Rh2BG147700

Soluble inorganic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0016505
Physical Location & Seq
Reverse (-)
12704613 .. 12708525
3913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG147700.1

Sequence Viewer

Length: 540 bp
ATGCTTGATGTTTTCATCTCTGCAGGACCTGGTGCACCAGCAGTTTTCAACTGTGTTGTTGAAATTAGCAAAGGCAGCAAGGTCAAGTATGAGCTCGACAAAACAAGTGGCCTCATAAAAGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACACAACTATGGTTTCATCCCGCGAACAATTTGTGAGGATAGTGATCCTATGGATGTCCTGGTACTGATGCAGGAGCCCGTGTTACCTGGTTCTTTTGTACGTGCTCGTGCTCTTGGATTGATGCCCATGATTGATCAAGGTGAAAAGGATGACAAAATTATTGCAGTATGTGCTGATGACCCTGAGTTCCATCATTACAATGACATCAAGGACCTTCCTCCACATCGCCTTGCAGAAATCCGTCGATTCTTTGAGGATTACAAAAAGAATGAGAACAAGGAAGTTGAAGTTGAAGACTTTCTACCCGCTGAGGCTGCCATTGATGCCATCAAATACTCCATGGACCTGTATGCATCTTACATTGTGGAAAGCTTGAGGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Pyrophosphatase

Protein Analysis

179

Amino Acids

20.26

Weight (kDa)

4.78

Isoelectric Point (pI)

