Rorug02G0095400

Soluble inorganic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0016505
Physical Location & Seq
Reverse (-)
7804666 .. 7806541
1876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0095400.1

Sequence Viewer

Length: 738 bp
ATGTTGAAGTTGGGCAAGAAACCTCTCCCAATGATAGGAAAGCTGTCAGAAATGTTGGTTTCGGGCAACCGTGCCGGGTTTCTCGACGTGGGGTCGAGCCCTAGAGGACCACTAGACCTCAAGATGCAATCTCCTTCTCCGAGTCCTAGAGGGTTGAAGAGCTATGATGTTGGTGGTGTTGGCTTGGGCATAGTAGCTGCCTTGGAAAAGTCGAGTCACAATGGACGTGAGATTCTTGCAAAGTATTGTGTTTGTAGTCACAGTTCGAACCGCTCCGACCCGATTCCGGTTAACTCCGGTCAAAAATCCGATACAACGGGTCTTCATGAACTTGAGGAAGAAGACAGTGAGGAGAATTATACCTTTGTGACTTGCCATGGAAGAAACAAGTCCATCACCAAGGTCTACTATGATGGAGTTGTTCGTACTGACCACCATGTTAGTTTTGAACCCTGTCATGTTAACCATAACCATAAACAAAAACAAGCTCCTGTGTATCCCACGTCGGATTTTCTCAGCTCATGCCATTTGTGCAGCAAAAAGCTTCATGGCAAAGATATTTACATGTACAGGGGAGAGAAGGCATTTTGTAGCACAGAGTGTAGAGCAACACAGATCATGAGCGATGAGCGCAAAGAACAGTGCAGATCAGATGCCTCAAGAAGATCTGCAGATGTTTCGAGCTCGCCTTATTCGAGAGATCAGATCTTCTTCTCTACTGGTATTCTTGCAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Pyrophosphatase

Protein Analysis

245

Amino Acids

27.06

Weight (kDa)

8.51

Isoelectric Point (pI)

