AT2G18230

Inorganic pyrophosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016505
Physical Location & Seq
Reverse (-)
7931923 .. 7934353
2431 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G18230.1

Sequence Viewer

Length: 657 bp
ATGGCTGAAATCAAGGATGAAGGAAGCGCCAAGGGCTATGCTTTCCCTCTCAGGAACCCTAATGTTACGCTGAATGAGAGAAACTTTGCAGCCTTCACTCACAGATCAGCTGCTGCTCATCCTTGGCATGACTTGGAGATTGGTCCAGAAGCTCCTACTGTTTTCAACTGTGTTGTTGAAATTAGCAAAGGTGGAAAGGTTAAGTACGAGCTAGACAAGAACAGTGGCCTTATTAAGGTTGATCGCGTTCTCTACTCATCCATTGTGTACCCCCACAACTACGGTTTCATCCCTCGAACTATCTGTGAAGACAGTGATCCAATGGATGTCCTGGTACTGATGCAGGAGCCTGTGCTAACCGGATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAGGGTGAGAAAGACGACAAGATCATTGCAGTATGTGCTGATGATCCCGAGTTCCGTCACTACAGAGACATCAAAGAGCTTCCCCCTCACCGTCTAGCTGAAATCCGTCGCTTCTTTGAGGACTACAAGAAGAACGAGAACAAGAAAGTCGACGTTGAAGCTTTCCTTCCCGCTCAAGCTGCCATAGACGCTATCAAGGACTCCATGGATCTTTACGCAGCTTACATCAAAGCTGGCCTGCAACGCTAA

Protein Analysis

218

Amino Acids

24.67

Weight (kDa)

5.72

Isoelectric Point (pI)

