Prupe.7G167400_v2.0.a1

Zn-finger in Ran binding protein and others

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0008648
Physical Location & Seq
Forward (+)
17067433 .. 17070832
3400 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G167400.3

Sequence Viewer

Length: 972 bp
ATGGCGGAAGGAAGGGAAGGTGATTGGGAATGCAGTGGATGCAGGAACAGAAACTACGCCTTCAGATCCTTCTGCAATCGCTGCAAGCAGCCTCGCCTTCTCGTCGACACCAAAACCCCCGCCGACTCCAAATGGCTCCCTCGTATTGGCGATTGGATCTGTACCGGTTGCACTAACAACAATTATGCATCAAGAGAGAAGTGCAAGAAGTGCGGGCAACCAAAGGAGGTGGCGGCAATGCCAGCAATTGCAATGCCTGGAGCTTCTCTCCCAACTTATTCACATTATTTTGCCAGGGCCCAAGGAGGACTGGACCAAAAGATGAATATCGGAATAATGGGCAATGGTGCTCCCCATCAGTCGCTTCCTCTGAACTGGTCTATGGCAGGGGCTGATAAATATGGAGTTCAGCCACCTTCGTCTTGGTCTGTAGGTGGGAACCATAATGCTGGACTTCTATATTCAAACCCTACTAATCAGCTTCTTTCAGTTCCAAAAGGATGGCGCAGCGGTGACTGGTTATGCAATTGCGGTTTCCACAATTATTCGTCTCGAACACAGTGCAAAAAATGCAATGCTTTTCCACCAGCTCTTGGAACAAAGCGATTAGCATCGGAAGAGCTTGTTCATGACTGGGATAACAAGAGATTGAACATAGGAAGTACAGTTGGGCATCAGCAATCCTATCCTGGGTTTGAGCAAGTGGTAGGCACCAGTGGTAACCCTGTAACTGGACCTTACGCTTCATATCCTCCCAGTATAAGCTCAGGCATGGCTCCGAATTTGCAAGTCCCCATGCCATTGACACAGCAAACAACGACACCTACACTCCTTGGCAAAGGAGCAAAGCAATGGCGTAATGGGGATTGGATGTGCACAAATTGCAACAATCATAATTATGCGTCTCGGTTAAATTGCAATAGGTGCAAGACTCAAAGAGATGCAACCGCTCAGCCGGTCAATGTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005642 GO:0005643 GO:0005737 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006403 GO:0006405 GO:0006406 GO:0006464 GO:0006508 GO:0006511 GO:0006606 GO:0006607 GO:0006611 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007088 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0010564 GO:0010638 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016740 GO:0016925 GO:0017016 GO:0017038 GO:0018193 GO:0018205 GO:0019538 GO:0019787 GO:0019789 GO:0019899 GO:0019941 GO:0022402 GO:0030163 GO:0031090 GO:0031267 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032446 GO:0032886 GO:0032991 GO:0033036 GO:0033043 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0042175 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044614 GO:0044615 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0045787 GO:0045840 GO:0045931 GO:0046602 GO:0046604 GO:0046605 GO:0046607 GO:0046907 GO:0048518 GO:0048522 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051020 GO:0051028 GO:0051128 GO:0051130 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051493 GO:0051495 GO:0051603 GO:0051640 GO:0051641 GO:0051642 GO:0051649 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0061842 GO:0065007 GO:0070507 GO:0070647 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0090068 GO:0098589 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903047
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

324

Amino Acids

35.44

Weight (kDa)

9.22

Isoelectric Point (pI)

