RLG00000017038

Soluble inorganic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016505
Physical Location & Seq
Reverse (-)
12328547 .. 12332287
3741 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017038

Sequence Viewer

Length: 756 bp
ATGGATGACCCAGACGCCTGGACAGTTCTAACTGGATTATCAATCCTGAGAATTCAGAGGTGCTTCAGTTTTTGCATTATCGGTAGTCTGTGCAAGGTGTTGAATATGGCCAACAGTGGTGGAGAAGGGAGTGGAAAGAATTCAGGATCCTCATATCAAAGTGTTGCCCTGAATGAAAGGATCCTCTCATCTATGTCGCGGAGATCTGTTGCTGCTCACCCCTGGCATGACTTGGAGATCGGACCTGGTGCACCAGCAGTTTTCAACTGTGTTGTTGAAATTAGCAAAGGCAGCAAGGTCAAGTATGAGCTCGACAAAACAAGTGGCCTCATAAAAGTTGATCGTGTTCTTTACTCATCGGTTGTTTATCCACACAACTATGGTTTCATCCCGCGAACAATTTGTGAGGATAGTGATCCTATGGATGTCCTGGTACTGATGCAGGAGCCCGTGTTACCTGGTTCTTTTGTACGTGCTCGTGCTCTTGGATTGATGCCCATGATTGATCAAGGTGAAAAGGATGACAAAATTATTGCAGTATGTGCTGATGACCCTGAGTTCCGTCATTACAATGACATCAAGGACCTCCCTCCACATCGCCTTGCAGAAATCCGTCGATTCTTTGAGGATTACAAAAAGAATGAGAACAAGGAAGTTGAAGTTGAAGACTTTCTACCCGCTGAGGCTGCCATTGATGCCATCAAATACTCCATGGACCTGTATGCATCTTACATTGTGGAAAGCTTGAGGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Pyrophosphatase

Protein Analysis

252

Amino Acids

28.07

Weight (kDa)

