Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004045

Physical Location & Seq

Genomic Coordinates Forward (+)

55799166 .. 55799474

Gene Structure 309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG473400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGAAGCTCAATTTTTTCGGTTTCTAAAGATCGTGGGAGTGGGGTACAAAGCAAGAGCAGAAGCTCAGGGGAGGCTGCTGTATCTGAAATTAGGCTACAGTCATGAGGTTGAACTCACAGTTCCTCCTGCGGTTCGTGTATTCTGCTTCAAGAACAATGTGGTTTGCTGCACCGGAATCGATAAGAACAGGGTGCACCAGTTTGCTGCTGCCGTTCGCAGTTGTAAGCCACCTGAAGTTTACAAAGGCAAGGGCATTATGTACATTGATGAAGTCATCAAGAAGAAACAAGGAAAGAAGTCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

102

Amino Acids

11.57

Weight (kDa)

9.81

Isoelectric Point (pI)

15.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6	PF00347	13 - 88	2.4e-19	Ribosomal protein L6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18400
fragaria_vesca	FvH4_2g13340 FvH4_5g39530
malus_domestica	MD05G1029600.v1.1
prunus_persica	Prupe.7G092200_v2.0.a1 Prupe.7G092200_v2.0.a1 Prupe.7G092200_v2.0.a1 Prupe.7G092200_v2.0.a1 Prupe.7G092200_v2.0.a1 Prupe.7G092200_v2.0.a1
pyrus_communis	pycom05g02090
rosa_chinensis	RchiOBHm_Chr6g0274821 RchiOBHm_Chr7g0241841
rosa_laevigata	RLG00000000539
rosa_multiflora	Rmu_sc0001865.1_g000008
rosa_roxburghii	Rroxscaffold_3G00218620 Rroxscaffold_7G00193930
rosa_rugosa	Rorug06G0084700 Rorug06G0084700 Rorug06G0084800 Rorug06G0084900 Rorug07G0347900
rosa_samantha	Rh6AG200500 Rh6BG203900 Rh6CG204100 Rh6CG204200 Rh6DG195500 Rh7AG502000 Rh7BG473400 Rh7CG518500 Rh7DG487300
rosa_wichuraiana	Rw6G017440 Rw7G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	2 cut(s)	47, 263
AgsI	TTSAA	2 cut(s)	113, 151
AluBI	AGCT	2 cut(s)	8, 65
AluI	AGCT	2 cut(s)	8, 65
Alw21I	GWGCWC	1 cut(s)	198
Alw44I	GTGCAC	1 cut(s)	194
ApaLI	GTGCAC	1 cut(s)	194
ApeKI	GCWGC	4 cut(s)	76, 168, 206, 209
BaeGI	GKGCMC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	4 cut(s)	63, 155, 193, 196
BceAI	ACGGC	1 cut(s)	197
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BfmI	CTRYAG	1 cut(s)	97
BisI	GCNGC	4 cut(s)	77, 169, 207, 210
BlsI	GCNGC	4 cut(s)	78, 170, 208, 211
Bpu10I	CCTNAGC	1 cut(s)	66
Bsa29I	ATCGAT	1 cut(s)	180
BsaWI	WCCGGW	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bse1I	ACTGG	1 cut(s)	199
BseCI	ATCGAT	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	199
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	4 cut(s)	63, 155, 193, 196
BsgI	GTGCAG	1 cut(s)	154
BshVI	ATCGAT	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	1 cut(s)	131
BspCNI	CTCAG	1 cut(s)	79
BspDI	ATCGAT	1 cut(s)	180
BspHI	TCATGA	1 cut(s)	103
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	199
BssMI	GATC	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	101, 121
BstAUI	TGTACA	1 cut(s)	261
BstDEI	CTNAG	1 cut(s)	66
BstKTI	GATC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	30
BstSFI	CTRYAG	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	198
BstV1I	GCAGC	4 cut(s)	63, 155, 193, 196
Bsu15I	ATCGAT	1 cut(s)	180
BsuTUI	ATCGAT	1 cut(s)	180
CciI	TCATGA	1 cut(s)	103
ClaI	ATCGAT	1 cut(s)	180
Csp6I	GTAC	2 cut(s)	46, 262
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	5 cut(s)	8, 65, 76, 96, 229
CviKI_1	RGCY	5 cut(s)	8, 65, 76, 96, 229
CviQI	GTAC	2 cut(s)	46, 262
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	255
FaeI	CATG	1 cut(s)	107
FaiI	YATR	2 cut(s)	105, 260
FatI	CATG	1 cut(s)	103
Fnu4HI	GCNGC	4 cut(s)	77, 169, 207, 210
Fsp4HI	GCNGC	4 cut(s)	77, 169, 207, 210
GluI	GCNGC	4 cut(s)	77, 169, 207, 210
HapII	CCGG	1 cut(s)	174
Hin1II	CATG	1 cut(s)	107
HinfI	GANTC	1 cut(s)	177
HpaII	CCGG	1 cut(s)	174
Hpy166II	GTNNAC	2 cut(s)	196, 241
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	3 cut(s)	104, 151, 280
Hpy8I	GTNNAC	2 cut(s)	196, 241
HpyCH4III	ACNGT	2 cut(s)	101, 121
HpyCH4V	TGCA	2 cut(s)	171, 196
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	107
Kzo9I	GATC	1 cut(s)	30
LpnPI	CCDG	6 cut(s)	53, 141, 175, 187, 212, 246
Lsp1109I	GCAGC	4 cut(s)	63, 155, 193, 196
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	2 cut(s)	11, 89
MnlI	CCTC	3 cut(s)	66, 100, 135
MspI	CCGG	1 cut(s)	174
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	1 cut(s)	107
PagI	TCATGA	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	177
PkrI	GCNGC	4 cut(s)	78, 170, 208, 211
RsaI	GTAC	2 cut(s)	47, 263
RsaNI	GTAC	2 cut(s)	46, 262
SatI	GCNGC	4 cut(s)	77, 169, 207, 210
Sau3AI	GATC	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	4 cut(s)	10, 67, 111, 235
SfcI	CTRYAG	1 cut(s)	97
Sse9I	AATT	2 cut(s)	11, 89
SsiI	CCGC	1 cut(s)	131
TaaI	ACNGT	2 cut(s)	101, 121
TaqI	TCGA	1 cut(s)	180
TasI	AATT	2 cut(s)	11, 89
TatI	WGTACW	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	177
TseI	GCWGC	4 cut(s)	76, 168, 206, 209
TspDTI	ATGAA	1 cut(s)	285
VneI	GTGCAC	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.