53.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 710
AccB7I CCANNNNNTGG 1 cut(s) 593
AccBSI CCGCTC 1 cut(s) 950
AccI GTMKAC 1 cut(s) 105
AciI CCGC 7 cut(s) 5, 120, 213, 233, 510, 531, 948
AclWI GGATC 2 cut(s) 60, 164
AcsI RAATTY 1 cut(s) 781
AcuI CTGAAG 1 cut(s) 46
AfaI GTAC 2 cut(s) 163, 664
AfiI CCNNNNNNNGG 4 cut(s) 146, 593, 690, 731
AgeI ACCGGT 1 cut(s) 164
AgsI TTSAA 2 cut(s) 465, 652
AjnI CCWGG 3 cut(s) 256, 293, 688
AluBI AGCT 5 cut(s) 263, 481, 590, 622, 765
AluI AGCT 5 cut(s) 263, 481, 590, 622, 765
Alw21I GWGCWC 2 cut(s) 352, 878
Alw26I GTCTC 2 cut(s) 555, 909
Alw44I GTGCAC 1 cut(s) 874
AlwI GGATC 2 cut(s) 60, 164
AlwNI CAGNNNCTG 1 cut(s) 392
AoxI GGCC 1 cut(s) 297
ApaI GGGCCC 1 cut(s) 301
ApaLI GTGCAC 1 cut(s) 874
ApeKI GCWGC 3 cut(s) 81, 88, 507
ApoI RAATTY 1 cut(s) 781
AsiGI ACCGGT 1 cut(s) 164
AspLEI GCGC 1 cut(s) 507
AspS9I GGNCC 4 cut(s) 297, 298, 313, 734
AsuHPI GGTGA 2 cut(s) 32, 524
AvaII GGWCC 2 cut(s) 313, 734
BaeGI GKGCMC 2 cut(s) 301, 878
BanI GGYRCC 1 cut(s) 710
BanII GRGCYC 1 cut(s) 301
Bbv12I GWGCWC 2 cut(s) 352, 878
BbvI GCAGC 3 cut(s) 68, 100, 519
BccI CCATC 2 cut(s) 363, 495
BcgI CGANNNNNNTGC 2 cut(s) 543, 577
BciT130I CCWGG 3 cut(s) 258, 295, 690
BcoDI GTCTC 2 cut(s) 555, 909
BfmI CTRYAG 1 cut(s) 429
BisI GCNGC 4 cut(s) 82, 89, 234, 508
BlpI GCTNAGC 1 cut(s) 951
BlsI GCNGC 4 cut(s) 83, 90, 235, 509
Bme1390I CCNGG 3 cut(s) 258, 295, 690
Bme18I GGWCC 2 cut(s) 313, 734
BmgT120I GGNCC 4 cut(s) 297, 298, 313, 734
BmiI GGNNCC 5 cut(s) 137, 299, 440, 712, 777
BmrFI CCNGG 3 cut(s) 258, 295, 690
BmrI ACTGGG 2 cut(s) 643, 750
BmsI GCATC 5 cut(s) 29, 197, 620, 682, 931
BmuI ACTGGG 2 cut(s) 643, 750
BplI GAGNNNNNCTC 2 cut(s) 252, 284
BpmI CTGGAG 1 cut(s) 279
Bpu10I CCTNAGC 1 cut(s) 766
Bpu1102I GCTNAGC 1 cut(s) 951
BsaBI GATNNNNATC 2 cut(s) 326, 610
BsaJI CCNNGG 4 cut(s) 294, 301, 689, 832
BsaWI WCCGGW 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 813, 843
Bsc4I CCNNNNNNNGG 4 cut(s) 146, 593, 690, 731
Bse118I RCCGGY 2 cut(s) 164, 955
Bse1I ACTGG 7 cut(s) 315, 380, 521, 638, 714, 736, 756
Bse3DI GCAATG 5 cut(s) 243, 258, 349, 580, 857
Bse8I GATNNNNATC 2 cut(s) 326, 610
BseBI CCWGG 3 cut(s) 258, 295, 690
BseDI CCNNGG 4 cut(s) 294, 301, 689, 832
BseGI GGATG 3 cut(s) 44, 506, 876
BseJI GATNNNNATC 2 cut(s) 326, 610
BseLI CCNNNNNNNGG 4 cut(s) 146, 593, 690, 731
BseMI GCAATG 5 cut(s) 243, 258, 349, 580, 857
