pycom15g21670

Zn-finger in Ran binding protein and others

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0008648
Physical Location & Seq
Reverse (-)
15711490 .. 15714330
2841 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g21670.7

Sequence Viewer

Length: 963 bp
ATGGCGGAAGGAAGAGAAGGGGATTGGGAGTGCAGTGGATGCAGGAACAGAAACTACGCCTTCAGATCCTTCTGCAATCGCTGCAAGCAGCCTCGCCTTCTCGTCGACACCAAAACCCCCGCCGACTCTAAGTGGCTCCCTCGCATCGGCGATTGGATCTGCACCGGTTGCACTAACAACAATTATGCATCAAGAGAAAAGTGCAAAAAGTGCGGGCAACCAAAGGAGGTAGCGGCAATGCCAGCGGTTGCAATCCCCGGAGCTTCTCTCCCAACTTATTCACATTATTTTGCCAGGGCCCAAGGAGGACGGGACCAAAGGATGATGATGGGCAATGGTGCTCCCCCACATTCGCTTCCTCTGAACTGGTCTATACCAGGGGCTGATAAGTTTGGAGTTCAGCCGGCTCCTACTTGGCCTGTAGGTGGAAACCATAATGCTGGACTTCCACATGCAAATTCTACTAATCAGCTTCTTTCAGTTCCAAAAGGATGGCGCAGTGGTGATTGGTTATGCAGTTGCGGTTTCCATAATTATTCGTCTCGAACACAGTGCAAAAAATGCGATGCTTTTCCACCATCTCTTGGAATGAAGCGATTAGCATCCGAAGAGCTTGTTCATGACTGGGATAACAAGAGACTGAATGTAGGACATACAGTTGGGCAGCAGCTATCCTATCCTGGATTTGAGCAAGTGGTAGGGACCAGTGGTAACCCTGCAACTGGACCTTACGCTCCTTATCATCCCAATGTAAGCTCAGGTGTGGCTCCGAATTTGCAAGTACCCATGTCATTCACACAGCAAGCAATGACACCTACACTTCTTGGAAAAGGAGCAAAGCAATGGCGTAATGGGGATTGGATGTGCACAAATTGCAACAATCATAATTATGCATCTCGATTAAACTGCAATAGGTGCAAGACTGAAAGAGATCCAACCGCTCAGCCAGTCAACACCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005642 GO:0005643 GO:0005737 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006403 GO:0006405 GO:0006406 GO:0006464 GO:0006508 GO:0006511 GO:0006606 GO:0006607 GO:0006611 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007088 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0010564 GO:0010638 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016740 GO:0016925 GO:0017016 GO:0017038 GO:0018193 GO:0018205 GO:0019538 GO:0019787 GO:0019789 GO:0019899 GO:0019941 GO:0022402 GO:0030163 GO:0031090 GO:0031267 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032446 GO:0032886 GO:0032991 GO:0033036 GO:0033043 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0042175 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044614 GO:0044615 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0045787 GO:0045840 GO:0045931 GO:0046602 GO:0046604 GO:0046605 GO:0046607 GO:0046907 GO:0048518 GO:0048522 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051020 GO:0051028 GO:0051128 GO:0051130 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051493 GO:0051495 GO:0051603 GO:0051640 GO:0051641 GO:0051642 GO:0051649 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0061842 GO:0065007 GO:0070507 GO:0070647 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0090068 GO:0098589 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903047
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

321

Amino Acids

35.21

Weight (kDa)

9.18

Isoelectric Point (pI)

