RLG00000000539

Belongs to the universal ribosomal protein uL6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004045
Physical Location & Seq
Reverse (-)
1843597 .. 1844380
784 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000539

Sequence Viewer

Length: 351 bp
ATGCTAAACCCTAGCCTCCCGACGCCGGGAACGACAACAACGGTCATTGCAGGCAGATCAAACACAAGAAAGATCGTGGGAGTGGGGTACAAAGCAAGAGCAGAATCTCAGGGGAGGCTGCTGTATCTGAAATTAGGCTACAGTCATGAGGTTGAACTCACAGTTCCACCTGCGGTTCGTGTATTCTGCTTCAAGAACAATGTGGTTTGCTGCACCGGAATTGATAAGAACAGGGTGCACCAGTTTGCTGCTGCTGTTCGCAGTTGTAAGCCACCTGAAGTTTACAAAGGCAAGGGCATTATGTACATTGATGAAGTCATCAAGAAGAAACAAGGAAAGAAGTCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6

Protein Analysis

117

Amino Acids

12.78

Weight (kDa)

9.98

Isoelectric Point (pI)

24.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6 PF00347 26 - 102 5.3e-19 Ribosomal protein L6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 178
Acc36I ACCTGC 1 cut(s) 178
AciI CCGC 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 297
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 2 cut(s) 89, 305
AfiI CCNNNNNNNGG 2 cut(s) 25, 26
AgsI TTSAA 2 cut(s) 155, 193
Alw21I GWGCWC 1 cut(s) 240
Alw44I GTGCAC 1 cut(s) 236
ApaLI GTGCAC 1 cut(s) 236
ApeKI GCWGC 4 cut(s) 118, 210, 248, 251
AsuC2I CCSGG 1 cut(s) 27
BaeGI GKGCMC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 4 cut(s) 105, 197, 235, 238
BcnI CCSGG 1 cut(s) 27
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 139
BfuAI ACCTGC 1 cut(s) 178
BisI GCNGC 4 cut(s) 119, 211, 249, 252
BlsI GCNGC 4 cut(s) 120, 212, 250, 253
Bme1390I CCNGG 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 23
BsaWI WCCGGW 1 cut(s) 215
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 26
Bse1I ACTGG 1 cut(s) 241
Bse3DI GCAATG 1 cut(s) 45
BseLI CCNNNNNNNGG 2 cut(s) 25, 26
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 241
BseSI GKGCMC 1 cut(s) 240
BseXI GCAGC 4 cut(s) 105, 197, 235, 238
BsgI GTGCAG 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 2 cut(s) 26, 216
BslI CCNNNNNNNGG 2 cut(s) 25, 26
Bsp1286I GDGCHC 1 cut(s) 240
Bsp1407I TGTACA 1 cut(s) 303
Bsp143I GATC 2 cut(s) 56, 72
BspACI CCGC 1 cut(s) 173
BspCNI CTCAG 1 cut(s) 121
BspHI TCATGA 1 cut(s) 145
BspMI ACCTGC 1 cut(s) 178
BsrDI GCAATG 1 cut(s) 45
BsrGI TGTACA 1 cut(s) 303
BsrI ACTGG 1 cut(s) 241
BssMI GATC 2 cut(s) 56, 72
BssNI GRCGYC 1 cut(s) 23
Bst4CI ACNGT 3 cut(s) 43, 143, 163
BstACI GRCGYC 1 cut(s) 23
BstAUI TGTACA 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 108
BstKTI GATC 2 cut(s) 59, 75
BstMBI GATC 2 cut(s) 56, 72
BstSCI CCNGG 1 cut(s) 25
BstSFI CTRYAG 1 cut(s) 139
BstSLI GKGCMC 1 cut(s) 240
BstV1I GCAGC 4 cut(s) 105, 197, 235, 238
BveI ACCTGC 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 52
CciI TCATGA 1 cut(s) 145
CseI GACGC 1 cut(s) 31
Csp6I GTAC 2 cut(s) 88, 304
CviAII CATG 1 cut(s) 146
CviJI RGCY 4 cut(s) 15, 118, 138, 271
CviKI_1 RGCY 4 cut(s) 15, 118, 138, 271
CviQI GTAC 2 cut(s) 88, 304
DdeI CTNAG 1 cut(s) 108
DpnI GATC 2 cut(s) 58, 74
DpnII GATC 2 cut(s) 56, 72
Eco57I CTGAAG 1 cut(s) 297
FaeI CATG 1 cut(s) 149
FaiI YATR 2 cut(s) 147, 302
FatI CATG 1 cut(s) 145
Fnu4HI GCNGC 4 cut(s) 119, 211, 249, 252
Fsp4HI GCNGC 4 cut(s) 119, 211, 249, 252
FspBI CTAG 1 cut(s) 12
GluI GCNGC 4 cut(s) 119, 211, 249, 252
HapII CCGG 2 cut(s) 26, 216
HgaI GACGC 1 cut(s) 31
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 1 cut(s) 149
HinfI GANTC 1 cut(s) 104
HpaII CCGG 2 cut(s) 26, 216
Hpy166II GTNNAC 2 cut(s) 238, 283
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 4 cut(s) 19, 146, 193, 322
Hpy8I GTNNAC 2 cut(s) 238, 283
Hpy99I CGWCG 1 cut(s) 25
HpyCH4III ACNGT 3 cut(s) 43, 143, 163
HpyCH4V TGCA 3 cut(s) 50, 213, 238
HpyF3I CTNAG 1 cut(s) 108
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 1 cut(s) 149
Kzo9I GATC 2 cut(s) 56, 72
LpnPI CCDG 8 cut(s) 36, 39, 95, 183, 217, 229, 254, 288
Lsp1109I GCAGC 4 cut(s) 105, 197, 235, 238
MaeI CTAG 1 cut(s) 12
MalI GATC 2 cut(s) 58, 74
MboI GATC 2 cut(s) 56, 72
MboII GAAGA 1 cut(s) 337
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 2 cut(s) 131, 219
MnlI CCTC 3 cut(s) 26, 108, 142
MspI CCGG 2 cut(s) 26, 216
MspR9I CCNGG 1 cut(s) 27
NciI CCSGG 1 cut(s) 27
NdeII GATC 2 cut(s) 56, 72
NlaIII CATG 1 cut(s) 149
PagI TCATGA 1 cut(s) 145
PaqCI CACCTGC 1 cut(s) 178
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 4 cut(s) 120, 212, 250, 253
RsaI GTAC 2 cut(s) 89, 305
RsaNI GTAC 2 cut(s) 88, 304
SatI GCNGC 4 cut(s) 119, 211, 249, 252
Sau3AI GATC 2 cut(s) 56, 72
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 1 cut(s) 240
SetI ASST 3 cut(s) 153, 172, 277
SfcI CTRYAG 1 cut(s) 139
Sse9I AATT 2 cut(s) 131, 219
SsiI CCGC 1 cut(s) 173
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 25
TaaI ACNGT 3 cut(s) 43, 143, 163
TasI AATT 2 cut(s) 131, 219
TatI WGTACW 1 cut(s) 303
TfiI GAWTC 1 cut(s) 104
TseI GCWGC 4 cut(s) 118, 210, 248, 251
TspDTI ATGAA 1 cut(s) 327
VneI GTGCAC 1 cut(s) 236
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.