pycom02g11410

Soluble inorganic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0016505
Physical Location & Seq
Reverse (-)
8071048 .. 8074545
3498 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g11410.6

Sequence Viewer

Length: 792 bp
ATGTTTTATTTAGTGAGATCAGCCGTCTTCGTCCCTCCTCCCTATAAATTAAGCTCACAGCTCTCACAGTCCCTTTCCATTTTTCTCACACAAATTCTAGAATCCATTTTTTCAGCTGCTCTGCAACTGTTAGTGGAAAGGGTGAACATGGCTAACAATGATGGAGAAGGGAGTGGAAAGAATTCGGGGTCATCTCACGTTAAACTCAATGAAAGAATCCTTTCTTCAATGTCAAGGAGATCTGTTGCTGCTCATCCCTGGCATGACTTAGAGATTGGACCTGGTGCACCAGCAGTTTTCAACTGTGTTGTTGAAATTAGCAAAGGCAGCAAGGTTAAGTATGAGCTCGACAAGACAACTGGCCTTATAGTAGTTGACCGTGTGCTTTACTCATCGGTTGTTTACCCGCACAACTATGGTTTCATCCCACGAACAATCTGTGAGGATAGTGATCCAATGGATGTCCTAGTACTGATGCAGGAGCCCGTGATACCTGGTTCTTTCCTTCGTGCTCGCGCTATTGGATTAATGCCCATGATTGATCAAGGTGAAAAGGATGACAAGATTATTGCAGTATGTGCTGATGACCCTGAGTTCCGCCATATCACTGACCTCAAGGAGCTTCCTCCACATCGCCTTGCAGAAATTCGTCGGTTCTTTGAGGACTACAAAAAGAACGAGAACAAGGAAGTTGAGGTTGAAGACTTTCTACCGGCTGAGGCTGCCATCGAGGCCATCAGATACTCCATGAACCTGTATGCATCTTACATCGTGGAGAGCTTGAGGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Pyrophosphatase

Protein Analysis

264

Amino Acids

29.58

Weight (kDa)