59.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 164 - 212 3.8e-23 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18230
fragaria_vesca FvH4_1g12970 FvH4_1g12970
malus_domestica MD02G1144200.v1.1
prunus_persica Prupe.7G157400_v2.0.a1
pyrus_communis pycom02g11410
rosa_chinensis RchiOBHm_Chr2g0101021
rosa_laevigata RLG00000017038
rosa_roxburghii Rroxscaffold_2G00141630
rosa_rugosa Rorug02G0095400
rosa_samantha Rh2BG147700 Rh2CG148900 Rh2DG148200
rosa_wichuraiana Rw2G011190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 273
AccI GTMKAC 1 cut(s) 405
AciI CCGC 1 cut(s) 271
AdeI CACNNNGTG 1 cut(s) 600
AfaI GTAC 2 cut(s) 427, 569
AfiI CCNNNNNNNGG 2 cut(s) 35, 286
AflIII ACRYGT 1 cut(s) 564
AgsI TTSAA 3 cut(s) 7, 157, 449
AhdI GACNNNNNGTC 1 cut(s) 91
AjiI CACGTC 3 cut(s) 88, 227, 504
AluBI AGCT 7 cut(s) 43, 162, 197, 488, 519, 544, 684
AluI AGCT 7 cut(s) 43, 162, 197, 488, 519, 544, 684
Alw21I GWGCWC 1 cut(s) 686
ApeKI GCWGC 2 cut(s) 197, 534
AspLEI GCGC 1 cut(s) 633
AspS9I GGNCC 1 cut(s) 107
AsuC2I CCSGG 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 388
AsuII TTCGAA 1 cut(s) 266
AvaII GGWCC 1 cut(s) 107
BanII GRGCYC 2 cut(s) 101, 686
BbsI GAAGAC 2 cut(s) 314, 348
Bbv12I GWGCWC 1 cut(s) 686
BbvI GCAGC 2 cut(s) 184, 546
BccI CCATC 2 cut(s) 401, 407
BcgI CGANNNNNNTGC 2 cut(s) 660, 694
BciVI GTATCC 1 cut(s) 507
BcnI CCSGG 1 cut(s) 76
BfaI CTAG 3 cut(s) 102, 113, 147
BfmI CTRYAG 1 cut(s) 669
BfuI GTATCC 1 cut(s) 507
BglII AGATCT 2 cut(s) 665, 705
BisI GCNGC 2 cut(s) 198, 535
BlsI GCNGC 2 cut(s) 199, 536
Bme1390I CCNGG 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 107
BmeRI GACNNNNNGTC 1 cut(s) 91
BmgBI CACGTC 3 cut(s) 88, 227, 504
BmgT120I GGNCC 1 cut(s) 107
BmrFI CCNGG 1 cut(s) 76
BmsI GCATC 2 cut(s) 114, 643
BpiI GAAGAC 2 cut(s) 314, 348
Bpu14I TTCGAA 1 cut(s) 266
BpuEI CTTGAG 3 cut(s) 104, 353, 643
BpuMI CCSGG 1 cut(s) 76
BsaJI CCNNGG 3 cut(s) 201, 376, 399
BsaWI WCCGGW 2 cut(s) 286, 296
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 286
Bse1I ACTGG 1 cut(s) 724
BseDI CCNNGG 3 cut(s) 201, 376, 399
BseLI CCNNNNNNNGG 2 cut(s) 35, 286
BseMII CTCAG 1 cut(s) 529
BseNI ACTGG 1 cut(s) 724
BseRI GAGGAG 1 cut(s) 365
BseXI GCAGC 2 cut(s) 184, 546
BsgI GTGCAG 2 cut(s) 553, 664
BsiHKAI GWGCWC 1 cut(s) 686
BsiSI CCGG 3 cut(s) 75, 287, 297
BslI CCNNNNNNNGG 2 cut(s) 35, 286
Bsp119I TTCGAA 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 101, 686
Bsp1407I TGTACA 1 cut(s) 567
Bsp143I GATC 5 cut(s) 615, 647, 665, 700, 705
Bsp19I CCATGG 1 cut(s) 376
BspACI CCGC 1 cut(s) 271
BspCNI CTCAG 1 cut(s) 528
BspHI TCATGA 2 cut(s) 325, 618
BspMAI CTGCAG 1 cut(s) 673
BspQI GCTCTTC 1 cut(s) 152
BspT104I TTCGAA 1 cut(s) 266
BsrBI CCGCTC 1 cut(s) 273
BsrGI TGTACA 1 cut(s) 567
BsrI ACTGG 1 cut(s) 724
BssECI CCNNGG 3 cut(s) 201, 376, 399
BssMI GATC 5 cut(s) 615, 647, 665, 700, 705
BssT1I CCWWGG 3 cut(s) 201, 376, 399