33.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyrophosphatase PF00719 18 - 169 5.1e-58 Inorganic pyrophosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18230
fragaria_vesca FvH4_1g12970 FvH4_1g12970
malus_domestica MD02G1144200.v1.1
prunus_persica Prupe.7G157400_v2.0.a1
pyrus_communis pycom02g11410
rosa_chinensis RchiOBHm_Chr2g0101021
rosa_laevigata RLG00000017038
rosa_roxburghii Rroxscaffold_2G00141630
rosa_rugosa Rorug02G0095400
rosa_samantha Rh2BG147700 Rh2CG148900 Rh2DG148200
rosa_wichuraiana Rw2G011190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 178
AciI CCGC 2 cut(s) 176, 462
AclWI GGATC 1 cut(s) 194
AfaI GTAC 2 cut(s) 219, 255
AgsI TTSAA 4 cut(s) 49, 62, 443, 449
AjnI CCWGG 3 cut(s) 28, 213, 241
AluBI AGCT 2 cut(s) 94, 528
AluI AGCT 2 cut(s) 94, 528
Alw21I GWGCWC 4 cut(s) 37, 96, 262, 268
Alw44I GTGCAC 1 cut(s) 33
AlwI GGATC 1 cut(s) 194
AlwNI CAGNNNCTG 1 cut(s) 29
AoxI GGCC 1 cut(s) 109
ApaLI GTGCAC 1 cut(s) 33
ApeKI GCWGC 2 cut(s) 75, 470
Asp700I GAANNNNTTC 1 cut(s) 453
AspS9I GGNCC 3 cut(s) 26, 367, 499
AsuHPI GGTGA 1 cut(s) 308
AvaII GGWCC 3 cut(s) 26, 367, 499
BaeGI GKGCMC 1 cut(s) 37
BanII GRGCYC 2 cut(s) 96, 234
BarI GAAGNNNNNNTAC 2 cut(s) 441, 473
BauI CACGAG 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 456
Bbv12I GWGCWC 4 cut(s) 37, 96, 262, 268
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 2 cut(s) 87, 457
BccI CCATC 2 cut(s) 354, 491
BciT130I CCWGG 3 cut(s) 30, 215, 243
BclI TGATCA 1 cut(s) 289
BfmI CTRYAG 1 cut(s) 21
BisI GCNGC 2 cut(s) 76, 471
BlsI GCNGC 2 cut(s) 77, 472
Bme1390I CCNGG 3 cut(s) 30, 215, 243
Bme18I GGWCC 3 cut(s) 26, 367, 499
BmgT120I GGNCC 3 cut(s) 26, 367, 499
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 3 cut(s) 30, 215, 243
BmsI GCATC 4 cut(s) 213, 267, 469, 518
BpiI GAAGAC 1 cut(s) 456
Bpu10I CCTNAGC 1 cut(s) 465
BsaAI YACGTR 1 cut(s) 257
BsaBI GATNNNNATC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 495
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bse8I GATNNNNATC 1 cut(s) 198
BseBI CCWGG 3 cut(s) 30, 215, 243
BseDI CCNNGG 1 cut(s) 495
BseGI GGATG 3 cut(s) 171, 214, 310
BseJI GATNNNNATC 1 cut(s) 198
BseMII CTCAG 2 cut(s) 330, 456
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 2 cut(s) 87, 457
Bsh1236I CGCG 1 cut(s) 178
BshFI GGCC 1 cut(s) 111
BsiHKAI GWGCWC 4 cut(s) 37, 96, 262, 268
BsnI GGCC 1 cut(s) 111
Bsp1286I GDGCHC 5 cut(s) 37, 96, 234, 262, 268
Bsp143I GATC 3 cut(s) 124, 199, 289
Bsp19I CCATGG 1 cut(s) 495
BspACI CCGC 2 cut(s) 176, 462
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 2 cut(s) 331, 457
BspFNI CGCG 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 231
BspMAI CTGCAG 1 cut(s) 25
BspPI GGATC 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 495
BssMI GATC 3 cut(s) 124, 199, 289
BssSI CACGAG 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 495
Bst2BI CACGAG 1 cut(s) 261
Bst2UI CCWGG 3 cut(s) 30, 215, 243
Bst4CI ACNGT 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 326
BstBAI YACGTR 1 cut(s) 257
BstDEI CTNAG 2 cut(s) 339, 465
BstDSI CCRYGG 1 cut(s) 495
BstF5I GGATG 3 cut(s) 171, 214, 310
BstFNI CGCG 1 cut(s) 178
BstKTI GATC 3 cut(s) 127, 202, 292
BstMBI GATC 3 cut(s) 124, 199, 289
BstMWI GCNNNNNNNGC 4 cut(s) 75, 326, 470, 479
BstNI CCWGG 3 cut(s) 30, 215, 243
BstSCI CCNGG 3 cut(s) 28, 213, 241
BstSFI CTRYAG 1 cut(s) 21
BstSLI GKGCMC 1 cut(s) 37
BstUI CGCG 1 cut(s) 178
BstV1I GCAGC 2 cut(s) 87, 457
BstV2I GAAGAC 1 cut(s) 456
BsuRI GGCC 1 cut(s) 111
BtgI CCRYGG 1 cut(s) 495
BtgZI GCGATG 1 cut(s) 365
BtsCI GGATG 3 cut(s) 171, 214, 310
CaiI CAGNNNCTG 1 cut(s) 29
Cfr13I GGNCC 3 cut(s) 26, 367, 499
CsiI ACCWGGT 2 cut(s) 28, 241
Csp6I GTAC 2 cut(s) 218, 254
CspCI CAANNNNNGTGG 2 cut(s) 88, 123
CviAII CATG 2 cut(s) 283, 496
CviJI RGCY 5 cut(s) 94, 111, 232, 470, 528
