MD02G1133300.v1.1

Zn-finger in Ran binding protein and others

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0008648
Physical Location & Seq
Reverse (-)
10777685 .. 10779593
1909 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1133300.v1.1.491

Sequence Viewer

Length: 1056 bp
ATGTGTATTTTGGTGTGGGATGGACTTGTTGGTGTGCATTCTTGGCTGGATTGTGTGTTGGGTGTCTGTGGCAATGGATCAATAGGTTGCACCAACAACAATTATGCATCAAGAGAAAAGTGCAAAAAGTGCGGGCAACCAAAGGAGGTAGCGGCAATGACAGCGGTTGCAATGCCTGGAGCTTCTCTCCCAACTTATTCACATTGTTTTCCCAGGTCCCAAGGAGGACTGGACCAAAAGATGGGTAGTGGAATGATGGCCAATGGTGCTCCCCCACATTTGCTTCCTTTGAACTGGCCTATAGCAGGAGCTGATAAGTTTGGAGTTCAGCCGGCTTCTACTTGGTCTGTAGGTGGAAACCATAATGCTGGAGTTCTACATGCAAACCCTACTAATCAGCTTCTCTCAGTTCCAAAAGGATGGCACAGTGGTGACTGGCTATGCAGTTGCGGTTTCCATAATTACTCATCTCGAACGCAGTGCAAAAAATGTGATGCTTTTCCACCAGCTCTTGGAATGAAGCGATTAGCATCTGAAGAGCTTGTTCATGACTGGGATAACAAGAGACTGAACGTAGGACGTACAGTTGGGCAGCAGCAATCCTATCCTGGGTTTGAGCAAGTGGTAGGGACCAGTGGTAACCTCGCAACTGGACCTTACGCTCCTTATCATCCCAATATAAGCTCAGGCATGGCTCCGAATTTGCAAGTGCGCATGCCATTCACACAGCAGGCATTGCCACCTGCACTCCTTGGAAAAGGAGCAAAGCAATGGCGTAACGGGGATTGGATGTGCACAAATTGCAACAATCATAATTATGCTTCTCGATTGAACTGCAATAGGTTAGTGTATAAACTAAGCATTGATTCCTCTTTTGCGAACATTCGTTACTTCATCCTTTTCCTCGGGTTTAATCCCAACTTTATCATTGGCGTATCAAACTGTTTCCAGTATGGCATGGAATATATCCTGATAGAGCAGCGAAACTTCTTTCTCGATATATGCTGGTGCAAGACCGAAAGAGATGCGACCGCTCAGCCAGTCAATGCCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005642 GO:0005643 GO:0005737 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006403 GO:0006405 GO:0006406 GO:0006464 GO:0006508 GO:0006511 GO:0006606 GO:0006607 GO:0006611 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007088 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0010564 GO:0010638 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016740 GO:0016925 GO:0017016 GO:0017038 GO:0018193 GO:0018205 GO:0019538 GO:0019787 GO:0019789 GO:0019899 GO:0019941 GO:0022402 GO:0030163 GO:0031090 GO:0031267 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032446 GO:0032886 GO:0032991 GO:0033036 GO:0033043 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0042175 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044614 GO:0044615 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0045787 GO:0045840 GO:0045931 GO:0046602 GO:0046604 GO:0046605 GO:0046607 GO:0046907 GO:0048518 GO:0048522 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051020 GO:0051028 GO:0051128 GO:0051130 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051493 GO:0051495 GO:0051603 GO:0051640 GO:0051641 GO:0051642 GO:0051649 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0061842 GO:0065007 GO:0070507 GO:0070647 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0090068 GO:0098589 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903047
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

352

Amino Acids

38.46

Weight (kDa)

8.71

Isoelectric Point (pI)