Bst4CI ACNGT 4 cut(s) 71, 263, 347, 642
Bst6I CTCTTC 1 cut(s) 152
BstAUI TGTACA 1 cut(s) 567
BstBI TTCGAA 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 686
BstDEI CTNAG 1 cut(s) 515
BstDSI CCRYGG 1 cut(s) 376
BstHHI GCGC 1 cut(s) 633
BstKTI GATC 5 cut(s) 618, 650, 668, 703, 708
BstMBI GATC 5 cut(s) 615, 647, 665, 700, 705
BstMWI GCNNNNNNNGC 2 cut(s) 531, 630
BstNSI RCATGY 1 cut(s) 568
BstSCI CCNGG 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 669
BstV1I GCAGC 2 cut(s) 184, 546
BstV2I GAAGAC 2 cut(s) 314, 348
BstX2I RGATCY 2 cut(s) 665, 705
BstYI RGATCY 2 cut(s) 665, 705
BsuI GTATCC 1 cut(s) 507
BtgI CCRYGG 1 cut(s) 376
BtgZI GCGATG 1 cut(s) 639
BtrI CACGTC 3 cut(s) 88, 227, 504
BtsIMutI CAGTG 2 cut(s) 352, 647
Cac8I GCNNGC 1 cut(s) 686
CciI TCATGA 2 cut(s) 325, 618
CfoI GCGC 1 cut(s) 633
Cfr13I GGNCC 1 cut(s) 107
Csp6I GTAC 2 cut(s) 426, 568
CviAII CATG 8 cut(s) 326, 377, 437, 458, 522, 548, 565, 619
CviJI RGCY 9 cut(s) 43, 99, 162, 183, 197, 488, 519, 544, 684
CviKI_1 RGCY 9 cut(s) 43, 99, 162, 183, 197, 488, 519, 544, 684
CviQI GTAC 2 cut(s) 426, 568
DdeI CTNAG 1 cut(s) 515
DpnI GATC 5 cut(s) 617, 649, 667, 702, 707
DpnII GATC 5 cut(s) 615, 647, 665, 700, 705
DraIII CACNNNGTG 1 cut(s) 600
DriI GACNNNNNGTC 1 cut(s) 91
Eam1104I CTCTTC 1 cut(s) 152
Eam1105I GACNNNNNGTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 152
Ecl136II GAGCTC 1 cut(s) 684
Eco130I CCWWGG 3 cut(s) 201, 376, 399
Eco24I GRGCYC 2 cut(s) 101, 686
Eco47I GGWCC 1 cut(s) 107
Eco53kI GAGCTC 1 cut(s) 684
EcoICRI GAGCTC 1 cut(s) 684
EcoT14I CCWWGG 3 cut(s) 201, 376, 399
EcoT38I GRGCYC 2 cut(s) 101, 686
ErhI CCWWGG 3 cut(s) 201, 376, 399
FaeI CATG 8 cut(s) 329, 380, 440, 461, 525, 551, 568, 622
FatI CATG 8 cut(s) 325, 376, 436, 457, 521, 547, 564, 618
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 2 cut(s) 198, 535
FriOI GRGCYC 2 cut(s) 101, 686
Fsp4HI GCNGC 2 cut(s) 198, 535
FspBI CTAG 3 cut(s) 102, 113, 147
GlaI GCGC 1 cut(s) 632
GluI GCNGC 2 cut(s) 198, 535
HapII CCGG 3 cut(s) 75, 287, 297
HhaI GCGC 1 cut(s) 633
Hin1II CATG 8 cut(s) 329, 380, 440, 461, 525, 551, 568, 622
Hin6I GCGC 1 cut(s) 631
HinP1I GCGC 1 cut(s) 631
HincII GTYRAC 2 cut(s) 292, 463
HindII GTYRAC 2 cut(s) 292, 463
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 4 cut(s) 142, 214, 232, 283
HpaI GTTAAC 2 cut(s) 292, 463
HpaII CCGG 3 cut(s) 75, 287, 297
HphI GGTGA 1 cut(s) 388
Hpy166II GTNNAC 3 cut(s) 292, 406, 463
Hpy188I TCNGA 7 cut(s) 49, 141, 277, 310, 508, 652, 705
Hpy188III TCNNGA 6 cut(s) 83, 121, 326, 619, 660, 696
Hpy8I GTNNAC 3 cut(s) 292, 406, 463
Hpy99I CGWCG 2 cut(s) 89, 508
HpyAV CCTTC 2 cut(s) 144, 574
HpyCH4III ACNGT 4 cut(s) 71, 263, 347, 642
HpyCH4IV ACGT 3 cut(s) 87, 226, 503
HpyCH4V TGCA 6 cut(s) 127, 239, 534, 645, 671, 731
HpyF10VI GCNNNNNNNGC 2 cut(s) 531, 630
HpyF3I CTNAG 1 cut(s) 515
HpySE526I ACGT 3 cut(s) 87, 226, 503