CviKI_1 RGCY 5 cut(s) 94, 111, 232, 470, 528
CviQI GTAC 2 cut(s) 218, 254
DdeI CTNAG 2 cut(s) 339, 465
DpnI GATC 3 cut(s) 126, 201, 291
DpnII GATC 3 cut(s) 124, 199, 289
Ecl136II GAGCTC 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 495
Eco24I GRGCYC 2 cut(s) 96, 234
Eco47I GGWCC 3 cut(s) 26, 367, 499
Eco53kI GAGCTC 1 cut(s) 94
EcoICRI GAGCTC 1 cut(s) 94
EcoO109I RGGNCCY 2 cut(s) 26, 367
EcoRII CCWGG 3 cut(s) 28, 213, 241
EcoT14I CCWWGG 1 cut(s) 495
EcoT22I ATGCAT 1 cut(s) 511
EcoT38I GRGCYC 2 cut(s) 96, 234
ErhI CCWWGG 1 cut(s) 495
FaeI CATG 2 cut(s) 286, 499
FaiI YATR 8 cut(s) 90, 116, 165, 206, 284, 325, 497, 507
FatI CATG 2 cut(s) 282, 495
FauI CCCGC 2 cut(s) 183, 469
FbaI TGATCA 1 cut(s) 289
Fnu4HI GCNGC 2 cut(s) 76, 471
FokI GGATG 3 cut(s) 158, 221, 317
FriOI GRGCYC 2 cut(s) 96, 234
Fsp4HI GCNGC 2 cut(s) 76, 471
GluI GCNGC 2 cut(s) 76, 471
HaeIII GGCC 1 cut(s) 111
Hin1II CATG 2 cut(s) 286, 499
HindIII AAGCTT 1 cut(s) 526
HinfI GANTC 1 cut(s) 402
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 1 cut(s) 35
Hpy8I GTNNAC 1 cut(s) 35
Hpy99I CGWCG 1 cut(s) 402
HpyAV CCTTC 1 cut(s) 380
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 6 cut(s) 23, 35, 226, 320, 389, 509
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 326, 470, 479
HpyF3I CTNAG 2 cut(s) 339, 465
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 2 cut(s) 286, 499
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 3 cut(s) 124, 199, 289
LmnI GCTCC 1 cut(s) 229
Lsp1109I GCAGC 2 cut(s) 87, 457
LweI GCATC 4 cut(s) 213, 267, 469, 518
MabI ACCWGGT 2 cut(s) 28, 241
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 1 cut(s) 237
MalI GATC 3 cut(s) 126, 201, 291
MboI GATC 3 cut(s) 124, 199, 289
MboII GAAGA 1 cut(s) 461
MhlI GDGCHC 5 cut(s) 37, 96, 234, 262, 268
MluCI AATT 3 cut(s) 63, 183, 312
MnlI CCTC 6 cut(s) 122, 184, 384, 403, 460, 525
Mph1103I ATGCAT 1 cut(s) 511
MroXI GAANNNNTTC 1 cut(s) 453
MslI CAYNNNNRTG 2 cut(s) 162, 354
MspA1I CMGCKG 1 cut(s) 464
MspR9I CCNGG 3 cut(s) 30, 215, 243
MvaI CCWGG 3 cut(s) 30, 215, 243
MvnI CGCG 1 cut(s) 178
MwoI GCNNNNNNNGC 4 cut(s) 75, 326, 470, 479
NcoI CCATGG 1 cut(s) 495
NdeII GATC 3 cut(s) 124, 199, 289
NlaIII CATG 2 cut(s) 286, 499
NlaIV GGNNCC 1 cut(s) 231
NsiI ATGCAT 1 cut(s) 511
PdmI GAANNNNTTC 1 cut(s) 453
PfeI GAWTC 1 cut(s) 402
PkrI GCNGC 2 cut(s) 77, 472
Ppu21I YACGTR 1 cut(s) 257
PpuMI RGGWCCY 2 cut(s) 26, 367
Psp124BI GAGCTC 1 cut(s) 96
Psp5II RGGWCCY 2 cut(s) 26, 367
Psp6I CCWGG 3 cut(s) 28, 213, 241
PspGI CCWGG 3 cut(s) 28, 213, 241
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 3 cut(s) 26, 367, 499
PspPPI RGGWCCY 2 cut(s) 26, 367
PstI CTGCAG 1 cut(s) 25
PstNI CAGNNNCTG 1 cut(s) 29
RsaI GTAC 2 cut(s) 219, 255
RsaNI GTAC 2 cut(s) 218, 254
RseI CAYNNNNRTG 2 cut(s) 162, 354
SacI GAGCTC 1 cut(s) 96
SatI GCNGC 2 cut(s) 76, 471
Sau3AI GATC 3 cut(s) 124, 199, 289
Sau96I GGNCC 3 cut(s) 26, 367, 499
ScrFI CCNGG 3 cut(s) 30, 215, 243
SduI GDGCHC 5 cut(s) 37, 96, 234, 262, 268
SetI ASST 9 cut(s) 31, 84, 96, 244, 259, 298, 372, 504, 530
SexAI ACCWGGT 2 cut(s) 28, 241
SfaNI GCATC 4 cut(s) 213, 267, 469, 518
SfcI CTRYAG 1 cut(s) 21
SinI GGWCC 3 cut(s) 26, 367, 499
SmiMI CAYNNNNRTG 2 cut(s) 162, 354
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
Sse9I AATT 3 cut(s) 63, 183, 312
SsiI CCGC 2 cut(s) 176, 462
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 3 cut(s) 28, 213, 241
StyI CCWWGG 1 cut(s) 495
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 1 cut(s) 259
TaqI TCGA 2 cut(s) 96, 400
TasI AATT 3 cut(s) 63, 183, 312
TfiI GAWTC 1 cut(s) 402
TseI GCWGC 2 cut(s) 75, 470
TspDTI ATGAA 2 cut(s) 4, 160
TspGWI ACGGA 1 cut(s) 386
VneI GTGCAC 1 cut(s) 33
VpaK11BI GGWCC 3 cut(s) 26, 367, 499
XmnI GAANNNNTTC 1 cut(s) 453
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.