BseMII CTCAG 2 cut(s) 780, 965
BseNI ACTGG 7 cut(s) 315, 380, 521, 638, 714, 736, 756
BseSI GKGCMC 2 cut(s) 301, 878
BseXI GCAGC 3 cut(s) 68, 100, 519
BshFI GGCC 1 cut(s) 299
BshNI GGYRCC 1 cut(s) 710
BshTI ACCGGT 1 cut(s) 164
BsiHKAI GWGCWC 2 cut(s) 352, 878
BsiSI CCGG 2 cut(s) 165, 956
BslFI GGGAC 1 cut(s) 776
BslI CCNNNNNNNGG 4 cut(s) 146, 593, 690, 731
BsmAI GTCTC 2 cut(s) 555, 909
BsmBI CGTCTC 2 cut(s) 555, 909
BsmFI GGGAC 1 cut(s) 776
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 1 cut(s) 299
Bsp120I GGGCCC 1 cut(s) 297
Bsp1286I GDGCHC 3 cut(s) 301, 352, 878
Bsp143I GATC 2 cut(s) 65, 156
Bsp1720I GCTNAGC 1 cut(s) 951
BspACI CCGC 7 cut(s) 5, 120, 213, 233, 510, 531, 948
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 2 cut(s) 779, 964
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 5 cut(s) 137, 299, 440, 712, 777
BspPI GGATC 2 cut(s) 60, 164
BspQI GCTCTTC 1 cut(s) 612
BspT107I GGYRCC 1 cut(s) 710
BsrBI CCGCTC 1 cut(s) 950
BsrDI GCAATG 5 cut(s) 243, 258, 349, 580, 857
BsrFI RCCGGY 2 cut(s) 164, 955
BsrI ACTGG 7 cut(s) 315, 380, 521, 638, 714, 736, 756
BssAI RCCGGY 2 cut(s) 164, 955
BssECI CCNNGG 4 cut(s) 294, 301, 689, 832
BssMI GATC 2 cut(s) 65, 156
BssT1I CCWWGG 2 cut(s) 301, 832
Bst2UI CCWGG 3 cut(s) 258, 295, 690
Bst4CI ACNGT 2 cut(s) 561, 667
Bst6I CTCTTC 1 cut(s) 612
BstAPI GCANNNNNTGC 6 cut(s) 39, 81, 210, 570, 882, 924
BstC8I GCNNGC 3 cut(s) 86, 215, 243
BstDEI CTNAG 2 cut(s) 766, 951
BstEII GGTNACC 1 cut(s) 719
BstF5I GGATG 3 cut(s) 44, 506, 876
BstHHI GCGC 1 cut(s) 507
BstKTI GATC 2 cut(s) 68, 159
BstMAI GTCTC 2 cut(s) 555, 909
BstMBI GATC 2 cut(s) 65, 156
BstMWI GCNNNNNNNGC 7 cut(s) 39, 81, 210, 242, 570, 882, 924
BstNI CCWGG 3 cut(s) 258, 295, 690
BstPI GGTNACC 1 cut(s) 719
BstSCI CCNGG 3 cut(s) 256, 293, 688
BstSFI CTRYAG 1 cut(s) 429
BstSLI GKGCMC 2 cut(s) 301, 878
BstV1I GCAGC 3 cut(s) 68, 100, 519
BstX2I RGATCY 2 cut(s) 65, 156
BstXI CCANNNNNNTGG 2 cut(s) 449, 501
BstYI RGATCY 2 cut(s) 65, 156
BsuRI GGCC 1 cut(s) 299
BtsCI GGATG 3 cut(s) 44, 506, 876
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 3 cut(s) 40, 566, 721
Cac8I GCNNGC 3 cut(s) 86, 215, 243
CaiI CAGNNNCTG 1 cut(s) 392
CciI TCATGA 1 cut(s) 628
CfoI GCGC 1 cut(s) 507
Cfr10I RCCGGY 2 cut(s) 164, 955
Cfr13I GGNCC 4 cut(s) 297, 298, 313, 734
CseI GACGC 1 cut(s) 891
Csp6I GTAC 2 cut(s) 162, 663