Hsp92II CATG 8 cut(s) 329, 380, 440, 461, 525, 551, 568, 622
HspAI GCGC 1 cut(s) 631
KspAI GTTAAC 2 cut(s) 292, 463
Kzo9I GATC 5 cut(s) 615, 647, 665, 700, 705
LguI GCTCTTC 1 cut(s) 152
LmnI GCTCC 2 cut(s) 278, 493
LpnPI CCDG 7 cut(s) 88, 300, 310, 466, 504, 556, 705
Lsp1109I GCAGC 2 cut(s) 184, 546
LweI GCATC 2 cut(s) 114, 643
MaeI CTAG 3 cut(s) 102, 113, 147
MaeII ACGT 3 cut(s) 87, 226, 503
MaeIII GTNAC 3 cut(s) 215, 257, 367
MalI GATC 5 cut(s) 617, 649, 667, 702, 707
MbiI CCGCTC 1 cut(s) 273
MboI GATC 5 cut(s) 615, 647, 665, 700, 705
MboII GAAGA 8 cut(s) 169, 314, 350, 353, 393, 675, 700, 703
MflI RGATCY 2 cut(s) 665, 705
MhlI GDGCHC 2 cut(s) 101, 686
MluCI AATT 2 cut(s) 355, 732
MlyI GAGTC 2 cut(s) 151, 223
MmeI TCCRAC 2 cut(s) 300, 486
MnlI CCTC 7 cut(s) 33, 98, 128, 143, 328, 343, 667
MseI TTAA 2 cut(s) 291, 462
MspI CCGG 3 cut(s) 75, 287, 297
MspR9I CCNGG 1 cut(s) 76
MwoI GCNNNNNNNGC 2 cut(s) 531, 630
NciI CCSGG 1 cut(s) 76
NcoI CCATGG 1 cut(s) 376
NdeII GATC 5 cut(s) 615, 647, 665, 700, 705
NlaIII CATG 8 cut(s) 329, 380, 440, 461, 525, 551, 568, 622
NmuCI GTSAC 3 cut(s) 215, 257, 367
NspI RCATGY 1 cut(s) 568
NspV TTCGAA 1 cut(s) 266
PagI TCATGA 2 cut(s) 325, 618
PciI ACATGT 1 cut(s) 564
PciSI GCTCTTC 1 cut(s) 152
PcsI WCGNNNNNNNCGW 1 cut(s) 692
PfeI GAWTC 2 cut(s) 232, 283
PkrI GCNGC 2 cut(s) 199, 536
PleI GAGTC 2 cut(s) 150, 222
PpsI GAGTC 2 cut(s) 150, 222
PscI ACATGT 1 cut(s) 564
Psp124BI GAGCTC 1 cut(s) 686
PspPI GGNCC 1 cut(s) 107
PsrI GAACNNNNNNTAC 2 cut(s) 247, 279
PstI CTGCAG 1 cut(s) 673
PsuI RGATCY 2 cut(s) 665, 705
RsaI GTAC 2 cut(s) 427, 569
RsaNI GTAC 2 cut(s) 426, 568
SacI GAGCTC 1 cut(s) 686
SapI GCTCTTC 1 cut(s) 152
SaqAI TTAA 2 cut(s) 291, 462
SatI GCNGC 2 cut(s) 198, 535
Sau3AI GATC 5 cut(s) 615, 647, 665, 700, 705
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 2 cut(s) 151, 223
ScrFI CCNGG 1 cut(s) 76
SduI GDGCHC 2 cut(s) 101, 686
SfaNI GCATC 2 cut(s) 114, 643
SfcI CTRYAG 1 cut(s) 669
SfuI TTCGAA 1 cut(s) 266
SinI GGWCC 1 cut(s) 107
SmlI CTYRAG 3 cut(s) 119, 332, 658
SmoI CTYRAG 3 cut(s) 119, 332, 658
Sse9I AATT 2 cut(s) 355, 732
SsiI CCGC 1 cut(s) 271
SspMI CTAG 3 cut(s) 102, 113, 147
SstI GAGCTC 1 cut(s) 686
StyD4I CCNGG 1 cut(s) 74
StyI CCWWGG 3 cut(s) 201, 376, 399
TaaI ACNGT 4 cut(s) 71, 263, 347, 642
TaiI ACGT 3 cut(s) 90, 229, 506
TaqI TCGA 6 cut(s) 84, 95, 212, 266, 680, 695
TasI AATT 2 cut(s) 355, 732
TatI WGTACW 1 cut(s) 567
TfiI GAWTC 2 cut(s) 232, 283
Tru1I TTAA 2 cut(s) 291, 462
Tru9I TTAA 2 cut(s) 291, 462
TscAI CASTG 2 cut(s) 352, 647
TseFI GTSAC 3 cut(s) 215, 257, 367
TseI GCWGC 2 cut(s) 197, 534
Tsp45I GTSAC 3 cut(s) 215, 257, 367
TspDTI ATGAA 3 cut(s) 314, 342, 536
TspRI CASTG 2 cut(s) 352, 647
VpaK11BI GGWCC 1 cut(s) 107
XceI RCATGY 1 cut(s) 568
XmiI GTMKAC 1 cut(s) 405
XspI CTAG 3 cut(s) 102, 113, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.