47.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 584
AccBSI CCGCTC 1 cut(s) 941
AccI GTMKAC 1 cut(s) 105
AciI CCGC 7 cut(s) 5, 120, 213, 233, 245, 522, 939
AclWI GGATC 3 cut(s) 60, 164, 926
AcsI RAATTY 2 cut(s) 457, 772
AcuI CTGAAG 1 cut(s) 46
AfaI GTAC 1 cut(s) 783
AfiI CCNNNNNNNGG 4 cut(s) 146, 425, 584, 722
AgeI ACCGGT 1 cut(s) 164
AjnI CCWGG 3 cut(s) 293, 376, 679
AluBI AGCT 5 cut(s) 263, 472, 613, 670, 756
AluI AGCT 5 cut(s) 263, 472, 613, 670, 756
Alw21I GWGCWC 2 cut(s) 343, 869
Alw26I GTCTC 2 cut(s) 546, 631
Alw44I GTGCAC 1 cut(s) 865
AlwI GGATC 3 cut(s) 60, 164, 926
AlwNI CAGNNNCTG 1 cut(s) 383
AoxI GGCC 2 cut(s) 297, 416
ApaI GGGCCC 1 cut(s) 301
ApaLI GTGCAC 1 cut(s) 865
ApeKI GCWGC 4 cut(s) 81, 88, 664, 667
ApoI RAATTY 2 cut(s) 457, 772
AsiGI ACCGGT 1 cut(s) 164
AspLEI GCGC 1 cut(s) 498
AspS9I GGNCC 5 cut(s) 297, 298, 313, 702, 725
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 1 cut(s) 515
AvaII GGWCC 3 cut(s) 313, 702, 725
BaeGI GKGCMC 2 cut(s) 301, 869
BanII GRGCYC 1 cut(s) 301
Bbv12I GWGCWC 2 cut(s) 343, 869
BbvI GCAGC 4 cut(s) 68, 100, 676, 679
BccI CCATC 3 cut(s) 322, 486, 586
BcgI CGANNNNNNTGC 4 cut(s) 534, 568, 888, 922
BciT130I CCWGG 3 cut(s) 295, 378, 681
BcnI CCSGG 1 cut(s) 258
BcoDI GTCTC 2 cut(s) 546, 631
BfmI CTRYAG 1 cut(s) 420
BisI GCNGC 5 cut(s) 82, 89, 234, 665, 668
BlpI GCTNAGC 1 cut(s) 942
BlsI GCNGC 5 cut(s) 83, 90, 235, 666, 669
Bme1390I CCNGG 4 cut(s) 258, 295, 378, 681
Bme18I GGWCC 3 cut(s) 313, 702, 725
BmgT120I GGNCC 5 cut(s) 297, 298, 313, 702, 725
BmiI GGNNCC 6 cut(s) 137, 299, 314, 408, 703, 768
BmrFI CCNGG 4 cut(s) 258, 295, 378, 681
BmrI ACTGGG 1 cut(s) 634
BmsI GCATC 6 cut(s) 29, 153, 197, 556, 611, 902
BmuI ACTGGG 1 cut(s) 634
BplI GAGNNNNNCTC 2 cut(s) 252, 284
Bpu10I CCTNAGC 1 cut(s) 757
Bpu1102I GCTNAGC 1 cut(s) 942
BpuMI CCSGG 1 cut(s) 258
BsaBI GATNNNNATC 1 cut(s) 601
BsaJI CCNNGG 4 cut(s) 256, 294, 301, 377
BsaWI WCCGGW 1 cut(s) 164
Bsc4I CCNNNNNNNGG 4 cut(s) 146, 425, 584, 722
Bse118I RCCGGY 2 cut(s) 164, 403
Bse1I ACTGG 5 cut(s) 371, 629, 705, 727, 947
Bse3DI GCAATG 4 cut(s) 243, 340, 813, 848
Bse8I GATNNNNATC 1 cut(s) 601
BseBI CCWGG 3 cut(s) 295, 378, 681
BseDI CCNNGG 4 cut(s) 256, 294, 301, 377
BseGI GGATG 6 cut(s) 44, 327, 497, 602, 742, 867
BseJI GATNNNNATC 1 cut(s) 601
BseLI CCNNNNNNNGG 4 cut(s) 146, 425, 584, 722
BseMI GCAATG 4 cut(s) 243, 340, 813, 848
BseMII CTCAG 2 cut(s) 771, 956
BseNI ACTGG 5 cut(s) 371, 629, 705, 727, 947