33.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyrophosphatase PF00719 57 - 208 3.3e-55 Inorganic pyrophosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18230
fragaria_vesca FvH4_1g12970 FvH4_1g12970
malus_domestica MD02G1144200.v1.1
prunus_persica Prupe.7G157400_v2.0.a1
pyrus_communis pycom02g11410
rosa_chinensis RchiOBHm_Chr2g0101021
rosa_laevigata RLG00000017038
rosa_roxburghii Rroxscaffold_2G00141630
rosa_rugosa Rorug02G0095400
rosa_samantha Rh2BG147700 Rh2CG148900 Rh2DG148200
rosa_wichuraiana Rw2G011190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 581
AccI GTMKAC 1 cut(s) 558
AccII CGCG 1 cut(s) 246
AciI CCGC 1 cut(s) 579
AclWI GGATC 4 cut(s) 311, 370, 446, 624
AfaI GTAC 3 cut(s) 206, 269, 336
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 3 cut(s) 166, 179, 566
AjnI CCWGG 1 cut(s) 330
AluBI AGCT 9 cut(s) 110, 152, 211, 487, 506, 569, 587, 629, 641
AluI AGCT 9 cut(s) 110, 152, 211, 487, 506, 569, 587, 629, 641
Alw26I GTCTC 1 cut(s) 468
AlwI GGATC 4 cut(s) 311, 370, 446, 624
AlwNI CAGNNNCTG 1 cut(s) 113
Ama87I CYCGRG 1 cut(s) 455
AoxI GGCC 2 cut(s) 226, 643
ApeKI GCWGC 5 cut(s) 89, 110, 113, 587, 626
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 143
AsuHPI GGTGA 2 cut(s) 425, 488
AvaI CYCGRG 1 cut(s) 455
AvaII GGWCC 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 379
BbsI GAAGAC 1 cut(s) 315
BbvI GCAGC 5 cut(s) 97, 100, 101, 574, 638
BciT130I CCWGG 1 cut(s) 332
BclI TGATCA 1 cut(s) 406
BcoDI GTCTC 1 cut(s) 468
BfaI CTAG 2 cut(s) 212, 503
BfmI CTRYAG 1 cut(s) 469
BfoI RGCGCY 1 cut(s) 30
BisI GCNGC 5 cut(s) 90, 111, 114, 588, 627
BlsI GCNGC 5 cut(s) 91, 112, 115, 589, 628
Bme1390I CCNGG 1 cut(s) 332
Bme18I GGWCC 1 cut(s) 143
BmeT110I CYCGRG 1 cut(s) 455
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 2 cut(s) 56, 348
BmrFI CCNGG 1 cut(s) 332
BmsI GCATC 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 567
BsaJI CCNNGG 3 cut(s) 30, 122, 612
BsaWI WCCGGW 1 cut(s) 359
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse3DI GCAATG 1 cut(s) 432
BseBI CCWGG 1 cut(s) 332
BseDI CCNNGG 3 cut(s) 30, 122, 612
BseGI GGATG 5 cut(s) 22, 118, 257, 288, 331
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 432
BseMII CTCAG 1 cut(s) 64
BseSI GKGCMC 1 cut(s) 379
BseXI GCAGC 5 cut(s) 97, 100, 101, 574, 638
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 2 cut(s) 228, 645
BsiHKCI CYCGRG 1 cut(s) 455
BsiSI CCGG 1 cut(s) 360
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 1 cut(s) 468
BsnI GGCC 2 cut(s) 228, 645
BsoBI CYCGRG 1 cut(s) 455
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 8 cut(s) 104, 241, 316, 362, 406, 429, 451, 616
Bsp19I CCATGG 1 cut(s) 612
BspACI CCGC 1 cut(s) 579
BspANI GGCC 2 cut(s) 228, 645
BspCNI CTCAG 1 cut(s) 63
BspFNI CGCG 1 cut(s) 246
BspLI GGNNCC 2 cut(s) 56, 348
BspPI GGATC 4 cut(s) 311, 370, 446, 624
BsrBI CCGCTC 1 cut(s) 581
BsrDI GCAATG 1 cut(s) 432
BssECI CCNNGG 3 cut(s) 30, 122, 612
BssMI GATC 8 cut(s) 104, 241, 316, 362, 406, 429, 451, 616
BssT1I CCWWGG 3 cut(s) 30, 122, 612
Bst2UI CCWGG 1 cut(s) 332
Bst4CI ACNGT 6 cut(s) 160, 170, 224, 284, 314, 500
BstAPI GCANNNNNTGC 1 cut(s) 443
BstC8I GCNNGC 2 cut(s) 643, 647
BstDEI CTNAG 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 612
BstENI CCTNNNNNAGG 1 cut(s) 233
BstF5I GGATG 5 cut(s) 22, 118, 257, 288, 331
BstFNI CGCG 1 cut(s) 246
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 8 cut(s) 107, 244, 319, 365, 409, 432, 454, 619
BstMAI GTCTC 1 cut(s) 468
BstMBI GATC 8 cut(s) 104, 241, 316, 362, 406, 429, 451, 616
BstMWI GCNNNNNNNGC 5 cut(s) 33, 443, 587, 596, 651
BstNI CCWGG 1 cut(s) 332
BstSCI CCNGG 1 cut(s) 330
BstSFI CTRYAG 1 cut(s) 469
BstSLI GKGCMC 1 cut(s) 379
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 5 cut(s) 97, 100, 101, 574, 638
BstV2I GAAGAC 1 cut(s) 315
BstX2I RGATCY 1 cut(s) 616
BstYI RGATCY 1 cut(s) 616
BsuRI GGCC 2 cut(s) 228, 645
BtgI CCRYGG 1 cut(s) 612
BtsCI GGATG 5 cut(s) 22, 118, 257, 288, 331
BtsIMutI CAGTG 2 cut(s) 229, 319
Cac8I GCNNGC 2 cut(s) 643, 647
CaiI CAGNNNCTG 1 cut(s) 113
CfoI GCGC 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 143
CseI GACGC 1 cut(s) 605
Csp6I GTAC 3 cut(s) 205, 268, 335
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 3 cut(s) 128, 400, 613
