pycom05g02090

Belongs to the universal ribosomal protein uL6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0004045
Physical Location & Seq
Forward (+)
2405369 .. 2405602
234 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g02090.1

Sequence Viewer

Length: 234 bp
ATGTTGTATCTGAAGTTGGGTTACAGTCATGAGGTAGAATTGACCGTTCCTCCTGCGGTTCGTGTTTTCTGCTTCAAGAACAACGTAGTTTGCTGCACCGGAATTGATAAAGATAGGGTGCACCAGTTTGCTGCTGCTGTTCGTAGTTGTAAGCCACCTGAAGTCTACAAGGGCAAGGGTATAATGTACGTCGATGAAGTTATCAAGAAAAAGCAAGGAAAGAAATCTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6

Protein Analysis

78

Amino Acids

8.72

Weight (kDa)

9.51

Isoelectric Point (pI)

21.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6 PF00347 2 - 63 1.5e-17 Ribosomal protein L6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 165
AciI CCGC 1 cut(s) 56
AcuI CTGAAG 2 cut(s) 32, 180
AfaI GTAC 1 cut(s) 188
AgsI TTSAA 1 cut(s) 76
Alw21I GWGCWC 1 cut(s) 123
Alw44I GTGCAC 1 cut(s) 119
ApaLI GTGCAC 1 cut(s) 119
ApeKI GCWGC 3 cut(s) 93, 131, 134
BaeGI GKGCMC 1 cut(s) 123
BarI GAAGNNNNNNTAC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 3 cut(s) 80, 118, 121
BisI GCNGC 3 cut(s) 94, 132, 135
BlsI GCNGC 3 cut(s) 95, 133, 136
BsaWI WCCGGW 1 cut(s) 98
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
Bse1I ACTGG 1 cut(s) 124
BseNI ACTGG 1 cut(s) 124
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 3 cut(s) 80, 118, 121
BsgI GTGCAG 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 123
BsiSI CCGG 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 123
BspACI CCGC 1 cut(s) 56
BspHI TCATGA 1 cut(s) 28
BsrI ACTGG 1 cut(s) 124
Bst4CI ACNGT 2 cut(s) 26, 46
BstDEI CTNAG 1 cut(s) 228
BstSLI GKGCMC 1 cut(s) 123
BstV1I GCAGC 3 cut(s) 80, 118, 121
CciI TCATGA 1 cut(s) 28
Csp6I GTAC 1 cut(s) 187
CviAII CATG 1 cut(s) 29
CviJI RGCY 1 cut(s) 154
CviKI_1 RGCY 1 cut(s) 154
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 1 cut(s) 228
Eco57I CTGAAG 2 cut(s) 32, 180
FaeI CATG 1 cut(s) 32
FaiI YATR 2 cut(s) 30, 182
FatI CATG 1 cut(s) 28
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 3 cut(s) 94, 132, 135
Fsp4HI GCNGC 3 cut(s) 94, 132, 135
GluI GCNGC 3 cut(s) 94, 132, 135
HapII CCGG 1 cut(s) 99
Hin1II CATG 1 cut(s) 32
HpaII CCGG 1 cut(s) 99
Hpy166II GTNNAC 2 cut(s) 121, 166
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 3 cut(s) 29, 76, 205
Hpy8I GTNNAC 2 cut(s) 121, 166
Hpy99I CGWCG 1 cut(s) 194
HpyCH4III ACNGT 2 cut(s) 26, 46
HpyCH4IV ACGT 2 cut(s) 84, 189
HpyCH4V TGCA 2 cut(s) 96, 121
HpyF3I CTNAG 1 cut(s) 228
HpySE526I ACGT 2 cut(s) 84, 189
Hsp92II CATG 1 cut(s) 32
LpnPI CCDG 4 cut(s) 66, 112, 137, 171
Lsp1109I GCAGC 3 cut(s) 80, 118, 121
MaeII ACGT 2 cut(s) 84, 189
MaeIII GTNAC 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 2 cut(s) 38, 102
MnlI CCTC 2 cut(s) 25, 60
MspI CCGG 1 cut(s) 99
NlaIII CATG 1 cut(s) 32
PagI TCATGA 1 cut(s) 28
PkrI GCNGC 3 cut(s) 95, 133, 136
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SatI GCNGC 3 cut(s) 94, 132, 135
SduI GDGCHC 1 cut(s) 123
SetI ASST 4 cut(s) 36, 87, 160, 192
Sse9I AATT 2 cut(s) 38, 102
SsiI CCGC 1 cut(s) 56
TaaI ACNGT 2 cut(s) 26, 46
TaiI ACGT 2 cut(s) 87, 192
TaqI TCGA 1 cut(s) 192
TasI AATT 2 cut(s) 38, 102
TseI GCWGC 3 cut(s) 93, 131, 134
TspDTI ATGAA 1 cut(s) 210
VneI GTGCAC 1 cut(s) 119
XmiI GTMKAC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.