FvH4_2g13340

Belongs to the universal ribosomal protein uL6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0004045
Physical Location & Seq
Reverse (-)
11639363 .. 11641726
2364 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13340.t1

Sequence Viewer

Length: 309 bp
ATGGAAGCCCAATTTTTCAAGTTTCTTAAGATAGTGGGTGTGGGCTACAAAGCCAGGGCTGAAGCTCAAGGACGGTTGCTGTATCTGAAATTGGGTTACAGTCATGAAGTTGAGTTGACTGTGCCGCCTGCTGTTCGGGTCTTCTGCTTCAAGAACAATGTGGTTTGCTGCACCGGGATTGATAAGGGGAGGGTGCACCAGTTTGCGGCCGCTGTTCGGGGTTGTAAGCCGCCTGAGGTGTACAAAGGCAAGGGGATAATGTACATCGATGAGGTTATAAAGAAGAAGCAAGGGAAGAAGTCTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6

Protein Analysis

103

Amino Acids

11.45

Weight (kDa)

9.78

Isoelectric Point (pI)

4.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6 PF00347 13 - 88 2.8e-18 Ribosomal protein L6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 278
AciI CCGC 4 cut(s) 125, 206, 210, 230
AcoI YGGCCR 1 cut(s) 207
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 2 cut(s) 242, 263
AfiI CCNNNNNNNGG 2 cut(s) 205, 216
AflII CTTAAG 1 cut(s) 26
AgsI TTSAA 2 cut(s) 19, 151
AjnI CCWGG 1 cut(s) 53
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Alw21I GWGCWC 1 cut(s) 198
Alw44I GTGCAC 1 cut(s) 194
AoxI GGCC 1 cut(s) 207
ApaLI GTGCAC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 168
AsuC2I CCSGG 1 cut(s) 175
AxyI CCTNAGG 1 cut(s) 234
BaeGI GKGCMC 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 155
BciT130I CCWGG 1 cut(s) 55
BcnI CCSGG 1 cut(s) 175
BfrI CTTAAG 1 cut(s) 26
BisI GCNGC 5 cut(s) 125, 169, 207, 210, 230
BlsI GCNGC 5 cut(s) 126, 170, 208, 211, 231
Bme1390I CCNGG 2 cut(s) 55, 175
BmrFI CCNGG 2 cut(s) 55, 175
BpiI GAAGAC 1 cut(s) 133
BpuEI CTTGAG 1 cut(s) 51
BpuMI CCSGG 1 cut(s) 175
Bsa29I ATCGAT 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 54
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 216
Bse1I ACTGG 1 cut(s) 199
Bse21I CCTNAGG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 55
BseCI ATCGAT 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 54
BseLI CCNNNNNNNGG 2 cut(s) 205, 216
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 199
BseSI GKGCMC 1 cut(s) 198
BseX3I CGGCCG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 155
BsgI GTGCAG 1 cut(s) 154
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 1 cut(s) 209
BshVI ATCGAT 1 cut(s) 267
BsiEI CGRYCG 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 1 cut(s) 174
BslI CCNNNNNNNGG 2 cut(s) 205, 216
BsnI GGCC 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 198
Bsp1407I TGTACA 2 cut(s) 240, 261
BspACI CCGC 4 cut(s) 125, 206, 210, 230
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 226
BspDI ATCGAT 1 cut(s) 267
BspHI TCATGA 1 cut(s) 103
BspTI CTTAAG 1 cut(s) 26
BsrGI TGTACA 2 cut(s) 240, 261
BsrI ACTGG 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 55
Bst4CI ACNGT 3 cut(s) 75, 101, 121
BstAFI CTTAAG 1 cut(s) 26
BstAUI TGTACA 2 cut(s) 240, 261