46.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 751
Acc16I TGCGCA 1 cut(s) 713
Acc36I ACCTGC 1 cut(s) 751
AccB7I CCANNNNNTGG 2 cut(s) 241, 512
AccBSI CCGCTC 1 cut(s) 1034
AciI CCGC 5 cut(s) 132, 152, 164, 450, 1032
AclWI GGATC 1 cut(s) 85
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 1 cut(s) 700
AcuI CTGAAG 1 cut(s) 555
AfaI GTAC 1 cut(s) 583
AfiI CCNNNNNNNGG 4 cut(s) 241, 305, 512, 609
AgsI TTSAA 2 cut(s) 292, 832
AjnI CCWGG 3 cut(s) 175, 212, 607
AleI CACNNNNGTG 1 cut(s) 429
AluBI AGCT 6 cut(s) 182, 311, 400, 509, 541, 684
AluI AGCT 6 cut(s) 182, 311, 400, 509, 541, 684
Alw21I GWGCWC 2 cut(s) 271, 797
Alw26I GTCTC 1 cut(s) 559
Alw44I GTGCAC 1 cut(s) 793
AlwI GGATC 1 cut(s) 85
AlwNI CAGNNNCTG 1 cut(s) 311
Ama87I CYCGRG 1 cut(s) 905
AoxI GGCC 2 cut(s) 258, 296
ApaLI GTGCAC 1 cut(s) 793
ApeKI GCWGC 3 cut(s) 592, 595, 979
ApoI RAATTY 1 cut(s) 700
AspLEI GCGC 1 cut(s) 714
AspS9I GGNCC 4 cut(s) 216, 232, 630, 653
AsuHPI GGTGA 1 cut(s) 443
AvaI CYCGRG 1 cut(s) 905
AvaII GGWCC 4 cut(s) 216, 232, 630, 653
BaeGI GKGCMC 1 cut(s) 797
BalI TGGCCA 1 cut(s) 260
Bbv12I GWGCWC 2 cut(s) 271, 797
BbvI GCAGC 3 cut(s) 604, 607, 991
BccI CCATC 4 cut(s) 14, 235, 250, 414
BcgI CGANNNNNNTGC 6 cut(s) 462, 496, 816, 850, 1007, 1041
BciT130I CCWGG 3 cut(s) 177, 214, 609
BcoDI GTCTC 1 cut(s) 559
BfmI CTRYAG 2 cut(s) 300, 348
BfuAI ACCTGC 1 cut(s) 751
BisI GCNGC 4 cut(s) 153, 593, 596, 980
BlpI GCTNAGC 1 cut(s) 1035
BlsI GCNGC 4 cut(s) 154, 594, 597, 981
Bme1390I CCNGG 3 cut(s) 177, 214, 609
Bme18I GGWCC 4 cut(s) 216, 232, 630, 653
BmeT110I CYCGRG 1 cut(s) 905
BmgT120I GGNCC 4 cut(s) 216, 232, 630, 653
BmiI GGNNCC 3 cut(s) 218, 631, 696
BmrFI CCNGG 3 cut(s) 177, 214, 609
BmrI ACTGGG 1 cut(s) 562
BmsI GCATC 4 cut(s) 116, 484, 539, 1015
BmuI ACTGGG 1 cut(s) 562
BplI GAGNNNNNCTC 2 cut(s) 171, 203
BpmI CTGGAG 2 cut(s) 198, 390
Bpu10I CCTNAGC 1 cut(s) 685
Bpu1102I GCTNAGC 1 cut(s) 1035
BsaBI GATNNNNATC 1 cut(s) 529
BsaJI CCNNGG 5 cut(s) 212, 220, 608, 751, 904
BsaXI ACNNNNNCTCC 2 cut(s) 732, 762
Bsc4I CCNNNNNNNGG 4 cut(s) 241, 305, 512, 609
Bse118I RCCGGY 1 cut(s) 331
Bse1I ACTGG 8 cut(s) 234, 299, 440, 557, 633, 655, 949, 1040
Bse3DI GCAATG 5 cut(s) 79, 162, 177, 734, 776
Bse8I GATNNNNATC 1 cut(s) 529
BseBI CCWGG 3 cut(s) 177, 214, 609
BseDI CCNNGG 5 cut(s) 212, 220, 608, 751, 904
BseGI GGATG 5 cut(s) 25, 425, 670, 795, 894
BseJI GATNNNNATC 1 cut(s) 529
BseLI CCNNNNNNNGG 4 cut(s) 241, 305, 512, 609