5.12

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyrophosphatase PF00719 90 - 241 1.6e-57 Inorganic pyrophosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18230
fragaria_vesca FvH4_1g12970 FvH4_1g12970
malus_domestica MD02G1144200.v1.1
prunus_persica Prupe.7G157400_v2.0.a1
pyrus_communis pycom02g11410
rosa_chinensis RchiOBHm_Chr2g0101021
rosa_laevigata RLG00000017038
rosa_roxburghii Rroxscaffold_2G00141630
rosa_rugosa Rorug02G0095400
rosa_samantha Rh2BG147700 Rh2CG148900 Rh2DG148200
rosa_wichuraiana Rw2G011190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 199, 394
AciI CCGC 3 cut(s) 199, 392, 678
AclWI GGATC 5 cut(s) 141, 154, 175, 188, 410
AcoI YGGCCR 1 cut(s) 108
AcsI RAATTY 2 cut(s) 51, 139
AcuI CTGAAG 1 cut(s) 49
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 2 cut(s) 435, 471
AgsI TTSAA 5 cut(s) 103, 265, 278, 659, 665
AjnI CCWGG 5 cut(s) 17, 221, 244, 429, 457
AluBI AGCT 2 cut(s) 310, 744
AluI AGCT 2 cut(s) 310, 744
Alw21I GWGCWC 4 cut(s) 253, 312, 478, 484
Alw44I GTGCAC 1 cut(s) 249
AlwI GGATC 5 cut(s) 141, 154, 175, 188, 410
AoxI GGCC 2 cut(s) 108, 325
ApaLI GTGCAC 1 cut(s) 249
ApeKI GCWGC 3 cut(s) 212, 291, 686
ApoI RAATTY 2 cut(s) 51, 139
Asp700I GAANNNNTTC 2 cut(s) 139, 669
AspS9I GGNCC 3 cut(s) 242, 583, 715
AsuHPI GGTGA 2 cut(s) 209, 524
AvaII GGWCC 3 cut(s) 242, 583, 715
BaeGI GKGCMC 1 cut(s) 253
BalI TGGCCA 1 cut(s) 110
BamHI GGATCC 2 cut(s) 146, 180
BanII GRGCYC 2 cut(s) 312, 450
BarI GAAGNNNNNNTAC 2 cut(s) 657, 689
BauI CACGAG 1 cut(s) 477
BbsI GAAGAC 1 cut(s) 672
Bbv12I GWGCWC 4 cut(s) 253, 312, 478, 484
BbvCI CCTCAGC 1 cut(s) 681
BbvI GCAGC 3 cut(s) 199, 303, 673
BccI CCATC 1 cut(s) 707
BciT130I CCWGG 5 cut(s) 19, 223, 246, 431, 459
BclI TGATCA 1 cut(s) 505
BglII AGATCT 1 cut(s) 203
BisI GCNGC 3 cut(s) 213, 292, 687
BlsI GCNGC 3 cut(s) 214, 293, 688
Bme1390I CCNGG 5 cut(s) 19, 223, 246, 431, 459
Bme18I GGWCC 3 cut(s) 242, 583, 715
BmgT120I GGNCC 3 cut(s) 242, 583, 715
BmiI GGNNCC 3 cut(s) 148, 182, 447
BmrFI CCNGG 5 cut(s) 19, 223, 246, 431, 459
BmsI GCATC 4 cut(s) 429, 483, 685, 734
BpiI GAAGAC 1 cut(s) 672
Bpu10I CCTNAGC 1 cut(s) 681
BsaAI YACGTR 1 cut(s) 473
BsaBI GATNNNNATC 1 cut(s) 414
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 2 cut(s) 221, 711
BsaXI ACNNNNNCTCC 2 cut(s) 437, 467
Bse1I ACTGG 1 cut(s) 37
Bse8I GATNNNNATC 1 cut(s) 414
BseBI CCWGG 5 cut(s) 19, 223, 246, 431, 459
BseDI CCNNGG 2 cut(s) 221, 711
BseGI GGATG 4 cut(s) 10, 387, 430, 526
BseJI GATNNNNATC 1 cut(s) 414
BseMII CTCAG 3 cut(s) 38, 546, 672
BseNI ACTGG 1 cut(s) 37
BseSI GKGCMC 1 cut(s) 253
BseXI GCAGC 3 cut(s) 199, 303, 673
Bsh1236I CGCG 2 cut(s) 199, 394
BshFI GGCC 2 cut(s) 110, 327
BsiHKAI GWGCWC 4 cut(s) 253, 312, 478, 484
BsnI GGCC 2 cut(s) 110, 327
Bsp1286I GDGCHC 5 cut(s) 253, 312, 450, 478, 484
Bsp143I GATC 7 cut(s) 146, 180, 203, 237, 340, 415, 505
Bsp19I CCATGG 1 cut(s) 711
BspACI CCGC 3 cut(s) 199, 392, 678
BspANI GGCC 2 cut(s) 110, 327
BspCNI CTCAG 3 cut(s) 39, 547, 673