5.34

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18230
fragaria_vesca FvH4_1g12970 FvH4_1g12970
malus_domestica MD02G1144200.v1.1
prunus_persica Prupe.7G157400_v2.0.a1
pyrus_communis pycom02g11410
rosa_chinensis RchiOBHm_Chr2g0101021
rosa_laevigata RLG00000017038
rosa_roxburghii Rroxscaffold_2G00141630
rosa_rugosa Rorug02G0095400
rosa_samantha Rh2BG147700 Rh2CG148900 Rh2DG148200
rosa_wichuraiana Rw2G011190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 516
AciI CCGC 2 cut(s) 407, 598
AclWI GGATC 1 cut(s) 446
AcsI RAATTY 3 cut(s) 93, 181, 645
AfaI GTAC 1 cut(s) 471
AgsI TTSAA 4 cut(s) 228, 301, 314, 701
AjnI CCWGG 3 cut(s) 257, 280, 493
AluBI AGCT 6 cut(s) 54, 61, 116, 346, 622, 780
AluI AGCT 6 cut(s) 54, 61, 116, 346, 622, 780
Alw21I GWGCWC 3 cut(s) 289, 348, 514
Alw44I GTGCAC 1 cut(s) 285
AlwI GGATC 1 cut(s) 446
AoxI GGCC 2 cut(s) 361, 732
ApaLI GTGCAC 1 cut(s) 285
ApeKI GCWGC 4 cut(s) 116, 248, 327, 722
ApoI RAATTY 3 cut(s) 93, 181, 645
AseI ATTAAT 1 cut(s) 527
Asp700I GAANNNNTTC 3 cut(s) 181, 220, 705
AspLEI GCGC 1 cut(s) 518
AspS9I GGNCC 1 cut(s) 278
AsuHPI GGTGA 2 cut(s) 154, 560
AvaII GGWCC 1 cut(s) 278
BaeGI GKGCMC 1 cut(s) 289
BanII GRGCYC 2 cut(s) 348, 486
BarI GAAGNNNNNNTAC 2 cut(s) 693, 725
BbsI GAAGAC 2 cut(s) 19, 708
Bbv12I GWGCWC 3 cut(s) 289, 348, 514
BbvCI CCTCAGC 1 cut(s) 717
BbvI GCAGC 4 cut(s) 103, 235, 339, 709
BccI CCATC 3 cut(s) 155, 734, 743
BceAI ACGGC 1 cut(s) 8
BciT130I CCWGG 3 cut(s) 259, 282, 495
BclI TGATCA 1 cut(s) 541
BfaI CTAG 2 cut(s) 98, 467
BglI GCCNNNNNGGC 1 cut(s) 731
BglII AGATCT 1 cut(s) 239
BisI GCNGC 4 cut(s) 117, 249, 328, 723
BlsI GCNGC 4 cut(s) 118, 250, 329, 724
BmcAI AGTACT 1 cut(s) 471
Bme1390I CCNGG 3 cut(s) 259, 282, 495
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 483
BmrFI CCNGG 3 cut(s) 259, 282, 495
BmsI GCATC 2 cut(s) 465, 770
BpiI GAAGAC 2 cut(s) 19, 708
Bpu10I CCTNAGC 1 cut(s) 717
BpuEI CTTGAG 1 cut(s) 599
BsaBI GATNNNNATC 1 cut(s) 450
BsaJI CCNNGG 1 cut(s) 257
Bse118I RCCGGY 1 cut(s) 712
Bse1I ACTGG 1 cut(s) 364
Bse8I GATNNNNATC 1 cut(s) 450
BseBI CCWGG 3 cut(s) 259, 282, 495
BseDI CCNNGG 1 cut(s) 257
BseGI GGATG 4 cut(s) 253, 423, 466, 562
BseJI GATNNNNATC 1 cut(s) 450
BseMII CTCAG 2 cut(s) 582, 708
BseNI ACTGG 1 cut(s) 364
BseRI GAGGAG 1 cut(s) 27
BseSI GKGCMC 1 cut(s) 289
BseXI GCAGC 4 cut(s) 103, 235, 339, 709
Bsh1236I CGCG 1 cut(s) 516
BshFI GGCC 2 cut(s) 363, 734
BsiHKAI GWGCWC 3 cut(s) 289, 348, 514
BsiSI CCGG 1 cut(s) 713
BslFI GGGAC 2 cut(s) 17, 55
BsmFI GGGAC 2 cut(s) 17, 55
BsnI GGCC 2 cut(s) 363, 734
Bsp1286I GDGCHC 4 cut(s) 289, 348, 486, 514
Bsp143I GATC 4 cut(s) 17, 239, 451, 541
BspACI CCGC 2 cut(s) 407, 598
BspANI GGCC 2 cut(s) 363, 734
BspCNI CTCAG 2 cut(s) 583, 709
BspFNI CGCG 1 cut(s) 516
