Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004045

Physical Location & Seq

Genomic Coordinates Forward (+)

29169709 .. 29170303

Gene Structure 595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g39530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGAAGCTCAGTTCTTTCGGTTTCTAAAGATCGTGGGAGTGGGGTACAAAGCAAGAGCCGAAGCTCAGGGGAAGATGTTGTATCTGAAATTAGGGTACAGTCATGAGGTTGAACTCACAGTTCCTCCTGCAGTTCGTGTCTTCTGCTTCAAGAACAATGTGGTTTGCTGCACCGGAATTGATAAGAATAGGGTGCATCAGTTTGCTTCTGCCGTCCGCGGTTGTAAGTCGCCTGAAGTTTACAAAGGCAAGGGCATTATGTACATTGATGAAGTTTTCAAGAAGAAACAAGGAAAGAAGTCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

103

Amino Acids

11.57

Weight (kDa)

9.78

Isoelectric Point (pI)

11.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6	PF00347	13 - 88	2e-18	Ribosomal protein L6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18400
fragaria_vesca	FvH4_2g13340 FvH4_5g39530
malus_domestica	MD05G1029600.v1.1
prunus_persica	Prupe.7G092200_v2.0.a1 Prupe.7G092200_v2.0.a1 Prupe.7G092200_v2.0.a1 Prupe.7G092200_v2.0.a1 Prupe.7G092200_v2.0.a1 Prupe.7G092200_v2.0.a1
pyrus_communis	pycom05g02090
rosa_chinensis	RchiOBHm_Chr6g0274821 RchiOBHm_Chr7g0241841
rosa_laevigata	RLG00000000539
rosa_multiflora	Rmu_sc0001865.1_g000008
rosa_roxburghii	Rroxscaffold_3G00218620 Rroxscaffold_7G00193930
rosa_rugosa	Rorug06G0084700 Rorug06G0084700 Rorug06G0084800 Rorug06G0084900 Rorug07G0347900
rosa_samantha	Rh6AG200500 Rh6BG203900 Rh6CG204100 Rh6CG204200 Rh6DG195500 Rh7AG502000 Rh7BG473400 Rh7CG518500 Rh7DG487300
rosa_wichuraiana	Rw6G017440 Rw7G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	219
AciI	CCGC	2 cut(s)	217, 219
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	3 cut(s)	47, 98, 263
AgsI	TTSAA	3 cut(s)	113, 151, 280
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	2 cut(s)	8, 65
AluI	AGCT	2 cut(s)	8, 65
ApeKI	GCWGC	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	129
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
BmsI	GCATC	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	133
Bpu10I	CCTNAGC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	217
BsaWI	WCCGGW	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
BseDI	CCNNGG	1 cut(s)	217
BseMII	CTCAG	2 cut(s)	23, 80
BseXI	GCAGC	1 cut(s)	155
BsgI	GTGCAG	1 cut(s)	154
Bsh1236I	CGCG	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	174
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	2 cut(s)	217, 219
BspCNI	CTCAG	2 cut(s)	22, 79
BspFNI	CGCG	1 cut(s)	219
BspHI	TCATGA	1 cut(s)	103
BspMAI	CTGCAG	1 cut(s)	133
BsrGI	TGTACA	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	101, 121
BstAUI	TGTACA	1 cut(s)	261
BstDEI	CTNAG	2 cut(s)	9, 66
BstDSI	CCRYGG	1 cut(s)	217
BstFNI	CGCG	1 cut(s)	219
BstKTI	GATC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	30
BstSFI	CTRYAG	1 cut(s)	129
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	155
BstV2I	GAAGAC	1 cut(s)	133
BtgI	CCRYGG	1 cut(s)	217
CciI	TCATGA	1 cut(s)	103
Cfr42I	CCGCGG	1 cut(s)	220
Csp6I	GTAC	3 cut(s)	46, 97, 262
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	3 cut(s)	8, 59, 65
CviKI_1	RGCY	3 cut(s)	8, 59, 65
CviQI	GTAC	3 cut(s)	46, 97, 262
DdeI	CTNAG	2 cut(s)	9, 66
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	255
FaeI	CATG	1 cut(s)	107
FaiI	YATR	2 cut(s)	105, 260
FatI	CATG	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	169
GluI	GCNGC	1 cut(s)	169
HapII	CCGG	1 cut(s)	174
Hin1II	CATG	1 cut(s)	107
HpaII	CCGG	1 cut(s)	174
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	3 cut(s)	104, 151, 280
Hpy8I	GTNNAC	1 cut(s)	241
HpyCH4III	ACNGT	2 cut(s)	101, 121
HpyCH4V	TGCA	3 cut(s)	131, 171, 196
HpyF3I	CTNAG	2 cut(s)	9, 66
Hsp92II	CATG	1 cut(s)	107
KspI	CCGCGG	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	30
LpnPI	CCDG	4 cut(s)	53, 141, 187, 246
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	1 cut(s)	205
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	3 cut(s)	85, 133, 295
MluCI	AATT	2 cut(s)	89, 177
MnlI	CCTC	2 cut(s)	100, 135
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	1 cut(s)	174
MvnI	CGCG	1 cut(s)	219
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	1 cut(s)	107
PagI	TCATGA	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	170
PstI	CTGCAG	1 cut(s)	133
RsaI	GTAC	3 cut(s)	47, 98, 263
RsaNI	GTAC	3 cut(s)	46, 97, 262
SacII	CCGCGG	1 cut(s)	220
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	1 cut(s)	30
SetI	ASST	3 cut(s)	10, 67, 111
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	1 cut(s)	129
Sfr303I	CCGCGG	1 cut(s)	220
SgrBI	CCGCGG	1 cut(s)	220
Sse9I	AATT	2 cut(s)	89, 177
SsiI	CCGC	2 cut(s)	217, 219
TaaI	ACNGT	2 cut(s)	101, 121
TasI	AATT	2 cut(s)	89, 177
TatI	WGTACW	1 cut(s)	261
TseI	GCWGC	1 cut(s)	168
TspDTI	ATGAA	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.