BspFNI CGCG 2 cut(s) 199, 394
BspLI GGNNCC 3 cut(s) 148, 182, 447
BspPI GGATC 5 cut(s) 141, 154, 175, 188, 410
BsrI ACTGG 1 cut(s) 37
BssECI CCNNGG 2 cut(s) 221, 711
BssMI GATC 7 cut(s) 146, 180, 203, 237, 340, 415, 505
BssNI GRCGYC 1 cut(s) 15
BssSI CACGAG 1 cut(s) 477
BssT1I CCWWGG 1 cut(s) 711
Bst2BI CACGAG 1 cut(s) 477
Bst2UI CCWGG 5 cut(s) 19, 223, 246, 431, 459
Bst4CI ACNGT 3 cut(s) 25, 116, 269
BstACI GRCGYC 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 542
BstBAI YACGTR 1 cut(s) 473
BstDEI CTNAG 3 cut(s) 47, 555, 681
BstDSI CCRYGG 1 cut(s) 711
BstF5I GGATG 4 cut(s) 10, 387, 430, 526
BstFNI CGCG 2 cut(s) 199, 394
BstKTI GATC 7 cut(s) 149, 183, 206, 240, 343, 418, 508
BstMBI GATC 7 cut(s) 146, 180, 203, 237, 340, 415, 505
BstMWI GCNNNNNNNGC 4 cut(s) 291, 542, 686, 695
BstNI CCWGG 5 cut(s) 19, 223, 246, 431, 459
BstSCI CCNGG 5 cut(s) 17, 221, 244, 429, 457
BstSLI GKGCMC 1 cut(s) 253
BstUI CGCG 2 cut(s) 199, 394
BstV1I GCAGC 3 cut(s) 199, 303, 673
BstV2I GAAGAC 1 cut(s) 672
BstX2I RGATCY 3 cut(s) 146, 180, 203
BstXI CCANNNNNNTGG 1 cut(s) 18
BstYI RGATCY 3 cut(s) 146, 180, 203
BsuRI GGCC 2 cut(s) 110, 327
BtgI CCRYGG 1 cut(s) 711
BtgZI GCGATG 1 cut(s) 581
BtsCI GGATG 4 cut(s) 10, 387, 430, 526
BtsIMutI CAGTG 1 cut(s) 121
Cfr13I GGNCC 3 cut(s) 242, 583, 715
CseI GACGC 1 cut(s) 23
CsiI ACCWGGT 2 cut(s) 244, 457
Csp6I GTAC 2 cut(s) 434, 470
CspCI CAANNNNNGTGG 4 cut(s) 100, 135, 304, 339
CviAII CATG 3 cut(s) 227, 499, 712
CviJI RGCY 6 cut(s) 110, 310, 327, 448, 686, 744
CviKI_1 RGCY 6 cut(s) 110, 310, 327, 448, 686, 744
CviQI GTAC 2 cut(s) 434, 470
DdeI CTNAG 3 cut(s) 47, 555, 681
DpnI GATC 7 cut(s) 148, 182, 205, 239, 342, 417, 507
DpnII GATC 7 cut(s) 146, 180, 203, 237, 340, 415, 505
EaeI YGGCCR 1 cut(s) 108
Ecl136II GAGCTC 1 cut(s) 310
Eco130I CCWWGG 1 cut(s) 711
Eco24I GRGCYC 2 cut(s) 312, 450
Eco47I GGWCC 3 cut(s) 242, 583, 715
Eco53kI GAGCTC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 49
EcoICRI GAGCTC 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 583
EcoRI GAATTC 2 cut(s) 51, 139
EcoRII CCWGG 5 cut(s) 17, 221, 244, 429, 457
EcoT14I CCWWGG 1 cut(s) 711
EcoT22I ATGCAT 1 cut(s) 727
EcoT38I GRGCYC 2 cut(s) 312, 450
ErhI CCWWGG 1 cut(s) 711
FaeI CATG 3 cut(s) 230, 502, 715
FatI CATG 3 cut(s) 226, 498, 711
FauI CCCGC 2 cut(s) 399, 685
FbaI TGATCA 1 cut(s) 505
Fnu4HI GCNGC 3 cut(s) 213, 292, 687
FokI GGATG 4 cut(s) 17, 374, 437, 533
FriOI GRGCYC 2 cut(s) 312, 450
Fsp4HI GCNGC 3 cut(s) 213, 292, 687
GluI GCNGC 3 cut(s) 213, 292, 687
HaeIII GGCC 2 cut(s) 110, 327
HgaI GACGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 3 cut(s) 230, 502, 715
HindIII AAGCTT 1 cut(s) 742
HinfI GANTC 1 cut(s) 618
HphI GGTGA 2 cut(s) 209, 524
Hpy166II GTNNAC 1 cut(s) 251
Hpy188I TCNGA 2 cut(s) 57, 242
Hpy188III TCNNGA 2 cut(s) 46, 144
Hpy8I GTNNAC 1 cut(s) 251
Hpy99I CGWCG 1 cut(s) 618
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 3 cut(s) 25, 116, 269
HpyCH4IV ACGT 1 cut(s) 472