BspLI GGNNCC 1 cut(s) 483
BspPI GGATC 1 cut(s) 446
BsrFI RCCGGY 1 cut(s) 712
BsrI ACTGG 1 cut(s) 364
BssAI RCCGGY 1 cut(s) 712
BssECI CCNNGG 1 cut(s) 257
BssMI GATC 4 cut(s) 17, 239, 451, 541
Bst2UI CCWGG 3 cut(s) 259, 282, 495
Bst4CI ACNGT 4 cut(s) 69, 129, 305, 380
BstAPI GCANNNNNTGC 1 cut(s) 578
BstC8I GCNNGC 1 cut(s) 514
BstDEI CTNAG 3 cut(s) 268, 591, 717
BstF5I GGATG 4 cut(s) 253, 423, 466, 562
BstFNI CGCG 1 cut(s) 516
BstHHI GCGC 1 cut(s) 518
BstKTI GATC 4 cut(s) 20, 242, 454, 544
BstMBI GATC 4 cut(s) 17, 239, 451, 541
BstMWI GCNNNNNNNGC 4 cut(s) 327, 578, 722, 731
BstNI CCWGG 3 cut(s) 259, 282, 495
BstSCI CCNGG 3 cut(s) 257, 280, 493
BstSLI GKGCMC 1 cut(s) 289
BstUI CGCG 1 cut(s) 516
BstV1I GCAGC 4 cut(s) 103, 235, 339, 709
BstV2I GAAGAC 2 cut(s) 19, 708
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
BsuRI GGCC 2 cut(s) 363, 734
BtgZI GCGATG 1 cut(s) 617
BtsCI GGATG 4 cut(s) 253, 423, 466, 562
BtsIMutI CAGTG 1 cut(s) 606
Cac8I GCNNGC 1 cut(s) 514
CfoI GCGC 1 cut(s) 518
Cfr10I RCCGGY 1 cut(s) 712
Cfr13I GGNCC 1 cut(s) 278
CsiI ACCWGGT 2 cut(s) 280, 493
Csp6I GTAC 1 cut(s) 470
CviAII CATG 4 cut(s) 148, 263, 535, 748
CviQI GTAC 1 cut(s) 470
DdeI CTNAG 3 cut(s) 268, 591, 717
DpnI GATC 4 cut(s) 19, 241, 453, 543
DpnII GATC 4 cut(s) 17, 239, 451, 541
EciI GGCGGA 1 cut(s) 587
Ecl136II GAGCTC 1 cut(s) 346
Eco24I GRGCYC 2 cut(s) 348, 486
Eco47I GGWCC 1 cut(s) 278
Eco53kI GAGCTC 1 cut(s) 346
EcoICRI GAGCTC 1 cut(s) 346
EcoRI GAATTC 1 cut(s) 181
EcoRII CCWGG 3 cut(s) 257, 280, 493
EcoT22I ATGCAT 1 cut(s) 763
EcoT38I GRGCYC 2 cut(s) 348, 486
FaeI CATG 4 cut(s) 151, 266, 538, 751
FaqI GGGAC 2 cut(s) 17, 55
FatI CATG 4 cut(s) 147, 262, 534, 747
FauI CCCGC 1 cut(s) 414
FbaI TGATCA 1 cut(s) 541
Fnu4HI GCNGC 4 cut(s) 117, 249, 328, 723
FokI GGATG 4 cut(s) 240, 410, 473, 569
FriOI GRGCYC 2 cut(s) 348, 486
Fsp4HI GCNGC 4 cut(s) 117, 249, 328, 723
FspBI CTAG 2 cut(s) 98, 467
GlaI GCGC 1 cut(s) 517
GluI GCNGC 4 cut(s) 117, 249, 328, 723
HaeIII GGCC 2 cut(s) 363, 734
HapII CCGG 1 cut(s) 713
HhaI GCGC 1 cut(s) 518
Hin1II CATG 4 cut(s) 151, 266, 538, 751
Hin6I GCGC 1 cut(s) 516
HinP1I GCGC 1 cut(s) 516
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 2 cut(s) 101, 216
HpaII CCGG 1 cut(s) 713
HphI GGTGA 2 cut(s) 154, 560
Hpy166II GTNNAC 4 cut(s) 145, 287, 376, 403
Hpy188I TCNGA 1 cut(s) 740
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 4 cut(s) 145, 287, 376, 403
Hpy99I CGWCG 1 cut(s) 654
HpyAV CCTTC 2 cut(s) 161, 515
HpyCH4III ACNGT 4 cut(s) 69, 129, 305, 380
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 6 cut(s) 124, 287, 478, 572, 641, 761
HpyF10VI GCNNNNNNNGC 4 cut(s) 327, 578, 722, 731
HpyF3I CTNAG 3 cut(s) 268, 591, 717