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 2 cut(s) 234, 303
BstMCI CGRYCG 1 cut(s) 210
BstNI CCWGG 1 cut(s) 55
BstSCI CCNGG 2 cut(s) 53, 173
BstSLI GKGCMC 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 155
BstV2I GAAGAC 1 cut(s) 133
BstZI CGGCCG 1 cut(s) 207
Bsu15I ATCGAT 1 cut(s) 267
Bsu36I CCTNAGG 1 cut(s) 234
BsuRI GGCC 1 cut(s) 209
BsuTUI ATCGAT 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 129
CciI TCATGA 1 cut(s) 103
CciNI GCGGCCGC 1 cut(s) 207
ClaI ATCGAT 1 cut(s) 267
Csp6I GTAC 2 cut(s) 241, 262
CviAII CATG 1 cut(s) 104
CviJI RGCY 7 cut(s) 8, 45, 53, 59, 65, 209, 229
CviKI_1 RGCY 7 cut(s) 8, 45, 53, 59, 65, 209, 229
CviQI GTAC 2 cut(s) 241, 262
DdeI CTNAG 2 cut(s) 234, 303
EaeI YGGCCR 1 cut(s) 207
EagI CGGCCG 1 cut(s) 207
EclXI CGGCCG 1 cut(s) 207
Eco52I CGGCCG 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 81
Eco81I CCTNAGG 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 53
FaeI CATG 1 cut(s) 107
FaiI YATR 2 cut(s) 105, 278
FatI CATG 1 cut(s) 103
Fnu4HI GCNGC 5 cut(s) 125, 169, 207, 210, 230
Fsp4HI GCNGC 5 cut(s) 125, 169, 207, 210, 230
GluI GCNGC 5 cut(s) 125, 169, 207, 210, 230
HaeIII GGCC 1 cut(s) 209
HapII CCGG 1 cut(s) 174
Hin1II CATG 1 cut(s) 107
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HpaII CCGG 1 cut(s) 174
Hpy166II GTNNAC 3 cut(s) 117, 196, 241
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 2 cut(s) 104, 151
Hpy8I GTNNAC 3 cut(s) 117, 196, 241
HpyCH4III ACNGT 3 cut(s) 75, 101, 121
HpyCH4V TGCA 2 cut(s) 171, 196
HpyF3I CTNAG 2 cut(s) 234, 303
Hsp92II CATG 1 cut(s) 107
LpnPI CCDG 6 cut(s) 40, 67, 141, 187, 212, 246
Lsp1109I GCAGC 1 cut(s) 155
MaeIII GTNAC 1 cut(s) 95
MboII GAAGA 3 cut(s) 133, 295, 307
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 2 cut(s) 11, 89
MnlI CCTC 3 cut(s) 183, 229, 265
MseI TTAA 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 212
MspCI CTTAAG 1 cut(s) 26
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 2 cut(s) 55, 175
MvaI CCWGG 1 cut(s) 55
NciI CCSGG 1 cut(s) 175
NlaIII CATG 1 cut(s) 107
NotI GCGGCCGC 1 cut(s) 207
PagI TCATGA 1 cut(s) 103
PkrI GCNGC 5 cut(s) 126, 170, 208, 211, 231
PsiI TTATAA 1 cut(s) 278
Psp6I CCWGG 1 cut(s) 53
PspGI CCWGG 1 cut(s) 53
RsaI GTAC 2 cut(s) 242, 263
RsaNI GTAC 2 cut(s) 241, 262
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 5 cut(s) 125, 169, 207, 210, 230
ScrFI CCNGG 2 cut(s) 55, 175
SduI GDGCHC 1 cut(s) 198
SetI ASST 3 cut(s) 67, 240, 276
SmlI CTYRAG 2 cut(s) 26, 66
SmoI CTYRAG 2 cut(s) 26, 66
Sse9I AATT 2 cut(s) 11, 89
SsiI CCGC 4 cut(s) 125, 206, 210, 230
StyD4I CCNGG 2 cut(s) 53, 173
TaaI ACNGT 3 cut(s) 75, 101, 121
TaqI TCGA 1 cut(s) 267
TasI AATT 2 cut(s) 11, 89
TatI WGTACW 2 cut(s) 240, 261
TauI GCSGC 4 cut(s) 127, 209, 212, 232
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TseI GCWGC 1 cut(s) 168
TspDTI ATGAA 1 cut(s) 120
Vha464I CTTAAG 1 cut(s) 26
VneI GTGCAC 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.