Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004045

Physical Location & Seq

Genomic Coordinates Reverse (-)

931755 .. 932669

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00218620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGAAGCTCAATTTTTTCGGTTTCTAAAGATCGTGGGAGTGGGGTACAAAGCAAGAGCAGAAGCTCAGGGGAGGCTGCTGTATCTGAAATTAGGCTACAGTCATGAGGTTGAACTCACAGTTCCTCCTGCGGTTCGTGTATTCTGCTTCAAGAACAATGTGGTCTGCTGCACCGGAATTGATAAGAACAGGGTGCACCAGTTTGCTGCTGCCGTTCGCAGTTGTAAGCCACCTGAAGTTTACAAAGGCAAGGGCATTATGTACATTGATGAAGTCATCAAGAAGAAACAAGGAAAGAAGTCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

102

Amino Acids

11.57

Weight (kDa)

9.81

Isoelectric Point (pI)

15.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6	PF00347	13 - 88	2.4e-19	Ribosomal protein L6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18400
fragaria_vesca	FvH4_2g13340 FvH4_5g39530
malus_domestica	MD05G1029600.v1.1
prunus_persica	Prupe.7G092200_v2.0.a1 Prupe.7G092200_v2.0.a1 Prupe.7G092200_v2.0.a1 Prupe.7G092200_v2.0.a1 Prupe.7G092200_v2.0.a1 Prupe.7G092200_v2.0.a1
pyrus_communis	pycom05g02090
rosa_chinensis	RchiOBHm_Chr6g0274821 RchiOBHm_Chr7g0241841
rosa_laevigata	RLG00000000539
rosa_multiflora	Rmu_sc0001865.1_g000008
rosa_roxburghii	Rroxscaffold_3G00218620 Rroxscaffold_7G00193930
rosa_rugosa	Rorug06G0084700 Rorug06G0084700 Rorug06G0084800 Rorug06G0084900 Rorug07G0347900
rosa_samantha	Rh6AG200500 Rh6BG203900 Rh6CG204100 Rh6CG204200 Rh6DG195500 Rh7AG502000 Rh7BG473400 Rh7CG518500 Rh7DG487300
rosa_wichuraiana	Rw6G017440 Rw7G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	2 cut(s)	47, 263
AgsI	TTSAA	2 cut(s)	113, 151
AluBI	AGCT	2 cut(s)	8, 65
AluI	AGCT	2 cut(s)	8, 65
Alw21I	GWGCWC	1 cut(s)	198
Alw44I	GTGCAC	1 cut(s)	194
ApaLI	GTGCAC	1 cut(s)	194
ApeKI	GCWGC	4 cut(s)	76, 168, 206, 209
BaeGI	GKGCMC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	4 cut(s)	63, 155, 193, 196
BceAI	ACGGC	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	97
BisI	GCNGC	4 cut(s)	77, 169, 207, 210
BlsI	GCNGC	4 cut(s)	78, 170, 208, 211
Bpu10I	CCTNAGC	1 cut(s)	66
BsaWI	WCCGGW	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bse1I	ACTGG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	199
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	4 cut(s)	63, 155, 193, 196
BsgI	GTGCAG	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	1 cut(s)	131
BspCNI	CTCAG	1 cut(s)	79
BspHI	TCATGA	1 cut(s)	103
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	199
BssMI	GATC	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	101, 121
BstAUI	TGTACA	1 cut(s)	261
BstDEI	CTNAG	1 cut(s)	66
BstKTI	GATC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	30
BstSFI	CTRYAG	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	198
BstV1I	GCAGC	4 cut(s)	63, 155, 193, 196
CciI	TCATGA	1 cut(s)	103
Csp6I	GTAC	2 cut(s)	46, 262
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	5 cut(s)	8, 65, 76, 96, 229
CviKI_1	RGCY	5 cut(s)	8, 65, 76, 96, 229
CviQI	GTAC	2 cut(s)	46, 262
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	255
FaeI	CATG	1 cut(s)	107
FaiI	YATR	2 cut(s)	105, 260
FatI	CATG	1 cut(s)	103
Fnu4HI	GCNGC	4 cut(s)	77, 169, 207, 210
Fsp4HI	GCNGC	4 cut(s)	77, 169, 207, 210
GluI	GCNGC	4 cut(s)	77, 169, 207, 210
HapII	CCGG	1 cut(s)	174
Hin1II	CATG	1 cut(s)	107
HpaII	CCGG	1 cut(s)	174
Hpy166II	GTNNAC	2 cut(s)	196, 241
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	3 cut(s)	104, 151, 280
Hpy8I	GTNNAC	2 cut(s)	196, 241
HpyCH4III	ACNGT	2 cut(s)	101, 121
HpyCH4V	TGCA	2 cut(s)	171, 196
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	107
Kzo9I	GATC	1 cut(s)	30
LpnPI	CCDG	6 cut(s)	53, 141, 175, 187, 212, 246
Lsp1109I	GCAGC	4 cut(s)	63, 155, 193, 196
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	3 cut(s)	11, 89, 177
MnlI	CCTC	3 cut(s)	66, 100, 135
MspI	CCGG	1 cut(s)	174
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	1 cut(s)	107
PagI	TCATGA	1 cut(s)	103
PkrI	GCNGC	4 cut(s)	78, 170, 208, 211
RsaI	GTAC	2 cut(s)	47, 263
RsaNI	GTAC	2 cut(s)	46, 262
SatI	GCNGC	4 cut(s)	77, 169, 207, 210
Sau3AI	GATC	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	4 cut(s)	10, 67, 111, 235
SfcI	CTRYAG	1 cut(s)	97
Sse9I	AATT	3 cut(s)	11, 89, 177
SsiI	CCGC	1 cut(s)	131
TaaI	ACNGT	2 cut(s)	101, 121
TasI	AATT	3 cut(s)	11, 89, 177
TatI	WGTACW	1 cut(s)	261
TseI	GCWGC	4 cut(s)	76, 168, 206, 209
TspDTI	ATGAA	1 cut(s)	285
VneI	GTGCAC	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.