BseMI GCAATG 5 cut(s) 79, 162, 177, 734, 776
BseMII CTCAG 3 cut(s) 420, 699, 1049
BseNI ACTGG 8 cut(s) 234, 299, 440, 557, 633, 655, 949, 1040
BseSI GKGCMC 1 cut(s) 797
BseXI GCAGC 3 cut(s) 604, 607, 991
BsgI GTGCAG 1 cut(s) 729
Bsh1285I CGRYCG 1 cut(s) 1032
BshFI GGCC 2 cut(s) 260, 298
BsiEI CGRYCG 1 cut(s) 1032
BsiHKAI GWGCWC 2 cut(s) 271, 797
BsiHKCI CYCGRG 1 cut(s) 905
BsiSI CCGG 1 cut(s) 332
BslFI GGGAC 2 cut(s) 202, 643
BslI CCNNNNNNNGG 4 cut(s) 241, 305, 512, 609
BsmAI GTCTC 1 cut(s) 559
BsmFI GGGAC 2 cut(s) 202, 643
BsmI GAATGC 1 cut(s) 37
BsnI GGCC 2 cut(s) 260, 298
BsoBI CYCGRG 1 cut(s) 905
Bsp1286I GDGCHC 2 cut(s) 271, 797
Bsp143I GATC 1 cut(s) 77
Bsp1720I GCTNAGC 1 cut(s) 1035
BspACI CCGC 5 cut(s) 132, 152, 164, 450, 1032
BspANI GGCC 2 cut(s) 260, 298
BspCNI CTCAG 3 cut(s) 419, 698, 1048
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 3 cut(s) 218, 631, 696
BspMI ACCTGC 1 cut(s) 751
BspPI GGATC 1 cut(s) 85
BspQI GCTCTTC 1 cut(s) 531
BsrBI CCGCTC 1 cut(s) 1034
BsrDI GCAATG 5 cut(s) 79, 162, 177, 734, 776
BsrFI RCCGGY 1 cut(s) 331
BsrI ACTGG 8 cut(s) 234, 299, 440, 557, 633, 655, 949, 1040
BssAI RCCGGY 1 cut(s) 331
BssECI CCNNGG 5 cut(s) 212, 220, 608, 751, 904
BssMI GATC 1 cut(s) 77
BssT1I CCWWGG 2 cut(s) 220, 751
Bst2UI CCWGG 3 cut(s) 177, 214, 609
Bst4CI ACNGT 3 cut(s) 428, 586, 944
Bst6I CTCTTC 1 cut(s) 531
BstAPI GCANNNNNTGC 3 cut(s) 129, 736, 801
BstC8I GCNNGC 4 cut(s) 134, 333, 716, 732
BstDEI CTNAG 4 cut(s) 406, 685, 857, 1035
BstEII GGTNACC 1 cut(s) 638
BstENI CCTNNNNNAGG 1 cut(s) 303
BstF5I GGATG 5 cut(s) 25, 425, 670, 795, 894
BstHHI GCGC 1 cut(s) 714
BstKTI GATC 1 cut(s) 80
BstMAI GTCTC 1 cut(s) 559
BstMBI GATC 1 cut(s) 77
BstMCI CGRYCG 1 cut(s) 1032
BstMWI GCNNNNNNNGC 6 cut(s) 43, 129, 161, 266, 736, 801
BstNI CCWGG 3 cut(s) 177, 214, 609
BstNSI RCATGY 2 cut(s) 383, 718
BstPI GGTNACC 1 cut(s) 638
BstSCI CCNGG 3 cut(s) 175, 212, 607
BstSFI CTRYAG 2 cut(s) 300, 348
BstSLI GKGCMC 1 cut(s) 797
BstV1I GCAGC 3 cut(s) 604, 607, 991
BstXI CCANNNNNNTGG 2 cut(s) 368, 420
BsuRI GGCC 2 cut(s) 260, 298
BtsCI GGATG 5 cut(s) 25, 425, 670, 795, 894
BtsI GCAGTG 1 cut(s) 485
BtsIMutI CAGTG 3 cut(s) 433, 485, 640
BveI ACCTGC 1 cut(s) 751
Cac8I GCNNGC 4 cut(s) 134, 333, 716, 732
CaiI CAGNNNCTG 1 cut(s) 311
CciI TCATGA 1 cut(s) 547
CfoI GCGC 1 cut(s) 714
Cfr10I RCCGGY 1 cut(s) 331
Cfr13I GGNCC 4 cut(s) 216, 232, 630, 653
Csp6I GTAC 1 cut(s) 582
CviAII CATG 6 cut(s) 380, 548, 691, 715, 958, 1051