CspAI ACCGGT 1 cut(s) 164
CspCI CAANNNNNGTGG 2 cut(s) 210, 245
CviAII CATG 4 cut(s) 629, 772, 796, 967
CviQI GTAC 2 cut(s) 162, 663
DdeI CTNAG 2 cut(s) 766, 951
DpnI GATC 2 cut(s) 67, 158
DpnII GATC 2 cut(s) 65, 156
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 301, 832
Eco24I GRGCYC 1 cut(s) 301
Eco47I GGWCC 2 cut(s) 313, 734
Eco57I CTGAAG 1 cut(s) 46
Eco91I GGTNACC 1 cut(s) 719
EcoO109I RGGNCCY 1 cut(s) 297
EcoO65I GGTNACC 1 cut(s) 719
EcoRII CCWGG 3 cut(s) 256, 293, 688
EcoT14I CCWWGG 2 cut(s) 301, 832
EcoT22I ATGCAT 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 301
ErhI CCWWGG 2 cut(s) 301, 832
Esp3I CGTCTC 2 cut(s) 555, 909
FaeI CATG 4 cut(s) 632, 775, 799, 970
FaqI GGGAC 1 cut(s) 776
FatI CATG 4 cut(s) 628, 771, 795, 966
FauI CCCGC 2 cut(s) 127, 206
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 4 cut(s) 82, 89, 234, 508
FokI GGATG 3 cut(s) 51, 513, 883
FriOI GRGCYC 1 cut(s) 301
Fsp4HI GCNGC 4 cut(s) 82, 89, 234, 508
GlaI GCGC 1 cut(s) 506
GluI GCNGC 4 cut(s) 82, 89, 234, 508
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 1 cut(s) 299
HapII CCGG 2 cut(s) 165, 956
HgaI GACGC 1 cut(s) 891
HhaI GCGC 1 cut(s) 507
Hin1II CATG 4 cut(s) 632, 775, 799, 970
Hin6I GCGC 1 cut(s) 505
HinP1I GCGC 1 cut(s) 505
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 2 cut(s) 125, 931
HpaII CCGG 2 cut(s) 165, 956
HphI GGTGA 2 cut(s) 32, 524
Hpy166II GTNNAC 2 cut(s) 106, 876
Hpy188I TCNGA 5 cut(s) 65, 332, 372, 616, 780
Hpy188III TCNNGA 3 cut(s) 192, 552, 629
Hpy8I GTNNAC 2 cut(s) 106, 876
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 6 cut(s) 6, 11, 70, 79, 107, 426
HpyCH4III ACNGT 2 cut(s) 561, 667
HpyF10VI GCNNNNNNNGC 7 cut(s) 39, 81, 210, 242, 570, 882, 924
HpyF3I CTNAG 2 cut(s) 766, 951
Hsp92II CATG 4 cut(s) 632, 775, 799, 970
HspAI GCGC 1 cut(s) 505
Kzo9I GATC 2 cut(s) 65, 156
LguI GCTCTTC 1 cut(s) 612
LmnI GCTCC 5 cut(s) 141, 260, 355, 781, 842
Lsp1109I GCAGC 3 cut(s) 68, 100, 519
LweI GCATC 5 cut(s) 29, 197, 620, 682, 931
MaeIII GTNAC 3 cut(s) 512, 719, 727
MalI GATC 2 cut(s) 67, 158
MbiI CCGCTC 1 cut(s) 950
MboI GATC 2 cut(s) 65, 156
MboII GAAGA 1 cut(s) 629
MfeI CAATTG 2 cut(s) 246, 526
MflI RGATCY 2 cut(s) 65, 156
MhlI GDGCHC 3 cut(s) 301, 352, 878
MluCI AATT 8 cut(s) 181, 246, 526, 541, 781, 880, 895, 913
MlyI GAGTC 2 cut(s) 119, 925
MnlI CCTC 6 cut(s) 102, 150, 220, 299, 378, 762
