut(s) 309
Alw44I GTGCAC 1 cut(s) 622
AlwI GGATC 2 cut(s) 71, 84
AoxI GGCC 5 cut(s) 6, 55, 61, 146, 462
ApaLI GTGCAC 1 cut(s) 622
ApeKI GCWGC 5 cut(s) 121, 427, 430, 692, 695
ApoI RAATTY 1 cut(s) 529
AspS9I GGNCC 4 cut(s) 55, 110, 462, 485
AsuC2I CCSGG 3 cut(s) 21, 35, 177
AsuHPI GGTGA 1 cut(s) 278
AvaII GGWCC 2 cut(s) 110, 485
BaeGI GKGCMC 1 cut(s) 626
BalI TGGCCA 1 cut(s) 148
BamHI GGATCC 1 cut(s) 76
BanII GRGCYC 1 cut(s) 526
Bbv12I GWGCWC 1 cut(s) 626
BbvI GCAGC 5 cut(s) 133, 439, 442, 682, 704
BccI CCATC 1 cut(s) 94
BceAI ACGGC 1 cut(s) 109
BcgI CGANNNNNNTGC 4 cut(s) 645, 671, 679, 705
BciT130I CCWGG 5 cut(s) 150, 234, 444, 466, 504
BcnI CCSGG 3 cut(s) 21, 35, 177
BcoDI GTCTC 1 cut(s) 309
BisI GCNGC 5 cut(s) 122, 428, 431, 693, 696
BlpI GCTNAGC 1 cut(s) 699
BlsI GCNGC 5 cut(s) 123, 429, 432, 694, 697
Bme1390I CCNGG 8 cut(s) 21, 35, 150, 177, 234, 444, 466, 504
Bme18I GGWCC 2 cut(s) 110, 485
BmgT120I GGNCC 4 cut(s) 55, 110, 462, 485
BmiI GGNNCC 3 cut(s) 78, 463, 525
BmrFI CCNGG 8 cut(s) 21, 35, 150, 177, 234, 444, 466, 504
BmrI ACTGGG 1 cut(s) 307
BmsI GCATC 4 cut(s) 374, 659, 662, 679
BmuI ACTGGG 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 324
Bpu1102I GCTNAGC 1 cut(s) 699
BpuMI CCSGG 3 cut(s) 21, 35, 177
BsaJI CCNNGG 6 cut(s) 58, 64, 149, 232, 443, 465
Bsc4I CCNNNNNNNGG 3 cut(s) 197, 347, 482
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 5 cut(s) 149, 275, 301, 313, 704
Bse3DI GCAATG 4 cut(s) 9, 21, 334, 605
BseBI CCWGG 5 cut(s) 150, 234, 444, 466, 504
BseDI CCNNGG 6 cut(s) 58, 64, 149, 232, 443, 465
BseGI GGATG 2 cut(s) 472, 624
BseLI CCNNNNNNNGG 3 cut(s) 197, 347, 482
BseMI GCAATG 4 cut(s) 9, 21, 334, 605
BseMII CTCAG 2 cut(s) 528, 713
BseNI ACTGG 5 cut(s) 149, 275, 301, 313, 704
BseSI GKGCMC 1 cut(s) 626
BseXI GCAGC 5 cut(s) 133, 439, 442, 682, 704
BshFI GGCC 5 cut(s) 8, 57, 63, 148, 464
BsiHKAI GWGCWC 1 cut(s) 626
BsiSI CCGG 4 cut(s) 5, 21, 35, 176
BslFI GGGAC 2 cut(s) 426, 524
BslI CCNNNNNNNGG 3 cut(s) 197, 347, 482
BsmAI GTCTC 1 cut(s) 309
BsmFI GGGAC 2 cut(s) 426, 524
BsnI GGCC 5 cut(s) 8, 57, 63, 148, 464
Bsp1286I GDGCHC 2 cut(s) 526, 626
Bsp143I GATC 1 cut(s) 76
Bsp1720I GCTNAGC 1 cut(s) 699
BspANI GGCC 5 cut(s) 8, 57, 63, 148, 464
BspCNI CTCAG 2 cut(s) 527, 712
BspLI GGNNCC 3 cut(s) 78, 463, 525
BspPI GGATC 2 cut(s) 71, 84
BsrDI GCAATG 4 cut(s) 9, 21, 334, 605
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 5 cut(s) 149, 275, 301, 313, 704
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 6 cut(s) 58, 64, 149, 232, 443, 465
BssMI GATC 1 cut(s) 76
BssT1I CCWWGG 1 cut(s) 64
Bst2UI CCWGG 5 cut(s) 150, 234, 444, 466, 504