CviQI GTAC 1 cut(s) 582
DdeI CTNAG 4 cut(s) 406, 685, 857, 1035
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
EaeI YGGCCR 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
Eco130I CCWWGG 2 cut(s) 220, 751
Eco47I GGWCC 4 cut(s) 216, 232, 630, 653
Eco57I CTGAAG 1 cut(s) 555
Eco88I CYCGRG 1 cut(s) 905
Eco91I GGTNACC 1 cut(s) 638
EcoNI CCTNNNNNAGG 1 cut(s) 303
EcoO109I RGGNCCY 1 cut(s) 216
EcoO65I GGTNACC 1 cut(s) 638
EcoRII CCWGG 3 cut(s) 175, 212, 607
EcoT14I CCWWGG 2 cut(s) 220, 751
EcoT22I ATGCAT 1 cut(s) 109
ErhI CCWWGG 2 cut(s) 220, 751
FaeI CATG 6 cut(s) 383, 551, 694, 718, 961, 1054
FaqI GGGAC 2 cut(s) 202, 643
FatI CATG 6 cut(s) 379, 547, 690, 714, 957, 1050
FauI CCCGC 1 cut(s) 125
Fnu4HI GCNGC 4 cut(s) 153, 593, 596, 980
FokI GGATG 5 cut(s) 32, 432, 657, 802, 881
Fsp4HI GCNGC 4 cut(s) 153, 593, 596, 980
FspAI RTGCGCAY 1 cut(s) 713
FspI TGCGCA 1 cut(s) 713
GlaI GCGC 1 cut(s) 713
GluI GCNGC 4 cut(s) 153, 593, 596, 980
GsuI CTGGAG 2 cut(s) 198, 390
HaeIII GGCC 2 cut(s) 260, 298
HapII CCGG 1 cut(s) 332
HhaI GCGC 1 cut(s) 714
Hin1II CATG 6 cut(s) 383, 551, 694, 718, 961, 1054
Hin6I GCGC 1 cut(s) 712
HinP1I GCGC 1 cut(s) 712
HinfI GANTC 1 cut(s) 866
HpaII CCGG 1 cut(s) 332
HphI GGTGA 1 cut(s) 443
Hpy166II GTNNAC 1 cut(s) 795
Hpy188I TCNGA 2 cut(s) 535, 699
Hpy188III TCNNGA 6 cut(s) 111, 471, 548, 825, 970, 995
Hpy8I GTNNAC 1 cut(s) 795
HpyCH4III ACNGT 3 cut(s) 428, 586, 944
HpyCH4IV ACGT 2 cut(s) 573, 580
HpyF10VI GCNNNNNNNGC 6 cut(s) 43, 129, 161, 266, 736, 801
HpyF3I CTNAG 4 cut(s) 406, 685, 857, 1035
HpySE526I ACGT 2 cut(s) 573, 580
Hsp92II CATG 6 cut(s) 383, 551, 694, 718, 961, 1054
HspAI GCGC 1 cut(s) 712
KroI GCCGGC 1 cut(s) 331
KroNI GCCGGC 1 cut(s) 333
Kzo9I GATC 1 cut(s) 77
LguI GCTCTTC 1 cut(s) 531
LmnI GCTCC 6 cut(s) 179, 274, 308, 667, 700, 761
Lsp1109I GCAGC 3 cut(s) 604, 607, 991
LweI GCATC 4 cut(s) 116, 484, 539, 1015
MaeII ACGT 2 cut(s) 573, 580
MaeIII GTNAC 4 cut(s) 431, 638, 776, 887
MalI GATC 1 cut(s) 79
MbiI CCGCTC 1 cut(s) 1034
MboI GATC 1 cut(s) 77
MboII GAAGA 1 cut(s) 548
MhlI GDGCHC 2 cut(s) 271, 797
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 5 cut(s) 100, 460, 700, 799, 814
MluNI TGGCCA 1 cut(s) 260
MnlI CCTC 5 cut(s) 139, 218, 653, 880, 914
Mox20I TGGCCA 1 cut(s) 260
Mph1103I ATGCAT 1 cut(s) 109
MroNI GCCGGC 1 cut(s) 331
MscI TGGCCA 1 cut(s) 260
MseI TTAA 1 cut(s) 912
MslI CAYNNNNRTG 2 cut(s) 429, 816
Msp20I TGGCCA 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 1 cut(s) 332