BseSI GKGCMC 2 cut(s) 301, 869
BseXI GCAGC 4 cut(s) 68, 100, 676, 679
BsgI GTGCAG 2 cut(s) 52, 145
BshFI GGCC 2 cut(s) 299, 418
BshTI ACCGGT 1 cut(s) 164
BsiHKAI GWGCWC 2 cut(s) 343, 869
BsiSI CCGG 3 cut(s) 165, 258, 404
BslFI GGGAC 2 cut(s) 326, 715
BslI CCNNNNNNNGG 4 cut(s) 146, 425, 584, 722
BsmAI GTCTC 2 cut(s) 546, 631
BsmBI CGTCTC 1 cut(s) 546
BsmFI GGGAC 2 cut(s) 326, 715
BsnI GGCC 2 cut(s) 299, 418
Bsp120I GGGCCC 1 cut(s) 297
Bsp1286I GDGCHC 3 cut(s) 301, 343, 869
Bsp143I GATC 3 cut(s) 65, 156, 931
Bsp1720I GCTNAGC 1 cut(s) 942
BspACI CCGC 7 cut(s) 5, 120, 213, 233, 245, 522, 939
BspANI GGCC 2 cut(s) 299, 418
BspCNI CTCAG 2 cut(s) 770, 955
BspHI TCATGA 1 cut(s) 619
BspLI GGNNCC 6 cut(s) 137, 299, 314, 408, 703, 768
BspPI GGATC 3 cut(s) 60, 164, 926
BspQI GCTCTTC 1 cut(s) 603
BsrBI CCGCTC 1 cut(s) 941
BsrDI GCAATG 4 cut(s) 243, 340, 813, 848
BsrFI RCCGGY 2 cut(s) 164, 403
BsrI ACTGG 5 cut(s) 371, 629, 705, 727, 947
BssAI RCCGGY 2 cut(s) 164, 403
BssECI CCNNGG 4 cut(s) 256, 294, 301, 377
BssMI GATC 3 cut(s) 65, 156, 931
BssT1I CCWWGG 1 cut(s) 301
Bst2UI CCWGG 3 cut(s) 295, 378, 681
Bst4CI ACNGT 2 cut(s) 552, 658
Bst6I CTCTTC 2 cut(s) 7, 603
BstAPI GCANNNNNTGC 7 cut(s) 39, 81, 168, 210, 561, 873, 915
BstC8I GCNNGC 5 cut(s) 86, 215, 243, 405, 804
BstDEI CTNAG 3 cut(s) 129, 757, 942
BstEII GGTNACC 1 cut(s) 710
BstF5I GGATG 6 cut(s) 44, 327, 497, 602, 742, 867
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 3 cut(s) 68, 159, 934
BstMAI GTCTC 2 cut(s) 546, 631
BstMBI GATC 3 cut(s) 65, 156, 931
BstMWI GCNNNNNNNGC 8 cut(s) 39, 81, 168, 210, 242, 561, 873, 915
BstNI CCWGG 3 cut(s) 295, 378, 681
BstNSI RCATGY 1 cut(s) 455
BstPI GGTNACC 1 cut(s) 710
BstSCI CCNGG 4 cut(s) 256, 293, 376, 679
BstSFI CTRYAG 1 cut(s) 420
BstSLI GKGCMC 2 cut(s) 301, 869
BstV1I GCAGC 4 cut(s) 68, 100, 676, 679
BstX2I RGATCY 3 cut(s) 65, 156, 931
BstXI CCANNNNNNTGG 2 cut(s) 440, 492
BstYI RGATCY 3 cut(s) 65, 156, 931
BsuRI GGCC 2 cut(s) 299, 418
BtgZI GCGATG 1 cut(s) 579
BtsCI GGATG 6 cut(s) 44, 327, 497, 602, 742, 867
BtsI GCAGTG 2 cut(s) 40, 505
BtsIMutI CAGTG 4 cut(s) 40, 505, 557, 712
Cac8I GCNNGC 5 cut(s) 86, 215, 243, 405, 804
CaiI CAGNNNCTG 1 cut(s) 383
CciI TCATGA 1 cut(s) 619
CfoI GCGC 1 cut(s) 498
Cfr10I RCCGGY 2 cut(s) 164, 403
Cfr13I GGNCC 5 cut(s) 297, 298, 313, 702, 725
Csp6I GTAC 1 cut(s) 782
CspAI ACCGGT 1 cut(s) 164
CviAII CATG 4 cut(s) 452, 620, 787, 958
CviQI GTAC 1 cut(s) 782