Bst4CI ACNGT 2 cut(s) 360, 494
Bst6I CTCTTC 1 cut(s) 366
BstAPI GCANNNNNTGC 3 cut(s) 324, 630, 672
BstC8I GCNNGC 2 cut(s) 6, 561
BstDEI CTNAG 2 cut(s) 514, 699
BstF5I GGATG 2 cut(s) 472, 624
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 3 cut(s) 324, 630, 672
BstNI CCWGG 5 cut(s) 150, 234, 444, 466, 504
BstNSI RCATGY 2 cut(s) 419, 563
BstSCI CCNGG 8 cut(s) 19, 33, 148, 175, 232, 442, 464, 502
BstSLI GKGCMC 1 cut(s) 626
BstV1I GCAGC 5 cut(s) 133, 439, 442, 682, 704
BstX2I RGATCY 1 cut(s) 76
BstXI CCANNNNNNTGG 1 cut(s) 212
BstYI RGATCY 1 cut(s) 76
BsuRI GGCC 5 cut(s) 8, 57, 63, 148, 464
BtsCI GGATG 2 cut(s) 472, 624
BtsIMutI CAGTG 1 cut(s) 320
Cac8I GCNNGC 2 cut(s) 6, 561
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 4 cut(s) 55, 110, 462, 485
Csp6I GTAC 1 cut(s) 309
CviAII CATG 4 cut(s) 416, 544, 560, 715
CviQI GTAC 1 cut(s) 309
DdeI CTNAG 2 cut(s) 514, 699
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
DrdI GACNNNNNNGTC 1 cut(s) 492
DseDI GACNNNNNNGTC 1 cut(s) 492
EaeI YGGCCR 2 cut(s) 6, 146
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 64
Eco24I GRGCYC 1 cut(s) 526
Eco47I GGWCC 2 cut(s) 110, 485
Eco57I CTGAAG 1 cut(s) 390
EcoRII CCWGG 5 cut(s) 148, 232, 442, 464, 502
EcoT14I CCWWGG 1 cut(s) 64
EcoT22I ATGCAT 1 cut(s) 652
EcoT38I GRGCYC 1 cut(s) 526
ErhI CCWWGG 1 cut(s) 64
FaeI CATG 4 cut(s) 419, 547, 563, 718
FaqI GGGAC 2 cut(s) 426, 524
FatI CATG 4 cut(s) 415, 543, 559, 714
Fnu4HI GCNGC 5 cut(s) 122, 428, 431, 693, 696
FokI GGATG 2 cut(s) 459, 631
FriOI GRGCYC 1 cut(s) 526
Fsp4HI GCNGC 5 cut(s) 122, 428, 431, 693, 696
GluI GCNGC 5 cut(s) 122, 428, 431, 693, 696
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 5 cut(s) 8, 57, 63, 148, 464
HapII CCGG 4 cut(s) 5, 21, 35, 176
Hin1II CATG 4 cut(s) 419, 547, 563, 718
HinfI GANTC 4 cut(s) 168, 201, 244, 351
HpaII CCGG 4 cut(s) 5, 21, 35, 176
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 624
Hpy188I TCNGA 4 cut(s) 135, 249, 370, 510
Hpy188III TCNNGA 1 cut(s) 654
Hpy8I GTNNAC 1 cut(s) 624
HpyCH4III ACNGT 2 cut(s) 360, 494
HpyF10VI GCNNNNNNNGC 3 cut(s) 324, 630, 672
HpyF3I CTNAG 2 cut(s) 514, 699
Hsp92II CATG 4 cut(s) 419, 547, 563, 718
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 76
LmnI GCTCC 2 cut(s) 529, 590
Lsp1109I GCAGC 5 cut(s) 133, 439, 442, 682, 704
LweI GCATC 4 cut(s) 374, 659, 662, 679
MaeIII GTNAC 1 cut(s) 266
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 1 cut(s) 383
MfeI CAATTG 1 cut(s) 420
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 2 cut(s) 526, 626
MlsI TGGCCA 1 cut(s) 148
MluCI AATT 6 cut(s) 46, 295, 420, 529, 628, 643