MspR9I CCNGG 3 cut(s) 177, 214, 609
Mva1269I GAATGC 1 cut(s) 37
MvaI CCWGG 3 cut(s) 177, 214, 609
MwoI GCNNNNNNNGC 6 cut(s) 43, 129, 161, 266, 736, 801
NaeI GCCGGC 1 cut(s) 333
NdeII GATC 1 cut(s) 77
NgoMIV GCCGGC 1 cut(s) 331
NlaIII CATG 6 cut(s) 383, 551, 694, 718, 961, 1054
NlaIV GGNNCC 3 cut(s) 218, 631, 696
NmuCI GTSAC 1 cut(s) 431
NsbI TGCGCA 1 cut(s) 713
NsiI ATGCAT 1 cut(s) 109
NspI RCATGY 2 cut(s) 383, 718
OliI CACNNNNGTG 1 cut(s) 429
PaeI GCATGC 1 cut(s) 718
PagI TCATGA 1 cut(s) 547
PaqCI CACCTGC 1 cut(s) 751
PciSI GCTCTTC 1 cut(s) 531
PctI GAATGC 1 cut(s) 37
PdiI GCCGGC 1 cut(s) 333
PfeI GAWTC 1 cut(s) 866
PflMI CCANNNNNTGG 2 cut(s) 241, 512
PkrI GCNGC 4 cut(s) 154, 594, 597, 981
PpuMI RGGWCCY 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 216
Psp6I CCWGG 3 cut(s) 175, 212, 607
PspEI GGTNACC 1 cut(s) 638
PspGI CCWGG 3 cut(s) 175, 212, 607
PspN4I GGNNCC 3 cut(s) 218, 631, 696
PspPI GGNCC 4 cut(s) 216, 232, 630, 653
PspPPI RGGWCCY 1 cut(s) 216
PsrI GAACNNNNNNTAC 2 cut(s) 872, 904
PstNI CAGNNNCTG 1 cut(s) 311
RsaI GTAC 1 cut(s) 583
RsaNI GTAC 1 cut(s) 582
RseI CAYNNNNRTG 2 cut(s) 429, 816
SapI GCTCTTC 1 cut(s) 531
SaqAI TTAA 1 cut(s) 912
SatI GCNGC 4 cut(s) 153, 593, 596, 980
Sau3AI GATC 1 cut(s) 77
Sau96I GGNCC 4 cut(s) 216, 232, 630, 653
ScrFI CCNGG 3 cut(s) 177, 214, 609
SduI GDGCHC 2 cut(s) 271, 797
SfaNI GCATC 4 cut(s) 116, 484, 539, 1015
SfcI CTRYAG 2 cut(s) 300, 348
SinI GGWCC 4 cut(s) 216, 232, 630, 653
SmiMI CAYNNNNRTG 2 cut(s) 429, 816
SphI GCATGC 1 cut(s) 718
Sse9I AATT 5 cut(s) 100, 460, 700, 799, 814
SsiI CCGC 5 cut(s) 132, 152, 164, 450, 1032
StyD4I CCNGG 3 cut(s) 175, 212, 607
StyI CCWWGG 2 cut(s) 220, 751
TaaI ACNGT 3 cut(s) 428, 586, 944
TaiI ACGT 2 cut(s) 576, 583
TaqI TCGA 3 cut(s) 472, 826, 996
TaqII GACCGA 1 cut(s) 1031
TasI AATT 5 cut(s) 100, 460, 700, 799, 814
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 1 cut(s) 866
Tru1I TTAA 1 cut(s) 912
Tru9I TTAA 1 cut(s) 912
TscAI CASTG 3 cut(s) 433, 485, 640
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 3 cut(s) 592, 595, 979
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 3 cut(s) 533, 536, 883
TspRI CASTG 3 cut(s) 433, 485, 640
Van91I CCANNNNNTGG 2 cut(s) 241, 512
VneI GTGCAC 1 cut(s) 793
VpaK11BI GGWCC 4 cut(s) 216, 232, 630, 653
XagI CCTNNNNNAGG 1 cut(s) 303
XapI RAATTY 1 cut(s) 700
XceI RCATGY 2 cut(s) 383, 718
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.