Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004045

Physical Location & Seq

Genomic Coordinates Reverse (-)

7989476 .. 7990586

Gene Structure 1111 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G18400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGAAGCCAAGTTTTTCCGGTTCTTGAAGATTGTTGGAGTTGGATACAAAGCTAGAGCTGAGGAAGCAGGGCGTTTCTTATACCTCAAATTGGGTTACAGTCACGAAGTCGAACTTGCGGTTCCTCCAGCGGTTCGAGTCTTTTGTTTCAAGAACAATGTGGTTTGCTGCACTGGAATCGACAAGCAAAGAGTGCATCAGTTTGCTGCAACGGTAAGGAGTTGCAAACCCCCTGAACCTTATAAGGGCAAAGGCATAATGTACACTGATGAAGTCGTCAAGAAGAAACAAGGAAAGAAGTCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

102

Amino Acids

11.59

Weight (kDa)

9.78

Isoelectric Point (pI)

23.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6	PF00347	12 - 88	1.9e-20	Ribosomal protein L6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18400
fragaria_vesca	FvH4_2g13340 FvH4_5g39530
malus_domestica	MD05G1029600.v1.1
prunus_persica	Prupe.7G092200_v2.0.a1 Prupe.7G092200_v2.0.a1 Prupe.7G092200_v2.0.a1 Prupe.7G092200_v2.0.a1 Prupe.7G092200_v2.0.a1 Prupe.7G092200_v2.0.a1
pyrus_communis	pycom05g02090
rosa_chinensis	RchiOBHm_Chr6g0274821 RchiOBHm_Chr7g0241841
rosa_laevigata	RLG00000000539
rosa_multiflora	Rmu_sc0001865.1_g000008
rosa_roxburghii	Rroxscaffold_3G00218620 Rroxscaffold_7G00193930
rosa_rugosa	Rorug06G0084700 Rorug06G0084700 Rorug06G0084800 Rorug06G0084900 Rorug07G0347900
rosa_samantha	Rh6AG200500 Rh6BG203900 Rh6CG204100 Rh6CG204200 Rh6DG195500 Rh7AG502000 Rh7BG473400 Rh7CG518500 Rh7DG487300
rosa_wichuraiana	Rw6G017440 Rw7G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	243
AciI	CCGC	2 cut(s)	119, 131
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	2 cut(s)	91, 245
AgsI	TTSAA	2 cut(s)	28, 151
AluBI	AGCT	2 cut(s)	53, 59
AluI	AGCT	2 cut(s)	53, 59
ApeKI	GCWGC	2 cut(s)	168, 206
BbvCI	CCTCAGC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	155, 193
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciVI	GTATCC	1 cut(s)	38
BfaI	CTAG	1 cut(s)	54
BfuI	GTATCC	1 cut(s)	38
BisI	GCNGC	2 cut(s)	169, 207
BlsI	GCNGC	2 cut(s)	170, 208
BmiI	GGNNCC	1 cut(s)	123
BmsI	GCATC	1 cut(s)	205
BpmI	CTGGAG	1 cut(s)	111
Bpu10I	CCTNAGC	1 cut(s)	60
BsaWI	WCCGGW	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 245
Bse1I	ACTGG	1 cut(s)	178
BseLI	CCNNNNNNNGG	2 cut(s)	91, 245
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	178
BseXI	GCAGC	2 cut(s)	155, 193
BsgI	GTGCAG	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	91, 245
Bsp1407I	TGTACA	1 cut(s)	261
BspACI	CCGC	2 cut(s)	119, 131
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	123
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	178
Bst4CI	ACNGT	2 cut(s)	101, 214
BstAPI	GCANNNNNTGC	1 cut(s)	193
BstAUI	TGTACA	1 cut(s)	261
BstDEI	CTNAG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 193
BstV1I	GCAGC	2 cut(s)	155, 193
BsuI	GTATCC	1 cut(s)	38
BtsIMutI	CAGTG	2 cut(s)	171, 264
Csp6I	GTAC	1 cut(s)	262
CviJI	RGCY	3 cut(s)	8, 53, 59
CviKI_1	RGCY	3 cut(s)	8, 53, 59
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	1 cut(s)	60
FaiI	YATR	3 cut(s)	82, 243, 257
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
Fnu4HI	GCNGC	2 cut(s)	169, 207
Fsp4HI	GCNGC	2 cut(s)	169, 207
FspBI	CTAG	1 cut(s)	54
GluI	GCNGC	2 cut(s)	169, 207
GsuI	CTGGAG	1 cut(s)	111
HapII	CCGG	1 cut(s)	19
HinfI	GANTC	2 cut(s)	138, 177
HpaII	CCGG	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	264
Hpy188III	TCNNGA	4 cut(s)	25, 104, 151, 280
Hpy8I	GTNNAC	1 cut(s)	264
HpyCH4III	ACNGT	2 cut(s)	101, 214
HpyCH4V	TGCA	4 cut(s)	171, 196, 209, 225
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 193
HpyF3I	CTNAG	1 cut(s)	60
LpnPI	CCDG	5 cut(s)	32, 54, 141, 159, 246
Lsp1109I	GCAGC	2 cut(s)	155, 193
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	54
MaeIII	GTNAC	2 cut(s)	95, 101
MboII	GAAGA	2 cut(s)	40, 295
MluCI	AATT	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	147
MmeI	TCCRAC	2 cut(s)	16, 22
MnlI	CCTC	3 cut(s)	55, 95, 135
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	1 cut(s)	19
MwoI	GCNNNNNNNGC	2 cut(s)	65, 193
NlaIV	GGNNCC	1 cut(s)	123
NmuCI	GTSAC	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	170, 208
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PsiI	TTATAA	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	123
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SatI	GCNGC	2 cut(s)	169, 207
SchI	GAGTC	1 cut(s)	147
SetI	ASST	4 cut(s)	55, 61, 87, 241
SfaNI	GCATC	1 cut(s)	205
Sse9I	AATT	1 cut(s)	89
SsiI	CCGC	2 cut(s)	119, 131
SspMI	CTAG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	101, 214
TaqI	TCGA	3 cut(s)	111, 136, 180
TasI	AATT	1 cut(s)	89
TatI	WGTACW	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	177
TscAI	CASTG	2 cut(s)	178, 271
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	2 cut(s)	168, 206
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	285
TspRI	CASTG	2 cut(s)	178, 271
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.