HpyCH4V TGCA 7 cut(s) 75, 93, 251, 442, 536, 605, 725
HpyF10VI GCNNNNNNNGC 4 cut(s) 291, 542, 686, 695
HpyF3I CTNAG 3 cut(s) 47, 555, 681
HpySE526I ACGT 1 cut(s) 472
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 3 cut(s) 230, 502, 715
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 7 cut(s) 146, 180, 203, 237, 340, 415, 505
LmnI GCTCC 1 cut(s) 445
Lsp1109I GCAGC 3 cut(s) 199, 303, 673
LweI GCATC 4 cut(s) 429, 483, 685, 734
MabI ACCWGGT 2 cut(s) 244, 457
MaeII ACGT 1 cut(s) 472
MaeIII GTNAC 1 cut(s) 453
MalI GATC 7 cut(s) 148, 182, 205, 239, 342, 417, 507
MboI GATC 7 cut(s) 146, 180, 203, 237, 340, 415, 505
MboII GAAGA 1 cut(s) 677
MflI RGATCY 3 cut(s) 146, 180, 203
MhlI GDGCHC 5 cut(s) 253, 312, 450, 478, 484
MlsI TGGCCA 1 cut(s) 110
MluCI AATT 5 cut(s) 51, 139, 279, 399, 528
MluNI TGGCCA 1 cut(s) 110
Mox20I TGGCCA 1 cut(s) 110
Mph1103I ATGCAT 1 cut(s) 727
MroXI GAANNNNTTC 2 cut(s) 139, 669
MscI TGGCCA 1 cut(s) 110
MslI CAYNNNNRTG 2 cut(s) 378, 570
Msp20I TGGCCA 1 cut(s) 110
MspA1I CMGCKG 1 cut(s) 680
MspR9I CCNGG 5 cut(s) 19, 223, 246, 431, 459
MvaI CCWGG 5 cut(s) 19, 223, 246, 431, 459
MvnI CGCG 2 cut(s) 199, 394
MwoI GCNNNNNNNGC 4 cut(s) 291, 542, 686, 695
NcoI CCATGG 1 cut(s) 711
NdeII GATC 7 cut(s) 146, 180, 203, 237, 340, 415, 505
NlaIII CATG 3 cut(s) 230, 502, 715
NlaIV GGNNCC 3 cut(s) 148, 182, 447
NsiI ATGCAT 1 cut(s) 727
PdmI GAANNNNTTC 2 cut(s) 139, 669
PfeI GAWTC 1 cut(s) 618
PkrI GCNGC 3 cut(s) 214, 293, 688
Ppu21I YACGTR 1 cut(s) 473
PpuMI RGGWCCY 1 cut(s) 583
Psp124BI GAGCTC 1 cut(s) 312
Psp5II RGGWCCY 1 cut(s) 583
Psp6I CCWGG 5 cut(s) 17, 221, 244, 429, 457
PspGI CCWGG 5 cut(s) 17, 221, 244, 429, 457
PspN4I GGNNCC 3 cut(s) 148, 182, 447
PspPI GGNCC 3 cut(s) 242, 583, 715
PspPPI RGGWCCY 1 cut(s) 583
PsuI RGATCY 3 cut(s) 146, 180, 203
RsaI GTAC 2 cut(s) 435, 471
RsaNI GTAC 2 cut(s) 434, 470
RseI CAYNNNNRTG 2 cut(s) 378, 570
SacI GAGCTC 1 cut(s) 312
SatI GCNGC 3 cut(s) 213, 292, 687
Sau3AI GATC 7 cut(s) 146, 180, 203, 237, 340, 415, 505
Sau96I GGNCC 3 cut(s) 242, 583, 715
ScrFI CCNGG 5 cut(s) 19, 223, 246, 431, 459
SduI GDGCHC 5 cut(s) 253, 312, 450, 478, 484
SexAI ACCWGGT 2 cut(s) 244, 457
SfaNI GCATC 4 cut(s) 429, 483, 685, 734
SinI GGWCC 3 cut(s) 242, 583, 715
SmiMI CAYNNNNRTG 2 cut(s) 378, 570
SmlI CTYRAG 1 cut(s) 745
SmoI CTYRAG 1 cut(s) 745
Sse9I AATT 5 cut(s) 51, 139, 279, 399, 528
SsiI CCGC 3 cut(s) 199, 392, 678
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 5 cut(s) 17, 221, 244, 429, 457
StyI CCWWGG 1 cut(s) 711
TaaI ACNGT 3 cut(s) 25, 116, 269
TaiI ACGT 1 cut(s) 475
TaqI TCGA 2 cut(s) 312, 616
TasI AATT 5 cut(s) 51, 139, 279, 399, 528
TfiI GAWTC 1 cut(s) 618
TscAI CASTG 1 cut(s) 121
TseI GCWGC 3 cut(s) 212, 291, 686
TspDTI ATGAA 2 cut(s) 189, 376
TspGWI ACGGA 2 cut(s) 551, 602
TspRI CASTG 1 cut(s) 121
VneI GTGCAC 1 cut(s) 249
VpaK11BI GGWCC 3 cut(s) 242, 583, 715
XapI RAATTY 2 cut(s) 51, 139
XmnI GAANNNNTTC 2 cut(s) 139, 669
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.