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 4 cut(s) 151, 266, 538, 751
HspAI GCGC 1 cut(s) 516
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 4 cut(s) 17, 239, 451, 541
LmnI GCTCC 2 cut(s) 481, 619
Lsp1109I GCAGC 4 cut(s) 103, 235, 339, 709
LweI GCATC 2 cut(s) 465, 770
MabI ACCWGGT 2 cut(s) 280, 493
MaeI CTAG 2 cut(s) 98, 467
MaeII ACGT 1 cut(s) 198
MalI GATC 4 cut(s) 19, 241, 453, 543
MboI GATC 4 cut(s) 17, 239, 451, 541
MboII GAAGA 3 cut(s) 19, 216, 713
MflI RGATCY 1 cut(s) 239
MhlI GDGCHC 4 cut(s) 289, 348, 486, 514
MluCI AATT 5 cut(s) 47, 93, 181, 315, 645
Mph1103I ATGCAT 1 cut(s) 763
MroXI GAANNNNTTC 3 cut(s) 181, 220, 705
MseI TTAA 4 cut(s) 50, 201, 336, 527
MslI CAYNNNNRTG 1 cut(s) 414
MspA1I CMGCKG 1 cut(s) 116
MspI CCGG 1 cut(s) 713
MspR9I CCNGG 3 cut(s) 259, 282, 495
MvaI CCWGG 3 cut(s) 259, 282, 495
MvnI CGCG 1 cut(s) 516
MwoI GCNNNNNNNGC 4 cut(s) 327, 578, 722, 731
NdeII GATC 4 cut(s) 17, 239, 451, 541
NlaIII CATG 4 cut(s) 151, 266, 538, 751
NlaIV GGNNCC 1 cut(s) 483
NsiI ATGCAT 1 cut(s) 763
PdmI GAANNNNTTC 3 cut(s) 181, 220, 705
PfeI GAWTC 2 cut(s) 101, 216
PkrI GCNGC 4 cut(s) 118, 250, 329, 724
PshBI ATTAAT 1 cut(s) 527
Psp124BI GAGCTC 1 cut(s) 348
Psp6I CCWGG 3 cut(s) 257, 280, 493
PspGI CCWGG 3 cut(s) 257, 280, 493
PspN4I GGNNCC 1 cut(s) 483
PspPI GGNCC 1 cut(s) 278
PsuI RGATCY 1 cut(s) 239
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 1 cut(s) 471
RsaNI GTAC 1 cut(s) 470
RseI CAYNNNNRTG 1 cut(s) 414
SacI GAGCTC 1 cut(s) 348
SaqAI TTAA 4 cut(s) 50, 201, 336, 527
SatI GCNGC 4 cut(s) 117, 249, 328, 723
Sau3AI GATC 4 cut(s) 17, 239, 451, 541
Sau96I GGNCC 1 cut(s) 278
ScaI AGTACT 1 cut(s) 471
ScrFI CCNGG 3 cut(s) 259, 282, 495
SduI GDGCHC 4 cut(s) 289, 348, 486, 514
SexAI ACCWGGT 2 cut(s) 280, 493
SfaNI GCATC 2 cut(s) 465, 770
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 2 cut(s) 614, 781
SmoI CTYRAG 2 cut(s) 614, 781
Sse9I AATT 5 cut(s) 47, 93, 181, 315, 645
SsiI CCGC 2 cut(s) 407, 598
SspMI CTAG 2 cut(s) 98, 467
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 3 cut(s) 257, 280, 493
TaaI ACNGT 4 cut(s) 69, 129, 305, 380
TaiI ACGT 1 cut(s) 201
TaqI TCGA 2 cut(s) 348, 729
TasI AATT 5 cut(s) 47, 93, 181, 315, 645
TatI WGTACW 1 cut(s) 469
TfiI GAWTC 2 cut(s) 101, 216
Tru1I TTAA 4 cut(s) 50, 201, 336, 527
Tru9I TTAA 4 cut(s) 50, 201, 336, 527
TscAI CASTG 1 cut(s) 613
TseI GCWGC 4 cut(s) 116, 248, 327, 722
TspDTI ATGAA 3 cut(s) 225, 412, 764
TspRI CASTG 1 cut(s) 613
VneI GTGCAC 1 cut(s) 285
VpaK11BI GGWCC 1 cut(s) 278
VspI ATTAAT 1 cut(s) 527
XapI RAATTY 3 cut(s) 93, 181, 645
XbaI TCTAGA 1 cut(s) 97
XmnI GAANNNNTTC 3 cut(s) 181, 220, 705
XspI CTAG 2 cut(s) 98, 467
ZrmI AGTACT 1 cut(s) 471
Zsp2I ATGCAT 1 cut(s) 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.