DdeI CTNAG 3 cut(s) 129, 757, 942
DpnI GATC 3 cut(s) 67, 158, 933
DpnII GATC 3 cut(s) 65, 156, 931
Eam1104I CTCTTC 2 cut(s) 7, 603
EarI CTCTTC 2 cut(s) 7, 603
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 301
Eco47I GGWCC 3 cut(s) 313, 702, 725
Eco57I CTGAAG 1 cut(s) 46
Eco91I GGTNACC 1 cut(s) 710
EcoO109I RGGNCCY 1 cut(s) 297
EcoO65I GGTNACC 1 cut(s) 710
EcoRII CCWGG 3 cut(s) 293, 376, 679
EcoT14I CCWWGG 1 cut(s) 301
EcoT22I ATGCAT 2 cut(s) 190, 895
EcoT38I GRGCYC 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 301
Esp3I CGTCTC 1 cut(s) 546
FaeI CATG 4 cut(s) 455, 623, 790, 961
FaqI GGGAC 2 cut(s) 326, 715
FatI CATG 4 cut(s) 451, 619, 786, 957
FauI CCCGC 2 cut(s) 127, 206
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 5 cut(s) 82, 89, 234, 665, 668
FokI GGATG 6 cut(s) 51, 334, 504, 589, 729, 874
FriOI GRGCYC 1 cut(s) 301
Fsp4HI GCNGC 5 cut(s) 82, 89, 234, 665, 668
GlaI GCGC 1 cut(s) 497
GluI GCNGC 5 cut(s) 82, 89, 234, 665, 668
HaeIII GGCC 2 cut(s) 299, 418
HapII CCGG 3 cut(s) 165, 258, 404
HhaI GCGC 1 cut(s) 498
Hin1II CATG 4 cut(s) 455, 623, 790, 961
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HincII GTYRAC 2 cut(s) 106, 952
HindII GTYRAC 2 cut(s) 106, 952
HinfI GANTC 1 cut(s) 125
HpaII CCGG 3 cut(s) 165, 258, 404
HphI GGTGA 1 cut(s) 515
Hpy166II GTNNAC 3 cut(s) 106, 867, 952
Hpy188I TCNGA 4 cut(s) 65, 363, 607, 771
Hpy188III TCNNGA 4 cut(s) 192, 543, 620, 897
Hpy8I GTNNAC 3 cut(s) 106, 867, 952
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 4 cut(s) 11, 70, 79, 107
HpyCH4III ACNGT 2 cut(s) 552, 658
HpyF10VI GCNNNNNNNGC 8 cut(s) 39, 81, 168, 210, 242, 561, 873, 915
HpyF3I CTNAG 3 cut(s) 129, 757, 942
Hsp92II CATG 4 cut(s) 455, 623, 790, 961
HspAI GCGC 1 cut(s) 496
KroI GCCGGC 1 cut(s) 403
KroNI GCCGGC 1 cut(s) 405
Kzo9I GATC 3 cut(s) 65, 156, 931
LguI GCTCTTC 1 cut(s) 603
LmnI GCTCC 7 cut(s) 141, 260, 346, 412, 739, 772, 833
Lsp1109I GCAGC 4 cut(s) 68, 100, 676, 679
LweI GCATC 6 cut(s) 29, 153, 197, 556, 611, 902
MaeIII GTNAC 1 cut(s) 710
MalI GATC 3 cut(s) 67, 158, 933
MbiI CCGCTC 1 cut(s) 941
MboI GATC 3 cut(s) 65, 156, 931
MboII GAAGA 2 cut(s) 24, 620
MflI RGATCY 3 cut(s) 65, 156, 931
MhlI GDGCHC 3 cut(s) 301, 343, 869
MluCI AATT 6 cut(s) 181, 457, 532, 772, 871, 886
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 959
MnlI CCTC 5 cut(s) 102, 150, 220, 299, 369
Mph1103I ATGCAT 2 cut(s) 190, 895
MroNI GCCGGC 1 cut(s) 403