MluNI TGGCCA 1 cut(s) 148
MlyI GAGTC 1 cut(s) 177
MnlI CCTC 6 cut(s) 53, 62, 123, 141, 348, 445
Mox20I TGGCCA 1 cut(s) 148
Mph1103I ATGCAT 1 cut(s) 652
MroNI GCCGGC 1 cut(s) 4
MscI TGGCCA 1 cut(s) 148
MseI TTAA 3 cut(s) 381, 551, 659
MslI CAYNNNNRTG 2 cut(s) 14, 645
Msp20I TGGCCA 1 cut(s) 148
MspA1I CMGCKG 1 cut(s) 695
MspI CCGG 4 cut(s) 5, 21, 35, 176
MspR9I CCNGG 8 cut(s) 21, 35, 150, 177, 234, 444, 466, 504
MunI CAATTG 1 cut(s) 420
MvaI CCWGG 5 cut(s) 150, 234, 444, 466, 504
MwoI GCNNNNNNNGC 3 cut(s) 324, 630, 672
NaeI GCCGGC 1 cut(s) 6
NciI CCSGG 3 cut(s) 21, 35, 177
NdeII GATC 1 cut(s) 76
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 4 cut(s) 419, 547, 563, 718
NlaIV GGNNCC 3 cut(s) 78, 463, 525
NmeAIII GCCGAG 1 cut(s) 83
NmuCI GTSAC 1 cut(s) 266
NsiI ATGCAT 1 cut(s) 652
NspI RCATGY 2 cut(s) 419, 563
PaeI GCATGC 1 cut(s) 563
PdiI GCCGGC 1 cut(s) 6
PfeI GAWTC 3 cut(s) 201, 244, 351
PflMI CCANNNNNTGG 1 cut(s) 347
PkrI GCNGC 5 cut(s) 123, 429, 432, 694, 697
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
Psp6I CCWGG 5 cut(s) 148, 232, 442, 464, 502
PspGI CCWGG 5 cut(s) 148, 232, 442, 464, 502
PspN4I GGNNCC 3 cut(s) 78, 463, 525
PspPI GGNCC 4 cut(s) 55, 110, 462, 485
PsuI RGATCY 1 cut(s) 76
PvuII CAGCTG 1 cut(s) 695
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
RseI CAYNNNNRTG 2 cut(s) 14, 645
SaqAI TTAA 3 cut(s) 381, 551, 659
SatI GCNGC 5 cut(s) 122, 428, 431, 693, 696
Sau3AI GATC 1 cut(s) 76
Sau96I GGNCC 4 cut(s) 55, 110, 462, 485
SchI GAGTC 1 cut(s) 177
ScrFI CCNGG 8 cut(s) 21, 35, 150, 177, 234, 444, 466, 504
SduI GDGCHC 2 cut(s) 526, 626
SetI ASST 9 cut(s) 199, 284, 326, 346, 456, 484, 490, 574, 697
SfaNI GCATC 4 cut(s) 374, 659, 662, 679
SinI GGWCC 2 cut(s) 110, 485
SmiMI CAYNNNNRTG 2 cut(s) 14, 645
SphI GCATGC 1 cut(s) 563
Sse9I AATT 6 cut(s) 46, 295, 420, 529, 628, 643
StyD4I CCNGG 8 cut(s) 19, 33, 148, 175, 232, 442, 464, 502
StyI CCWWGG 1 cut(s) 64
TaaI ACNGT 2 cut(s) 360, 494
TaqI TCGA 2 cut(s) 140, 655
TaqII GACCGA 1 cut(s) 695
TasI AATT 6 cut(s) 46, 295, 420, 529, 628, 643
TfiI GAWTC 3 cut(s) 201, 244, 351
Tru1I TTAA 3 cut(s) 381, 551, 659
Tru9I TTAA 3 cut(s) 381, 551, 659
TscAI CASTG 1 cut(s) 320
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 5 cut(s) 121, 427, 430, 692, 695
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 281
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 1 cut(s) 320
Van91I CCANNNNNTGG 1 cut(s) 347
VneI GTGCAC 1 cut(s) 622
VpaK11BI GGWCC 2 cut(s) 110, 485
XapI RAATTY 1 cut(s) 529
XceI RCATGY 2 cut(s) 419, 563
Zsp2I ATGCAT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.