Mph1103I ATGCAT 1 cut(s) 190
MseI TTAA 1 cut(s) 911
MslI CAYNNNNRTG 1 cut(s) 897
MspA1I CMGCKG 1 cut(s) 510
MspI CCGG 2 cut(s) 165, 956
MspR9I CCNGG 3 cut(s) 258, 295, 690
MunI CAATTG 2 cut(s) 246, 526
Mva1269I GAATGC 1 cut(s) 35
MvaI CCWGG 3 cut(s) 258, 295, 690
MwoI GCNNNNNNNGC 7 cut(s) 39, 81, 210, 242, 570, 882, 924
NdeII GATC 2 cut(s) 65, 156
NlaIII CATG 4 cut(s) 632, 775, 799, 970
NlaIV GGNNCC 5 cut(s) 137, 299, 440, 712, 777
NmuCI GTSAC 1 cut(s) 512
NsiI ATGCAT 1 cut(s) 190
PagI TCATGA 1 cut(s) 628
PciSI GCTCTTC 1 cut(s) 612
PctI GAATGC 1 cut(s) 35
PflMI CCANNNNNTGG 1 cut(s) 593
PinAI ACCGGT 1 cut(s) 164
PkrI GCNGC 4 cut(s) 83, 90, 235, 509
PleI GAGTC 2 cut(s) 119, 925
PpsI GAGTC 2 cut(s) 119, 925
Psp6I CCWGG 3 cut(s) 256, 293, 688
PspEI GGTNACC 1 cut(s) 719
PspGI CCWGG 3 cut(s) 256, 293, 688
PspN4I GGNNCC 5 cut(s) 137, 299, 440, 712, 777
PspOMI GGGCCC 1 cut(s) 297
PspPI GGNCC 4 cut(s) 297, 298, 313, 734
PsrI GAACNNNNNNTAC 2 cut(s) 38, 70
PstNI CAGNNNCTG 1 cut(s) 392
PsuI RGATCY 2 cut(s) 65, 156
RsaI GTAC 2 cut(s) 163, 664
RsaNI GTAC 2 cut(s) 162, 663
RseI CAYNNNNRTG 1 cut(s) 897
SalI GTCGAC 1 cut(s) 104
SapI GCTCTTC 1 cut(s) 612
SaqAI TTAA 1 cut(s) 911
SatI GCNGC 4 cut(s) 82, 89, 234, 508
Sau3AI GATC 2 cut(s) 65, 156
Sau96I GGNCC 4 cut(s) 297, 298, 313, 734
SchI GAGTC 2 cut(s) 119, 925
ScrFI CCNGG 3 cut(s) 258, 295, 690
SduI GDGCHC 3 cut(s) 301, 352, 878
SfaNI GCATC 5 cut(s) 29, 197, 620, 682, 931
SfcI CTRYAG 1 cut(s) 429
SinI GGWCC 2 cut(s) 313, 734
SmiMI CAYNNNNRTG 1 cut(s) 897
Sse9I AATT 8 cut(s) 181, 246, 526, 541, 781, 880, 895, 913
SsiI CCGC 7 cut(s) 5, 120, 213, 233, 510, 531, 948
StyD4I CCNGG 3 cut(s) 256, 293, 688
StyI CCWWGG 2 cut(s) 301, 832
TaaI ACNGT 2 cut(s) 561, 667
TaqI TCGA 2 cut(s) 105, 553
TasI AATT 8 cut(s) 181, 246, 526, 541, 781, 880, 895, 913
TatI WGTACW 1 cut(s) 662
TauI GCSGC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 911
Tru9I TTAA 1 cut(s) 911
TscAI CASTG 3 cut(s) 40, 566, 721
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 3 cut(s) 81, 88, 507
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 3 cut(s) 338, 617, 735
TspRI CASTG 3 cut(s) 40, 566, 721
Van91I CCANNNNNTGG 1 cut(s) 593
VneI GTGCAC 1 cut(s) 874
VpaK11BI GGWCC 2 cut(s) 313, 734
XapI RAATTY 1 cut(s) 781
XcmI CCANNNNNNNNNTGG 1 cut(s) 420
XmiI GTMKAC 1 cut(s) 105
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.