MseI TTAA 1 cut(s) 902
MslI CAYNNNNRTG 2 cut(s) 747, 888
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 3 cut(s) 165, 258, 404
MspR9I CCNGG 4 cut(s) 258, 295, 378, 681
MvaI CCWGG 3 cut(s) 295, 378, 681
MwoI GCNNNNNNNGC 8 cut(s) 39, 81, 168, 210, 242, 561, 873, 915
NaeI GCCGGC 1 cut(s) 405
NciI CCSGG 1 cut(s) 258
NdeII GATC 3 cut(s) 65, 156, 931
NgoMIV GCCGGC 1 cut(s) 403
NlaIII CATG 4 cut(s) 455, 623, 790, 961
NlaIV GGNNCC 6 cut(s) 137, 299, 314, 408, 703, 768
NsiI ATGCAT 2 cut(s) 190, 895
NspI RCATGY 1 cut(s) 455
PagI TCATGA 1 cut(s) 619
PciSI GCTCTTC 1 cut(s) 603
PdiI GCCGGC 1 cut(s) 405
PflMI CCANNNNNTGG 1 cut(s) 584
PfoI TCCNGGA 1 cut(s) 679
PinAI ACCGGT 1 cut(s) 164
PkrI GCNGC 5 cut(s) 83, 90, 235, 666, 669
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp6I CCWGG 3 cut(s) 293, 376, 679
PspEI GGTNACC 1 cut(s) 710
PspGI CCWGG 3 cut(s) 293, 376, 679
PspN4I GGNNCC 6 cut(s) 137, 299, 314, 408, 703, 768
PspOMI GGGCCC 1 cut(s) 297
PspPI GGNCC 5 cut(s) 297, 298, 313, 702, 725
PsrI GAACNNNNNNTAC 2 cut(s) 38, 70
PstNI CAGNNNCTG 1 cut(s) 383
PsuI RGATCY 3 cut(s) 65, 156, 931
RsaI GTAC 1 cut(s) 783
RsaNI GTAC 1 cut(s) 782
RseI CAYNNNNRTG 2 cut(s) 747, 888
SalI GTCGAC 1 cut(s) 104
SapI GCTCTTC 1 cut(s) 603
SaqAI TTAA 1 cut(s) 902
SatI GCNGC 5 cut(s) 82, 89, 234, 665, 668
Sau3AI GATC 3 cut(s) 65, 156, 931
Sau96I GGNCC 5 cut(s) 297, 298, 313, 702, 725
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 4 cut(s) 258, 295, 378, 681
SduI GDGCHC 3 cut(s) 301, 343, 869
SfaNI GCATC 6 cut(s) 29, 153, 197, 556, 611, 902
SfcI CTRYAG 1 cut(s) 420
SinI GGWCC 3 cut(s) 313, 702, 725
SmiMI CAYNNNNRTG 2 cut(s) 747, 888
Sse9I AATT 6 cut(s) 181, 457, 532, 772, 871, 886
SsiI CCGC 7 cut(s) 5, 120, 213, 233, 245, 522, 939
StyD4I CCNGG 4 cut(s) 256, 293, 376, 679
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 2 cut(s) 552, 658
TaqI TCGA 3 cut(s) 105, 544, 898
TasI AATT 6 cut(s) 181, 457, 532, 772, 871, 886
TauI GCSGC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 902
Tru9I TTAA 1 cut(s) 902
TscAI CASTG 4 cut(s) 40, 505, 557, 712
TseI GCWGC 4 cut(s) 81, 88, 664, 667
TspDTI ATGAA 2 cut(s) 605, 608
TspRI CASTG 4 cut(s) 40, 505, 557, 712
Van91I CCANNNNNTGG 1 cut(s) 584
VneI GTGCAC 1 cut(s) 865
VpaK11BI GGWCC 3 cut(s) 313, 702, 725
XapI RAATTY 2 cut(s) 457, 772
XceI RCATGY 1 cut(s) 455
XmiI GTMKAC 1 cut(s) 105
Zsp2I ATGCAT 2 cut(s) 190, 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.