CviQI GTAC 3 cut(s) 205, 268, 335
DdeI CTNAG 1 cut(s) 50
DpnI GATC 8 cut(s) 106, 243, 318, 364, 408, 431, 453, 618
DpnII GATC 8 cut(s) 104, 241, 316, 362, 406, 429, 451, 616
Eco130I CCWWGG 3 cut(s) 30, 122, 612
Eco47I GGWCC 1 cut(s) 143
Eco88I CYCGRG 1 cut(s) 455
EcoNI CCTNNNNNAGG 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 330
EcoT14I CCWWGG 3 cut(s) 30, 122, 612
ErhI CCWWGG 3 cut(s) 30, 122, 612
FaeI CATG 3 cut(s) 131, 403, 616
FaiI YATR 6 cut(s) 39, 129, 401, 442, 593, 614
FalI AAGNNNNNCTT 2 cut(s) 558, 590
FatI CATG 3 cut(s) 127, 399, 612
FauI CCCGC 1 cut(s) 586
FbaI TGATCA 1 cut(s) 406
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 5 cut(s) 90, 111, 114, 588, 627
FokI GGATG 5 cut(s) 29, 105, 244, 275, 338
Fsp4HI GCNGC 5 cut(s) 90, 111, 114, 588, 627
FspBI CTAG 2 cut(s) 212, 503
GlaI GCGC 1 cut(s) 28
GluI GCNGC 5 cut(s) 90, 111, 114, 588, 627
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 2 cut(s) 228, 645
HapII CCGG 1 cut(s) 360
HgaI GACGC 1 cut(s) 605
HhaI GCGC 1 cut(s) 29
Hin1II CATG 3 cut(s) 131, 403, 616
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HindIII AAGCTT 1 cut(s) 567
HinfI GANTC 1 cut(s) 608
HpaII CCGG 1 cut(s) 360
HphI GGTGA 2 cut(s) 425, 488
Hpy166II GTNNAC 2 cut(s) 268, 559
Hpy188III TCNNGA 3 cut(s) 52, 146, 455
Hpy8I GTNNAC 2 cut(s) 268, 559
Hpy99I CGWCG 2 cut(s) 519, 563
HpyAV CCTTC 3 cut(s) 14, 103, 584
HpyCH4III ACNGT 6 cut(s) 160, 170, 224, 284, 314, 500
HpyCH4IV ACGT 1 cut(s) 561
HpyCH4V TGCA 4 cut(s) 89, 343, 437, 649
HpyF10VI GCNNNNNNNGC 5 cut(s) 33, 443, 587, 596, 651
HpyF3I CTNAG 1 cut(s) 50
HpySE526I ACGT 1 cut(s) 561
Hsp92II CATG 3 cut(s) 131, 403, 616
HspAI GCGC 1 cut(s) 27
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 8 cut(s) 104, 241, 316, 362, 406, 429, 451, 616
LmnI GCTCC 2 cut(s) 157, 346
LpnPI CCDG 9 cut(s) 37, 159, 317, 329, 344, 363, 373, 395, 627
Lsp1109I GCAGC 5 cut(s) 97, 100, 101, 574, 638
LweI GCATC 1 cut(s) 330
MaeI CTAG 2 cut(s) 212, 503
MaeII ACGT 1 cut(s) 561
MaeIII GTNAC 2 cut(s) 64, 464
MalI GATC 8 cut(s) 106, 243, 318, 364, 408, 431, 453, 618
MbiI CCGCTC 1 cut(s) 581
MboI GATC 8 cut(s) 104, 241, 316, 362, 406, 429, 451, 616
MboII GAAGA 2 cut(s) 320, 550
MflI RGATCY 1 cut(s) 616
MhlI GDGCHC 1 cut(s) 379
MluCI AATT 1 cut(s) 180
MlyI GAGTC 1 cut(s) 602
MnlI CCTC 5 cut(s) 57, 303, 380, 504, 520
MseI TTAA 2 cut(s) 201, 234
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 1 cut(s) 360
MspR9I CCNGG 1 cut(s) 332
MvaI CCWGG 1 cut(s) 332
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 5 cut(s) 33, 443, 587, 596, 651
NcoI CCATGG 1 cut(s) 612
NdeII GATC 8 cut(s) 104, 241, 316, 362, 406, 429, 451, 616
NlaIII CATG 3 cut(s) 131, 403, 616
NlaIV GGNNCC 2 cut(s) 56, 348
NmuCI GTSAC 1 cut(s) 464
PkrI GCNGC 5 cut(s) 91, 112, 115, 589, 628
PleI GAGTC 1 cut(s) 602
PpsI GAGTC 1 cut(s) 602
Psp6I CCWGG 1 cut(s) 330
PspGI CCWGG 1 cut(s) 330
PspN4I GGNNCC 2 cut(s) 56, 348
PspPI GGNCC 1 cut(s) 143
PstNI CAGNNNCTG 1 cut(s) 113
PsuI RGATCY 1 cut(s) 616
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 3 cut(s) 206, 269, 336
RsaNI GTAC 3 cut(s) 205, 268, 335
SalI GTCGAC 1 cut(s) 557
SaqAI TTAA 2 cut(s) 201, 234
SatI GCNGC 5 cut(s) 90, 111, 114, 588, 627
Sau3AI GATC 8 cut(s) 104, 241, 316, 362, 406, 429, 451, 616
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 1 cut(s) 332
SduI GDGCHC 1 cut(s) 379
SfaNI GCATC 1 cut(s) 330
SfcI CTRYAG 1 cut(s) 469
SinI GGWCC 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
Sse9I AATT 1 cut(s) 180
SsiI CCGC 1 cut(s) 579
SspMI CTAG 2 cut(s) 212, 503
StyD4I CCNGG 1 cut(s) 330
StyI CCWWGG 3 cut(s) 30, 122, 612
TaaI ACNGT 6 cut(s) 160, 170, 224, 284, 314, 500
TaiI ACGT 1 cut(s) 564
TaqI TCGA 2 cut(s) 295, 558
TasI AATT 1 cut(s) 180
Tru1I TTAA 2 cut(s) 201, 234
Tru9I TTAA 2 cut(s) 201, 234
TscAI CASTG 2 cut(s) 229, 319
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 5 cut(s) 89, 110, 113, 587, 626
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 2 cut(s) 33, 277
TspGWI ACGGA 3 cut(s) 362, 452, 503
TspRI CASTG 2 cut(s) 229, 319
VpaK11BI GGWCC 1 cut(s) 143
XagI CCTNNNNNAGG 1 cut(s) 233
XmiI GTMKAC 1 cut(s) 558
XspI CTAG 2 cut(s) 212, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.